Wall clock time and date at job start Mon Mar 30 2020 01:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00123 * 2 1 4 4 C 1.52997 * 109.47110 * 269.99619 * 3 2 1 5 5 N 1.46500 * 109.47110 * 180.02562 * 4 3 2 6 6 C 1.36937 * 119.99977 * 180.02562 * 5 4 3 7 7 H 1.08006 * 120.00379 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00163 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99955 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00175 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47123 * 89.99784 * 10 8 6 12 12 H 1.48503 * 109.47093 * 209.99679 * 10 8 6 13 13 H 1.48499 * 109.47138 * 329.99403 * 10 8 6 14 14 C 1.34779 * 119.99712 * 180.02562 * 2 1 3 15 15 O 1.21282 * 119.99927 * 180.02562 * 14 2 1 16 16 C 1.50699 * 120.00033 * 359.97438 * 14 2 1 17 17 C 1.53006 * 109.46866 * 180.02562 * 16 14 2 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 14 19 19 C 1.38654 * 120.79058 * 269.72060 * 18 17 16 20 20 C 1.38199 * 119.16218 * 179.80010 * 19 18 17 21 21 N 1.31872 * 120.76598 * 0.48658 * 20 19 18 22 22 C 1.31867 * 121.72568 * 359.73700 * 21 20 19 23 23 C 1.38211 * 120.76480 * 0.03137 * 22 21 20 24 24 H 1.08998 * 109.47147 * 270.00145 * 1 2 3 25 25 H 1.09001 * 109.46572 * 30.00275 * 1 2 3 26 26 H 1.09003 * 109.47046 * 149.99648 * 1 2 3 27 27 H 1.08993 * 109.47349 * 29.99900 * 3 2 1 28 28 H 1.09005 * 109.47039 * 150.00075 * 3 2 1 29 29 H 1.08998 * 109.47682 * 300.00501 * 4 3 2 30 30 H 1.09005 * 109.46797 * 60.00308 * 4 3 2 31 31 H 0.96995 * 120.00087 * 0.02562 * 5 4 3 32 32 H 0.97001 * 120.00057 * 180.02562 * 9 8 6 33 33 H 1.08993 * 109.47512 * 60.00410 * 16 14 2 34 34 H 1.09000 * 109.47247 * 300.00119 * 16 14 2 35 35 H 1.09000 * 109.47050 * 299.99952 * 17 16 14 36 36 H 1.09001 * 109.46801 * 60.00064 * 17 16 14 37 37 H 1.08000 * 120.41963 * 359.97438 * 19 18 17 38 38 H 1.08005 * 119.61842 * 180.20536 * 20 19 18 39 39 H 1.07994 * 119.62246 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.42046 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1857 2.9787 -1.4425 6 6 3.5277 3.5718 -2.6284 7 1 3.2575 3.1044 -3.5638 8 6 4.2228 4.7734 -2.6284 9 7 4.5526 5.3429 -1.4886 10 14 4.6900 5.5821 -4.2462 11 1 3.6019 6.4975 -4.6745 12 1 5.9457 6.3549 -4.0688 13 1 4.8940 4.5371 -5.2813 14 6 2.1388 -1.1673 -0.0005 15 8 3.3517 -1.1673 -0.0001 16 6 1.3853 -2.4723 -0.0005 17 6 2.3796 -3.6353 -0.0005 18 6 1.6260 -4.9403 0.0001 19 6 1.2765 -5.5576 1.1915 20 6 0.5819 -6.7517 1.1528 21 7 0.2605 -7.3081 0.0013 22 6 0.5803 -6.7520 -1.1508 23 6 1.2707 -5.5553 -1.1907 24 1 -0.3633 0.0000 1.0276 25 1 -0.3632 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5138 29 1 3.0416 0.9507 -1.9563 30 1 1.5001 1.8407 -1.9563 31 1 3.4287 3.3984 -0.6025 32 1 5.0380 6.1827 -1.4886 33 1 0.7583 -2.5299 -0.8902 34 1 0.7589 -2.5302 0.8897 35 1 3.0062 -3.5775 -0.8905 36 1 3.0062 -3.5775 0.8895 37 1 1.5413 -5.1094 2.1378 38 1 0.3031 -7.2371 2.0765 39 1 0.2996 -7.2371 -2.0739 40 1 1.5302 -5.1050 -2.1374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493610107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:45 Heat of formation + Delta-G solvation = -17.342221 kcal Electronic energy + Delta-G solvation = -20361.807236 eV Core-core repulsion = 17175.729630 eV Total energy + Delta-G solvation = -3186.077606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27748 -40.74939 -37.48211 -36.07803 -35.76094 -33.46706 -32.07324 -31.76994 -29.81451 -27.55750 -26.58464 -25.11860 -24.33982 -23.29565 -22.31091 -20.17600 -19.21488 -18.30044 -17.50376 -17.19328 -17.16852 -16.73191 -16.45438 -16.39822 -15.42811 -15.34757 -15.15940 -14.79590 -14.65329 -14.33026 -14.30026 -13.72421 -13.48491 -13.28872 -13.08318 -13.00712 -12.86782 -12.75639 -12.58847 -12.33148 -12.14705 -11.93225 -11.88991 -11.00205 -10.93336 -10.45301 -10.38735 -10.04150 -9.69666 -9.08991 -7.99856 -5.30894 0.24978 0.29933 1.45028 1.47908 1.56338 1.62120 1.98910 2.54362 2.90436 3.33276 3.41393 3.65155 3.83138 3.86625 4.00718 4.05880 4.21184 4.23440 4.24230 4.25986 4.29225 4.36263 4.55172 4.60071 4.71767 4.77112 4.82860 4.96598 4.97448 5.00176 5.07352 5.09541 5.15151 5.40676 5.47554 5.52696 5.83142 6.21698 6.41894 7.07549 7.17665 7.27719 7.99445 8.24647 9.23531 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.002675 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.074090 B =10466.678450 C =10757.969351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.612 5.612 3 C 0.121 3.879 4 C 0.149 3.851 5 N -0.744 5.744 6 C -0.252 4.252 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.281 1.281 12 H -0.293 1.293 13 H -0.272 1.272 14 C 0.501 3.499 15 O -0.588 6.588 16 C -0.117 4.117 17 C -0.064 4.064 18 C -0.041 4.041 19 C -0.170 4.170 20 C 0.089 3.911 21 N -0.519 5.519 22 C 0.089 3.911 23 C -0.173 4.173 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.058 0.942 29 H -0.001 1.001 30 H 0.030 0.970 31 H 0.375 0.625 32 H 0.254 0.746 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.153 0.847 38 H 0.175 0.825 39 H 0.173 0.827 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.783 -22.828 5.591 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.345 5.345 3 C -0.003 4.003 4 C 0.022 3.978 5 N -0.387 5.387 6 C -0.383 4.383 7 H 0.091 0.909 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.207 1.207 12 H -0.219 1.219 13 H -0.197 1.197 14 C 0.291 3.709 15 O -0.469 6.469 16 C -0.156 4.156 17 C -0.102 4.102 18 C -0.049 4.049 19 C -0.190 4.190 20 C -0.067 4.067 21 N -0.228 5.228 22 C -0.067 4.067 23 C -0.193 4.193 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.017 0.983 30 H 0.048 0.952 31 H 0.207 0.793 32 H 0.063 0.937 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.170 0.830 38 H 0.192 0.808 39 H 0.190 0.810 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.634 -23.617 5.414 27.802 hybrid contribution 1.214 1.768 -0.512 2.205 sum -12.420 -21.849 4.902 25.606 Atomic orbital electron populations 1.22148 0.76493 1.04839 1.03693 1.47951 1.08783 1.04945 1.72809 1.21319 0.97366 0.85537 0.96112 1.20951 0.94215 0.86744 0.95924 1.42410 1.67611 1.23109 1.05604 1.19589 1.29128 1.02667 0.86938 0.90890 1.25649 1.01596 0.98860 1.00546 1.69818 1.45941 1.19912 1.26144 0.85070 0.77156 0.78221 0.78863 1.20726 1.21921 1.19663 1.21483 0.87759 0.86703 0.74940 1.90724 1.16489 1.88071 1.51570 1.21639 0.98696 0.88498 1.06800 1.20292 0.96430 0.89322 1.04167 1.20349 0.95168 0.95617 0.93740 1.22307 1.00097 0.97144 0.99420 1.23159 0.94013 0.92814 0.96688 1.67702 1.20620 1.35043 0.99476 1.23120 0.94083 0.92774 0.96709 1.22306 1.00251 0.97250 0.99488 0.90234 0.90678 0.88398 0.88825 0.92323 0.98292 0.95217 0.79265 0.93747 0.86537 0.86006 0.91061 0.90494 0.82977 0.80765 0.80975 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 10.24 127.77 1.31 2.35 16 2 N -0.61 -15.75 2.87 -846.76 -2.43 -18.19 16 3 C 0.12 4.13 5.52 86.38 0.48 4.60 16 4 C 0.15 6.39 6.58 86.38 0.57 6.95 16 5 N -0.74 -39.79 5.60 -343.45 -1.92 -41.71 16 6 C -0.25 -14.63 9.99 84.03 0.84 -13.79 16 7 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 8 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 9 N -0.97 -60.30 13.06 21.65 0.28 -60.01 16 10 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 14 C 0.50 13.57 7.67 87.66 0.67 14.24 16 15 O -0.59 -22.30 15.56 -3.04 -0.05 -22.35 16 16 C -0.12 -1.85 4.23 29.85 0.13 -1.72 16 17 C -0.06 -1.13 4.68 29.85 0.14 -0.99 16 18 C -0.04 -0.61 5.17 -19.67 -0.10 -0.72 16 19 C -0.17 -2.28 9.82 22.36 0.22 -2.06 16 20 C 0.09 1.29 11.18 84.68 0.95 2.24 16 21 N -0.52 -9.40 10.36 -195.84 -2.03 -11.43 16 22 C 0.09 1.35 11.18 84.68 0.95 2.30 16 23 C -0.17 -2.49 9.82 22.36 0.22 -2.27 16 24 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 1.19 8.07 -2.39 -0.02 1.17 16 26 H 0.10 0.93 6.44 -2.39 -0.02 0.91 16 27 H 0.09 2.87 8.07 -2.39 -0.02 2.85 16 28 H 0.06 2.32 7.42 -2.38 -0.02 2.30 16 29 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.38 21.01 7.67 -92.71 -0.71 20.30 16 32 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.12 1.38 7.40 -2.39 -0.02 1.37 16 34 H 0.12 1.29 8.11 -2.39 -0.02 1.27 16 35 H 0.07 1.48 8.06 -2.39 -0.02 1.46 16 36 H 0.08 1.49 8.06 -2.39 -0.02 1.47 16 37 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -77.92 342.03 3.02 -74.89 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.32 Total: 22.63 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 6.83 Total: 7.25 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -6.10 Total: -131.34 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.05 Total: -22.35 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -77.92 3.02 -74.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493610107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.551 kcal (2) G-P(sol) polarization free energy of solvation -77.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds