Wall clock time and date at job start Mon Mar 30 2020 01:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00123 * 2 1 4 4 C 1.52997 * 109.47110 * 269.99619 * 3 2 1 5 5 N 1.46500 * 109.47110 * 180.02562 * 4 3 2 6 6 C 1.36937 * 119.99977 * 180.02562 * 5 4 3 7 7 H 1.08006 * 120.00379 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00163 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99955 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00175 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47123 * 89.99784 * 10 8 6 12 12 H 1.48503 * 109.47093 * 209.99679 * 10 8 6 13 13 H 1.48499 * 109.47138 * 329.99403 * 10 8 6 14 14 C 1.34779 * 119.99712 * 180.02562 * 2 1 3 15 15 O 1.21282 * 119.99927 * 180.02562 * 14 2 1 16 16 C 1.50699 * 120.00033 * 359.97438 * 14 2 1 17 17 C 1.53006 * 109.46866 * 180.02562 * 16 14 2 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 14 19 19 C 1.38654 * 120.79058 * 269.72060 * 18 17 16 20 20 C 1.38199 * 119.16218 * 179.80010 * 19 18 17 21 21 N 1.31872 * 120.76598 * 0.48658 * 20 19 18 22 22 C 1.31867 * 121.72568 * 359.73700 * 21 20 19 23 23 C 1.38211 * 120.76480 * 0.03137 * 22 21 20 24 24 H 1.08998 * 109.47147 * 270.00145 * 1 2 3 25 25 H 1.09001 * 109.46572 * 30.00275 * 1 2 3 26 26 H 1.09003 * 109.47046 * 149.99648 * 1 2 3 27 27 H 1.08993 * 109.47349 * 29.99900 * 3 2 1 28 28 H 1.09005 * 109.47039 * 150.00075 * 3 2 1 29 29 H 1.08998 * 109.47682 * 300.00501 * 4 3 2 30 30 H 1.09005 * 109.46797 * 60.00308 * 4 3 2 31 31 H 0.96995 * 120.00087 * 0.02562 * 5 4 3 32 32 H 0.97001 * 120.00057 * 180.02562 * 9 8 6 33 33 H 1.08993 * 109.47512 * 60.00410 * 16 14 2 34 34 H 1.09000 * 109.47247 * 300.00119 * 16 14 2 35 35 H 1.09000 * 109.47050 * 299.99952 * 17 16 14 36 36 H 1.09001 * 109.46801 * 60.00064 * 17 16 14 37 37 H 1.08000 * 120.41963 * 359.97438 * 19 18 17 38 38 H 1.08005 * 119.61842 * 180.20536 * 20 19 18 39 39 H 1.07994 * 119.62246 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.42046 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1857 2.9787 -1.4425 6 6 3.5277 3.5718 -2.6284 7 1 3.2575 3.1044 -3.5638 8 6 4.2228 4.7734 -2.6284 9 7 4.5526 5.3429 -1.4886 10 14 4.6900 5.5821 -4.2462 11 1 3.6019 6.4975 -4.6745 12 1 5.9457 6.3549 -4.0688 13 1 4.8940 4.5371 -5.2813 14 6 2.1388 -1.1673 -0.0005 15 8 3.3517 -1.1673 -0.0001 16 6 1.3853 -2.4723 -0.0005 17 6 2.3796 -3.6353 -0.0005 18 6 1.6260 -4.9403 0.0001 19 6 1.2765 -5.5576 1.1915 20 6 0.5819 -6.7517 1.1528 21 7 0.2605 -7.3081 0.0013 22 6 0.5803 -6.7520 -1.1508 23 6 1.2707 -5.5553 -1.1907 24 1 -0.3633 0.0000 1.0276 25 1 -0.3632 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5138 29 1 3.0416 0.9507 -1.9563 30 1 1.5001 1.8407 -1.9563 31 1 3.4287 3.3984 -0.6025 32 1 5.0380 6.1827 -1.4886 33 1 0.7583 -2.5299 -0.8902 34 1 0.7589 -2.5302 0.8897 35 1 3.0062 -3.5775 -0.8905 36 1 3.0062 -3.5775 0.8895 37 1 1.5413 -5.1094 2.1378 38 1 0.3031 -7.2371 2.0765 39 1 0.2996 -7.2371 -2.0739 40 1 1.5302 -5.1050 -2.1374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493610107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:45 Heat of formation + Delta-G solvation = 6.488579 kcal Electronic energy + Delta-G solvation = -20360.773855 eV Core-core repulsion = 17175.729630 eV Total energy + Delta-G solvation = -3185.044225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54508 -39.75736 -36.08692 -34.98041 -34.34434 -31.65985 -31.50157 -30.74623 -28.30344 -26.63865 -25.35089 -23.75894 -23.48267 -21.94820 -21.25518 -19.05341 -17.46525 -17.12023 -16.78702 -16.43510 -15.98024 -15.83537 -15.60831 -14.65194 -14.23034 -14.13474 -13.83617 -13.79987 -13.43040 -13.12118 -12.95514 -12.79383 -12.61438 -12.53187 -12.11245 -12.04030 -11.32561 -11.18743 -11.00098 -10.89053 -10.68381 -10.11515 -9.97218 -9.78918 -9.76810 -9.57959 -9.46713 -8.87498 -8.53414 -6.93540 -5.76243 -3.05575 0.82427 0.92478 2.69301 3.04559 3.44160 3.49121 3.51091 3.51732 4.15370 4.21906 4.44145 4.61211 4.65113 4.78462 4.81972 4.85949 4.88649 5.03801 5.24852 5.30091 5.35114 5.42294 5.50155 5.55859 5.61301 5.65086 5.70968 5.83077 5.87010 6.02388 6.09901 6.11772 6.40022 6.53345 6.72910 6.89606 7.46903 7.66533 7.70013 8.25264 8.42323 9.53129 10.09260 10.44327 11.46695 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.002675 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.074090 B =10466.678450 C =10757.969351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.107 3.893 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.509 3.491 15 O -0.533 6.533 16 C -0.131 4.131 17 C -0.070 4.070 18 C -0.034 4.034 19 C -0.170 4.170 20 C 0.098 3.902 21 N -0.492 5.492 22 C 0.099 3.901 23 C -0.170 4.170 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.904 -21.895 5.934 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C -0.016 4.016 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.296 3.704 15 O -0.410 6.410 16 C -0.171 4.171 17 C -0.108 4.108 18 C -0.043 4.043 19 C -0.190 4.190 20 C -0.059 4.059 21 N -0.202 5.202 22 C -0.058 4.058 23 C -0.190 4.190 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.153 0.847 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.688 -22.646 5.764 26.128 hybrid contribution 0.659 1.543 -0.638 1.795 sum -11.029 -21.103 5.126 24.357 Atomic orbital electron populations 1.21821 0.79687 1.03461 1.01664 1.47837 1.06936 1.06432 1.73406 1.21716 0.97483 0.83208 0.99167 1.20898 0.95039 0.89408 0.93180 1.42213 1.67065 1.21656 1.06602 1.19204 1.29404 1.02384 0.85954 0.91213 1.24758 1.01232 0.98074 0.96964 1.69661 1.45010 1.19582 1.23961 0.86156 0.77683 0.79235 0.82921 1.21692 1.21693 1.20745 1.20566 0.88117 0.85269 0.76437 1.90746 1.13843 1.87249 1.49114 1.21636 0.99073 0.91901 1.04481 1.20419 0.96496 0.88517 1.05368 1.20396 0.94837 0.95924 0.93098 1.22112 1.00668 0.97329 0.98920 1.22766 0.94229 0.92609 0.96275 1.67678 1.19695 1.34157 0.98626 1.22777 0.94175 0.92584 0.96264 1.22143 1.00518 0.97278 0.99024 0.92618 0.90494 0.91260 0.90495 0.89688 0.95991 0.96502 0.78261 0.93468 0.88744 0.88885 0.89418 0.89536 0.84708 0.82826 0.82778 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.24 59.85 0.61 1.32 16 2 N -0.61 -8.32 2.87 -181.57 -0.52 -8.84 16 3 C 0.11 1.82 5.52 -4.04 -0.02 1.80 16 4 C 0.14 3.04 6.58 -4.04 -0.03 3.01 16 5 N -0.73 -19.21 5.60 -59.91 -0.34 -19.55 16 6 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 7 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 10 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.51 7.11 7.67 -10.99 -0.08 7.02 16 15 O -0.53 -9.84 15.56 5.56 0.09 -9.75 16 16 C -0.13 -1.19 4.23 -27.88 -0.12 -1.31 16 17 C -0.07 -0.66 4.68 -27.88 -0.13 -0.79 16 18 C -0.03 -0.29 5.17 -104.32 -0.54 -0.83 16 19 C -0.17 -1.32 9.82 -39.44 -0.39 -1.71 16 20 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 21 N -0.49 -4.83 10.36 -13.25 -0.14 -4.97 16 22 C 0.10 0.82 11.18 -17.55 -0.20 0.63 16 23 C -0.17 -1.36 9.82 -39.44 -0.39 -1.75 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 26 H 0.07 0.48 6.44 -51.93 -0.33 0.15 16 27 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.08 1.62 7.42 -51.93 -0.39 1.24 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.09 0.73 7.40 -51.93 -0.38 0.35 16 34 H 0.09 0.68 8.11 -51.93 -0.42 0.25 16 35 H 0.09 0.91 8.06 -51.93 -0.42 0.49 16 36 H 0.09 0.86 8.06 -51.93 -0.42 0.44 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -35.38 342.03 -7.79 -43.17 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.02 Total: 4.55 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -1.72 Total: 0.45 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.27 Total: -61.33 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.38 -7.79 -43.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493610107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.663 kcal (2) G-P(sol) polarization free energy of solvation -35.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds