Wall clock time and date at job start Mon Mar 30 2020 01:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36947 * 119.99761 * 2 1 4 4 H 1.08000 * 119.99907 * 202.35244 * 3 2 1 5 5 C 1.38812 * 119.99775 * 22.34055 * 3 2 1 6 6 N 1.31614 * 120.00374 * 11.35616 * 5 3 2 7 7 Si 1.86807 * 119.99658 * 191.34793 * 5 3 2 8 8 H 1.48495 * 109.47039 * 60.00576 * 7 5 3 9 9 H 1.48503 * 109.46720 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46989 * 300.00580 * 7 5 3 11 11 C 1.46493 * 120.00486 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47350 * 269.99891 * 11 2 1 13 13 N 1.46507 * 109.47283 * 179.97438 * 12 11 2 14 14 C 1.34772 * 119.99910 * 180.02562 * 13 12 11 15 15 O 1.21630 * 120.00088 * 359.97438 * 14 13 12 16 16 C 1.47263 * 119.99954 * 180.02562 * 14 13 12 17 17 C 1.36766 * 126.94144 * 0.02562 * 16 14 13 18 18 N 1.34656 * 108.39805 * 180.02562 * 17 16 14 19 19 H 0.97001 * 124.85402 * 179.97438 * 18 17 16 20 20 C 1.36448 * 110.29595 * 0.02562 * 18 17 16 21 21 C 1.34484 * 108.85740 * 0.25937 * 20 18 17 22 22 C 1.50698 * 126.83007 * 179.71448 * 21 20 18 23 23 C 1.52995 * 117.50438 * 8.77836 * 22 21 20 24 24 C 1.52994 * 117.50357 * 300.11363 * 22 21 20 25 25 H 1.09006 * 109.46928 * 274.21105 * 1 2 3 26 26 H 1.08997 * 109.47383 * 34.21013 * 1 2 3 27 27 H 1.08998 * 109.46762 * 154.21849 * 1 2 3 28 28 H 0.96998 * 120.00199 * 179.97438 * 6 5 3 29 29 H 1.08997 * 109.47538 * 149.99755 * 11 2 1 30 30 H 1.09007 * 109.46871 * 29.99874 * 11 2 1 31 31 H 1.09005 * 109.47229 * 60.00002 * 12 11 2 32 32 H 1.09000 * 109.47286 * 300.00147 * 12 11 2 33 33 H 0.96993 * 119.99446 * 0.02562 * 13 12 11 34 34 H 1.08003 * 125.80260 * 0.02792 * 17 16 14 35 35 H 1.08000 * 125.56766 * 180.02562 * 20 18 17 36 36 H 1.09004 * 115.54692 * 154.44573 * 22 21 20 37 37 H 1.09006 * 117.49684 * 359.97438 * 23 22 21 38 38 H 1.08997 * 117.50127 * 145.01478 * 23 22 21 39 39 H 1.08997 * 117.49933 * 214.98272 * 24 22 21 40 40 H 1.08998 * 117.49876 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1688 1.2212 -0.3557 5 6 1.5337 2.3430 0.4570 6 7 0.3841 2.2691 1.0936 7 14 2.3365 4.0049 0.1685 8 1 2.4913 4.2332 -1.2906 9 1 1.4847 5.0736 0.7496 10 1 3.6718 4.0289 0.8177 11 6 2.1976 -1.2686 0.0006 12 6 2.4527 -1.7096 1.4432 13 7 3.1848 -2.9787 1.4438 14 6 3.5212 -3.5620 2.6112 15 8 3.2175 -3.0347 3.6643 16 6 4.2576 -4.8373 2.6117 17 6 4.6695 -5.5491 1.5190 18 7 5.3070 -6.6550 1.9477 19 1 5.6965 -7.3296 1.3696 20 6 5.3260 -6.6916 3.3115 21 6 4.6911 -5.6045 3.7844 22 6 4.4716 -5.2445 5.2312 23 6 5.1925 -6.0863 6.2860 24 6 3.6810 -6.2312 6.0927 25 1 -0.3633 0.0755 1.0250 26 1 -0.3634 0.8498 -0.5778 27 1 -0.3633 -0.9254 -0.4470 28 1 -0.0461 3.0776 1.4132 29 1 3.1499 -1.1385 -0.5133 30 1 1.6085 -2.0286 -0.5129 31 1 1.5002 -1.8399 1.9572 32 1 3.0417 -0.9497 1.9567 33 1 3.4273 -3.3989 0.6039 34 1 4.5105 -5.2714 0.4874 35 1 5.7740 -7.4688 3.9129 36 1 4.3435 -4.1818 5.4370 37 1 5.8253 -6.9009 5.9334 38 1 5.5383 -5.5776 7.1858 39 1 3.0330 -5.8176 6.8654 40 1 3.3198 -7.1409 5.6131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492475729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:48 Heat of formation + Delta-G solvation = 32.511321 kcal Electronic energy + Delta-G solvation = -20820.283486 eV Core-core repulsion = 17636.367692 eV Total energy + Delta-G solvation = -3183.915794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.12971 -40.04793 -37.90226 -37.74905 -35.60303 -33.31897 -31.89113 -30.39382 -29.13197 -27.91231 -25.37823 -24.07665 -23.49823 -23.16141 -22.37394 -20.62849 -19.84405 -19.29565 -18.76017 -17.29675 -16.72484 -16.58402 -16.42211 -16.11215 -15.50423 -15.22352 -15.15272 -14.89837 -14.74525 -14.37013 -14.06652 -13.91781 -13.20511 -13.07104 -12.75392 -12.61689 -12.55985 -12.48203 -12.34967 -12.09955 -11.99803 -11.75873 -11.65813 -11.25476 -10.82700 -10.65032 -10.07087 -9.43529 -9.07689 -8.85722 -7.84361 -5.34118 0.83414 1.44666 1.46625 1.49292 1.55837 2.26935 2.47391 2.56727 2.59801 3.17651 3.31175 3.77495 3.81562 4.01262 4.16596 4.23012 4.26362 4.29082 4.34039 4.39105 4.65051 4.71548 4.79146 4.85212 4.85606 5.00752 5.08923 5.17113 5.22083 5.28772 5.32618 5.41146 5.56103 5.64195 5.72632 5.78069 5.98558 6.31532 6.72258 6.82013 7.13279 7.47611 7.84280 8.26654 9.19383 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.003350 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.732611 B = 8356.561250 C = 8734.095180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.615 5.615 3 C -0.270 4.270 4 H 0.077 0.923 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.271 1.271 9 H -0.296 1.296 10 H -0.278 1.278 11 C 0.149 3.851 12 C 0.119 3.881 13 N -0.709 5.709 14 C 0.573 3.427 15 O -0.603 6.603 16 C -0.267 4.267 17 C 0.076 3.924 18 N -0.528 5.528 19 H 0.441 0.559 20 C -0.005 4.005 21 C -0.114 4.114 22 C -0.107 4.107 23 C -0.156 4.156 24 C -0.173 4.173 25 H -0.004 1.004 26 H 0.023 0.977 27 H 0.037 0.963 28 H 0.248 0.752 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.024 0.976 33 H 0.414 0.586 34 H 0.211 0.789 35 H 0.200 0.800 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.092 -24.514 -0.487 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.338 5.338 3 C -0.400 4.400 4 H 0.095 0.905 5 C -0.250 4.250 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.197 1.197 9 H -0.222 1.222 10 H -0.204 1.204 11 C 0.022 3.978 12 C -0.008 4.008 13 N -0.361 5.361 14 C 0.363 3.637 15 O -0.485 6.485 16 C -0.277 4.277 17 C -0.062 4.062 18 N -0.124 5.124 19 H 0.282 0.718 20 C -0.133 4.133 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.192 4.192 24 C -0.210 4.210 25 H 0.014 0.986 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.251 0.749 34 H 0.227 0.773 35 H 0.217 0.783 36 H 0.094 0.906 37 H 0.137 0.863 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.827 -24.120 0.196 26.864 hybrid contribution -0.004 1.284 -0.041 1.285 sum 11.822 -22.836 0.155 25.715 Atomic orbital electron populations 1.20601 0.82471 0.96534 0.97400 1.44184 1.02365 1.01630 1.85612 1.19602 0.98453 0.86448 1.35461 0.90513 1.25887 0.98423 1.02246 0.98464 1.70249 1.19338 1.27642 1.41454 0.85270 0.77473 0.79143 0.78123 1.19702 1.22184 1.20418 1.21136 0.97188 0.87569 0.91957 1.21865 0.93890 0.83808 1.01255 1.45667 1.58154 1.23730 1.08578 1.18135 0.78011 0.84341 0.83183 1.90717 1.57643 1.66798 1.33338 1.20309 1.13721 0.98328 0.95361 1.22326 0.96817 0.87759 0.99317 1.41451 1.44053 1.19938 1.06918 0.71819 1.21765 1.06717 1.01233 0.83626 1.19836 1.03747 0.96285 0.92164 1.20249 1.07013 0.96598 0.88708 1.23105 0.94375 1.02255 0.99507 1.23028 0.94961 1.00834 1.02197 0.98556 0.95828 0.94503 0.94289 0.91526 0.90535 0.95377 0.95735 0.74943 0.77258 0.78299 0.90560 0.86294 0.88403 0.89493 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.89 9.01 127.77 1.15 10.04 16 2 N -0.62 -31.38 2.93 -726.94 -2.13 -33.51 16 3 C -0.27 -15.10 9.67 84.03 0.81 -14.29 16 4 H 0.08 4.09 7.84 -2.91 -0.02 4.07 16 5 C -0.06 -3.19 5.13 84.86 0.44 -2.76 16 6 N -0.94 -57.87 10.59 21.65 0.23 -57.64 16 7 Si 0.97 46.28 29.57 68.60 2.03 48.31 16 8 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 9 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 C 0.15 5.80 5.82 86.38 0.50 6.31 16 12 C 0.12 5.00 6.00 86.38 0.52 5.52 16 13 N -0.71 -22.80 5.55 -466.51 -2.59 -25.39 16 14 C 0.57 21.12 7.81 86.62 0.68 21.80 16 15 O -0.60 -28.92 15.41 -4.13 -0.06 -28.98 16 16 C -0.27 -7.26 6.29 -19.04 -0.12 -7.38 16 17 C 0.08 1.16 11.40 83.91 0.96 2.11 16 18 N -0.53 -5.22 5.90 -194.56 -1.15 -6.37 16 19 H 0.44 0.49 8.96 -92.71 -0.83 -0.34 16 20 C -0.01 -0.08 11.26 83.12 0.94 0.86 16 21 C -0.11 -2.87 6.02 -18.52 -0.11 -2.98 16 22 C -0.11 -2.94 5.79 -11.54 -0.07 -3.01 16 23 C -0.16 -2.86 10.03 30.62 0.31 -2.55 16 24 C -0.17 -3.80 10.24 30.62 0.31 -3.49 16 25 H 0.00 -0.22 7.42 -2.38 -0.02 -0.24 16 26 H 0.02 1.27 7.19 -2.39 -0.02 1.25 16 27 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 28 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 29 H 0.07 2.38 8.03 -2.39 -0.02 2.36 16 30 H 0.08 2.48 7.86 -2.38 -0.02 2.46 16 31 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.41 9.07 7.42 -92.71 -0.69 8.38 16 34 H 0.21 1.45 7.45 -2.91 -0.02 1.43 16 35 H 0.20 1.48 7.16 -2.91 -0.02 1.46 16 36 H 0.08 2.79 7.02 -2.38 -0.02 2.77 16 37 H 0.12 1.46 7.00 -2.38 -0.02 1.45 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -84.07 335.94 2.19 -81.88 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -0.46 Total: 11.51 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 6.31 Total: 10.18 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -5.63 Total: -122.90 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.06 Total: -28.98 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -84.07 2.19 -81.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492475729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.391 kcal (2) G-P(sol) polarization free energy of solvation -84.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds