Wall clock time and date at job start Mon Mar 30 2020 01:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36947 * 119.99761 * 2 1 4 4 H 1.08000 * 119.99907 * 202.35244 * 3 2 1 5 5 C 1.38812 * 119.99775 * 22.34055 * 3 2 1 6 6 N 1.31614 * 120.00374 * 11.35616 * 5 3 2 7 7 Si 1.86807 * 119.99658 * 191.34793 * 5 3 2 8 8 H 1.48495 * 109.47039 * 60.00576 * 7 5 3 9 9 H 1.48503 * 109.46720 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46989 * 300.00580 * 7 5 3 11 11 C 1.46493 * 120.00486 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47350 * 269.99891 * 11 2 1 13 13 N 1.46507 * 109.47283 * 179.97438 * 12 11 2 14 14 C 1.34772 * 119.99910 * 180.02562 * 13 12 11 15 15 O 1.21630 * 120.00088 * 359.97438 * 14 13 12 16 16 C 1.47263 * 119.99954 * 180.02562 * 14 13 12 17 17 C 1.36766 * 126.94144 * 0.02562 * 16 14 13 18 18 N 1.34656 * 108.39805 * 180.02562 * 17 16 14 19 19 H 0.97001 * 124.85402 * 179.97438 * 18 17 16 20 20 C 1.36448 * 110.29595 * 0.02562 * 18 17 16 21 21 C 1.34484 * 108.85740 * 0.25937 * 20 18 17 22 22 C 1.50698 * 126.83007 * 179.71448 * 21 20 18 23 23 C 1.52995 * 117.50438 * 8.77836 * 22 21 20 24 24 C 1.52994 * 117.50357 * 300.11363 * 22 21 20 25 25 H 1.09006 * 109.46928 * 274.21105 * 1 2 3 26 26 H 1.08997 * 109.47383 * 34.21013 * 1 2 3 27 27 H 1.08998 * 109.46762 * 154.21849 * 1 2 3 28 28 H 0.96998 * 120.00199 * 179.97438 * 6 5 3 29 29 H 1.08997 * 109.47538 * 149.99755 * 11 2 1 30 30 H 1.09007 * 109.46871 * 29.99874 * 11 2 1 31 31 H 1.09005 * 109.47229 * 60.00002 * 12 11 2 32 32 H 1.09000 * 109.47286 * 300.00147 * 12 11 2 33 33 H 0.96993 * 119.99446 * 0.02562 * 13 12 11 34 34 H 1.08003 * 125.80260 * 0.02792 * 17 16 14 35 35 H 1.08000 * 125.56766 * 180.02562 * 20 18 17 36 36 H 1.09004 * 115.54692 * 154.44573 * 22 21 20 37 37 H 1.09006 * 117.49684 * 359.97438 * 23 22 21 38 38 H 1.08997 * 117.50127 * 145.01478 * 23 22 21 39 39 H 1.08997 * 117.49933 * 214.98272 * 24 22 21 40 40 H 1.08998 * 117.49876 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1688 1.2212 -0.3557 5 6 1.5337 2.3430 0.4570 6 7 0.3841 2.2691 1.0936 7 14 2.3365 4.0049 0.1685 8 1 2.4913 4.2332 -1.2906 9 1 1.4847 5.0736 0.7496 10 1 3.6718 4.0289 0.8177 11 6 2.1976 -1.2686 0.0006 12 6 2.4527 -1.7096 1.4432 13 7 3.1848 -2.9787 1.4438 14 6 3.5212 -3.5620 2.6112 15 8 3.2175 -3.0347 3.6643 16 6 4.2576 -4.8373 2.6117 17 6 4.6695 -5.5491 1.5190 18 7 5.3070 -6.6550 1.9477 19 1 5.6965 -7.3296 1.3696 20 6 5.3260 -6.6916 3.3115 21 6 4.6911 -5.6045 3.7844 22 6 4.4716 -5.2445 5.2312 23 6 5.1925 -6.0863 6.2860 24 6 3.6810 -6.2312 6.0927 25 1 -0.3633 0.0755 1.0250 26 1 -0.3634 0.8498 -0.5778 27 1 -0.3633 -0.9254 -0.4470 28 1 -0.0461 3.0776 1.4132 29 1 3.1499 -1.1385 -0.5133 30 1 1.6085 -2.0286 -0.5129 31 1 1.5002 -1.8399 1.9572 32 1 3.0417 -0.9497 1.9567 33 1 3.4273 -3.3989 0.6039 34 1 4.5105 -5.2714 0.4874 35 1 5.7740 -7.4688 3.9129 36 1 4.3435 -4.1818 5.4370 37 1 5.8253 -6.9009 5.9334 38 1 5.5383 -5.5776 7.1858 39 1 3.0330 -5.8176 6.8654 40 1 3.3198 -7.1409 5.6131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492475729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:49 Heat of formation + Delta-G solvation = 57.368248 kcal Electronic energy + Delta-G solvation = -20819.205609 eV Core-core repulsion = 17636.367692 eV Total energy + Delta-G solvation = -3182.837917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.30981 -38.64422 -37.01799 -35.90709 -33.93581 -31.44964 -30.81379 -29.33441 -27.67120 -25.81677 -23.77093 -23.22296 -22.39325 -22.05966 -20.57119 -19.50732 -18.87838 -18.46318 -16.71352 -16.01603 -15.38592 -15.12245 -14.91517 -14.65099 -14.35205 -14.19139 -13.97972 -13.46272 -13.22768 -12.97470 -12.35493 -12.22485 -12.17049 -11.64239 -11.56408 -11.13712 -10.81999 -10.81165 -10.77151 -10.56012 -10.32852 -10.21862 -9.96345 -9.84937 -9.41190 -8.70383 -8.52592 -8.35214 -8.31028 -6.77090 -5.69845 -3.16968 1.80184 2.24778 3.05283 3.42319 3.47118 3.48125 3.72551 3.80881 4.07977 4.54137 4.58924 4.86249 4.90729 5.00218 5.11001 5.18943 5.45433 5.52493 5.57775 5.69178 5.70703 5.83722 5.96262 5.98500 6.08450 6.11551 6.34674 6.36776 6.67050 6.76723 6.80116 6.81385 6.88747 7.11759 7.28833 7.41053 7.76543 7.84181 8.05517 8.41964 8.78934 9.25704 9.87889 10.36127 11.35265 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.003350 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.732611 B = 8356.561250 C = 8734.095180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.597 5.597 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.144 3.856 12 C 0.097 3.903 13 N -0.725 5.725 14 C 0.579 3.421 15 O -0.543 6.543 16 C -0.212 4.212 17 C 0.042 3.958 18 N -0.551 5.551 19 H 0.416 0.584 20 C -0.027 4.027 21 C -0.077 4.077 22 C -0.075 4.075 23 C -0.183 4.183 24 C -0.172 4.172 25 H 0.029 0.971 26 H 0.047 0.953 27 H -0.003 1.003 28 H 0.254 0.746 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.390 0.610 34 H 0.173 0.827 35 H 0.165 0.835 36 H 0.124 0.876 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.756 -21.319 1.610 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.390 4.390 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.016 3.984 12 C -0.028 4.028 13 N -0.376 5.376 14 C 0.366 3.634 15 O -0.421 6.421 16 C -0.222 4.222 17 C -0.094 4.094 18 N -0.146 5.146 19 H 0.252 0.748 20 C -0.154 4.154 21 C -0.084 4.084 22 C -0.093 4.093 23 C -0.220 4.220 24 C -0.209 4.209 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.016 0.984 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.223 0.777 34 H 0.190 0.810 35 H 0.183 0.817 36 H 0.142 0.858 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.434 -20.841 2.357 22.999 hybrid contribution 0.673 0.421 -0.693 1.054 sum 10.107 -20.420 1.664 22.845 Atomic orbital electron populations 1.20843 0.82189 0.95676 0.99483 1.43914 1.02045 1.00356 1.85628 1.19187 0.98129 0.85269 1.36443 0.91269 1.25059 0.97650 0.98642 0.98117 1.70056 1.17779 1.27312 1.39920 0.86302 0.78600 0.83621 0.77806 1.21055 1.21587 1.20865 1.20985 0.96216 0.88850 0.92342 1.22454 0.95721 0.82865 1.01802 1.46020 1.58820 1.25281 1.07502 1.17429 0.78651 0.83267 0.84022 1.90749 1.55168 1.64916 1.31252 1.20502 1.10400 0.98624 0.92705 1.21933 0.99740 0.88755 0.98987 1.41410 1.45719 1.20328 1.07093 0.74754 1.21416 1.08946 1.02235 0.82810 1.19655 1.01567 0.94458 0.92671 1.20413 1.03650 0.98482 0.86771 1.22998 0.95016 1.03031 1.00984 1.22975 0.93880 1.01199 1.02861 0.95224 0.93469 0.98420 0.93597 0.93436 0.94094 0.92289 0.91408 0.77728 0.80999 0.81735 0.85777 0.89220 0.88719 0.88687 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.08 9.01 59.85 0.54 4.62 16 2 N -0.60 -15.19 2.93 -181.12 -0.53 -15.72 16 3 C -0.26 -7.26 9.67 -15.05 -0.15 -7.40 16 4 H 0.07 1.86 7.84 -52.49 -0.41 1.45 16 5 C 0.00 0.11 5.13 -17.43 -0.09 0.02 16 6 N -0.91 -26.91 10.59 55.49 0.59 -26.33 16 7 Si 0.91 22.18 29.57 -169.99 -5.03 17.15 16 8 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 C 0.14 2.91 5.82 -4.05 -0.02 2.89 16 12 C 0.10 1.98 6.00 -4.04 -0.02 1.96 16 13 N -0.73 -11.73 5.55 -61.43 -0.34 -12.07 16 14 C 0.58 10.29 7.81 -12.59 -0.10 10.19 16 15 O -0.54 -11.96 15.41 5.25 0.08 -11.88 16 16 C -0.21 -2.97 6.29 -103.35 -0.65 -3.62 16 17 C 0.04 0.40 11.40 -16.85 -0.19 0.20 16 18 N -0.55 -4.08 5.90 -12.85 -0.08 -4.16 16 19 H 0.42 1.49 8.96 -40.82 -0.37 1.12 16 20 C -0.03 -0.25 11.26 -16.83 -0.19 -0.44 16 21 C -0.08 -1.00 6.02 -102.54 -0.62 -1.62 16 22 C -0.07 -0.99 5.79 -91.78 -0.53 -1.52 16 23 C -0.18 -1.80 10.03 -26.70 -0.27 -2.07 16 24 C -0.17 -1.89 10.24 -26.70 -0.27 -2.16 16 25 H 0.03 0.81 7.42 -51.93 -0.39 0.42 16 26 H 0.05 1.26 7.19 -51.93 -0.37 0.88 16 27 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 28 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 30 H 0.04 0.73 7.86 -51.92 -0.41 0.32 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 33 H 0.39 4.76 7.42 -40.82 -0.30 4.46 16 34 H 0.17 1.07 7.45 -52.48 -0.39 0.68 16 35 H 0.17 1.07 7.16 -52.49 -0.38 0.69 16 36 H 0.12 2.00 7.02 -51.93 -0.36 1.64 16 37 H 0.09 0.72 7.00 -51.93 -0.36 0.36 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -35.19 335.94 -8.62 -43.81 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.81 Total: 3.07 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.56 Total: 1.06 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.36 Total: -58.27 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.19 -8.62 -43.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492475729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.181 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds