Wall clock time and date at job start Mon Mar 30 2020 01:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99627 * 2 1 4 4 C 1.53004 * 109.46917 * 95.14847 * 3 2 1 5 5 H 1.09004 * 112.73525 * 44.01555 * 4 3 2 6 6 C 1.53496 * 113.51847 * 273.22879 * 4 3 2 7 7 C 1.53756 * 83.25504 * 218.97114 * 6 4 3 8 8 N 1.47060 * 113.46859 * 174.76182 * 4 3 2 9 9 C 1.36933 * 136.05824 * 321.92633 * 8 4 3 10 10 H 1.08000 * 120.00214 * 355.14634 * 9 8 4 11 11 C 1.38812 * 120.00004 * 175.42533 * 9 8 4 12 12 N 1.31624 * 119.99965 * 359.72528 * 11 9 8 13 13 Si 1.86797 * 120.00275 * 179.72212 * 11 9 8 14 14 H 1.48502 * 109.47132 * 90.00117 * 13 11 9 15 15 H 1.48494 * 109.47324 * 210.00347 * 13 11 9 16 16 H 1.48505 * 109.46938 * 330.00149 * 13 11 9 17 17 C 1.34778 * 120.00030 * 180.02562 * 2 1 3 18 18 O 1.21282 * 119.99860 * 174.97869 * 17 2 1 19 19 C 1.50696 * 119.99928 * 354.97975 * 17 2 1 20 20 C 1.50704 * 109.46879 * 180.02562 * 19 17 2 21 21 C 1.34842 * 125.88870 * 274.68426 * 20 19 17 22 22 C 1.40890 * 107.41505 * 179.88561 * 21 20 19 23 23 C 1.34846 * 107.41758 * 0.38482 * 22 21 20 24 24 N 1.36339 * 108.22098 * 359.76495 * 23 22 21 25 25 H 0.96994 * 125.63648 * 180.02562 * 24 23 22 26 26 H 1.09005 * 109.47620 * 89.99713 * 1 2 3 27 27 H 1.09006 * 109.46970 * 209.99286 * 1 2 3 28 28 H 1.08998 * 109.47386 * 329.99356 * 1 2 3 29 29 H 1.08995 * 109.47348 * 335.14660 * 3 2 1 30 30 H 1.09000 * 109.47025 * 215.14710 * 3 2 1 31 31 H 1.08995 * 114.20707 * 332.72828 * 6 4 3 32 32 H 1.09000 * 114.20928 * 105.35969 * 6 4 3 33 33 H 1.09001 * 113.46902 * 271.50285 * 7 6 4 34 34 H 1.08999 * 113.55133 * 140.98363 * 7 6 4 35 35 H 0.96998 * 120.00100 * 180.02562 * 12 11 9 36 36 H 1.09004 * 109.46844 * 299.99958 * 19 17 2 37 37 H 1.08995 * 109.47547 * 60.00086 * 19 17 2 38 38 H 1.08002 * 126.29374 * 0.03093 * 21 20 19 39 39 H 1.08004 * 126.29315 * 180.12921 * 22 21 20 40 40 H 1.08008 * 125.88856 * 179.73369 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.5645 1.6457 1.4367 5 1 2.9461 0.8005 2.0096 6 6 1.4640 2.4304 2.1643 7 6 2.6549 3.2171 2.7361 8 7 3.4096 2.8456 1.5297 9 6 4.4467 3.3792 0.8122 10 1 4.8679 2.8308 -0.0174 11 6 4.9605 4.6224 1.1548 12 7 4.4473 5.2907 2.1659 13 14 6.3804 5.3468 0.1809 14 1 5.8471 6.1541 -0.9456 15 1 7.1976 6.2135 1.0676 16 1 7.2254 4.2487 -0.3535 17 6 2.1389 -1.1672 -0.0005 18 8 3.3482 -1.1691 -0.0925 19 6 1.3897 -2.4698 0.1131 20 6 2.3682 -3.6157 0.0891 21 6 2.8669 -4.2064 -1.0157 22 6 3.7425 -5.2250 -0.5906 23 6 3.7390 -5.2236 0.7578 24 7 2.8973 -4.2380 1.1809 25 1 2.7067 -4.0159 2.1056 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.5715 2.0496 -0.4319 30 1 3.1068 1.1633 -0.5916 31 1 0.8172 3.0090 1.5049 32 1 0.9149 1.8483 2.9044 33 1 3.0604 2.7863 3.6516 34 1 2.4697 4.2880 2.8196 35 1 4.8061 6.1596 2.4051 36 1 0.8324 -2.4879 1.0497 37 1 0.6976 -2.5651 -0.7234 38 1 2.6390 -3.9450 -2.0386 39 1 4.3090 -5.8881 -1.2277 40 1 4.3049 -5.8889 1.3931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488694200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:09 Heat of formation + Delta-G solvation = 76.925439 kcal Electronic energy + Delta-G solvation = -21477.355618 eV Core-core repulsion = 18295.365765 eV Total energy + Delta-G solvation = -3181.989853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.14278 -39.55394 -37.90553 -35.13475 -32.26159 -31.91491 -30.87751 -28.64730 -27.88225 -26.81501 -25.61870 -23.41984 -22.29577 -20.61212 -20.21295 -19.34409 -18.98407 -17.45599 -16.98758 -16.61482 -15.76411 -15.50047 -14.68434 -14.26149 -13.93251 -13.81830 -13.54533 -13.33468 -13.16886 -13.01412 -12.62025 -12.46121 -12.30872 -12.21694 -11.80351 -11.63106 -11.49650 -11.06615 -10.81043 -10.73943 -10.39938 -9.82335 -9.76958 -9.67033 -9.40997 -8.79194 -8.74736 -8.24044 -7.99294 -6.82914 -5.71414 -3.04838 2.22973 2.83758 3.00539 3.26844 3.42645 3.43202 3.48551 3.51460 4.50855 4.64676 4.80675 4.94866 5.14745 5.20463 5.25168 5.31193 5.37969 5.51679 5.54276 5.55507 5.69611 5.74859 5.82569 6.01449 6.19011 6.25803 6.32610 6.34658 6.47936 6.56987 6.71266 6.89439 7.02218 7.15952 7.26834 7.46018 7.56191 7.62774 7.65558 8.04463 8.43134 9.09506 9.75829 10.69123 11.45273 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021087 B = 0.004198 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.505162 B = 6667.702184 C = 7334.253008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.613 5.613 3 C 0.117 3.883 4 C 0.135 3.865 5 H 0.040 0.960 6 C -0.166 4.166 7 C 0.148 3.852 8 N -0.600 5.600 9 C -0.214 4.214 10 H 0.080 0.920 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.911 3.089 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.281 1.281 17 C 0.505 3.495 18 O -0.520 6.520 19 C -0.070 4.070 20 C 0.035 3.965 21 C -0.183 4.183 22 C -0.201 4.201 23 C -0.014 4.014 24 N -0.553 5.553 25 H 0.411 0.589 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.077 0.923 35 H 0.252 0.748 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.738 -17.424 -2.143 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.348 5.348 3 C -0.006 4.006 4 C 0.027 3.973 5 H 0.057 0.943 6 C -0.204 4.204 7 C 0.022 3.978 8 N -0.325 5.325 9 C -0.341 4.341 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.292 3.708 18 O -0.395 6.395 19 C -0.111 4.111 20 C -0.078 4.078 21 C -0.207 4.207 22 C -0.226 4.226 23 C -0.145 4.145 24 N -0.147 5.147 25 H 0.247 0.753 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.114 0.886 37 H 0.129 0.871 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.833 -17.113 -2.143 20.366 hybrid contribution 0.798 0.505 0.093 0.949 sum -10.035 -16.607 -2.050 19.512 Atomic orbital electron populations 1.21812 0.80023 1.03215 1.01556 1.47909 1.06715 1.06471 1.73709 1.21858 0.96941 0.82548 0.99268 1.22396 0.90354 0.91383 0.93161 0.94258 1.23767 0.96809 0.99849 1.00008 1.22140 0.86721 0.99815 0.89099 1.45661 1.38415 1.21008 1.27455 1.18943 1.07336 0.98969 1.08873 0.90247 1.24771 1.00038 0.97025 0.98561 1.69828 1.43591 1.14190 1.29228 0.86128 0.81837 0.78923 0.78988 1.21480 1.21672 1.20613 1.20489 0.88193 0.84910 0.77232 1.90775 1.13984 1.86909 1.47817 1.20174 0.96543 0.89526 1.04829 1.19553 1.02894 0.98368 0.86987 1.20594 1.02714 1.00125 0.97299 1.20842 1.04786 1.03053 0.93950 1.21750 1.00126 0.96698 0.95953 1.41875 1.36558 1.28196 1.08097 0.75300 0.92744 0.91487 0.90584 0.90298 0.90200 0.90524 0.93043 0.96274 0.90478 0.93763 0.88614 0.87121 0.85120 0.84955 0.82128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.24 59.85 0.61 1.33 16 2 N -0.61 -8.83 2.88 -181.57 -0.52 -9.36 16 3 C 0.12 2.17 5.34 -4.04 -0.02 2.14 16 4 C 0.14 2.86 4.27 -72.41 -0.31 2.55 16 5 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 6 C -0.17 -3.10 8.03 -26.08 -0.21 -3.31 16 7 C 0.15 3.56 7.53 -8.38 -0.06 3.50 16 8 N -0.60 -15.82 3.64 -176.85 -0.64 -16.47 16 9 C -0.21 -6.20 10.55 -15.06 -0.16 -6.36 16 10 H 0.08 2.28 7.83 -52.49 -0.41 1.87 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 12 N -0.92 -27.86 11.42 55.49 0.63 -27.23 16 13 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 C 0.51 7.83 7.62 -10.99 -0.08 7.74 16 18 O -0.52 -10.84 15.67 5.56 0.09 -10.75 16 19 C -0.07 -0.75 4.70 -29.03 -0.14 -0.88 16 20 C 0.03 0.44 5.66 -81.79 -0.46 -0.02 16 21 C -0.18 -2.45 10.76 -39.78 -0.43 -2.88 16 22 C -0.20 -2.51 10.86 -39.78 -0.43 -2.94 16 23 C -0.01 -0.16 11.94 -16.75 -0.20 -0.36 16 24 N -0.55 -6.27 6.08 -9.12 -0.06 -6.32 16 25 H 0.41 3.61 8.96 -40.82 -0.37 3.25 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.45 6.45 -51.93 -0.33 0.11 16 28 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 29 H 0.08 1.38 7.77 -51.93 -0.40 0.98 16 30 H 0.08 1.74 7.51 -51.93 -0.39 1.35 16 31 H 0.08 1.36 7.94 -51.93 -0.41 0.95 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 2.04 6.92 -51.93 -0.36 1.68 16 35 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.10 0.77 7.58 -51.93 -0.39 0.38 16 37 H 0.11 0.90 8.04 -51.93 -0.42 0.48 16 38 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 40 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -36.41 335.70 -8.46 -44.86 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.00 Total: 2.16 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.99 Total: 0.21 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.59 Total: -59.38 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.41 -8.46 -44.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488694200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.789 kcal (2) G-P(sol) polarization free energy of solvation -36.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds