Wall clock time and date at job start Mon Mar 30 2020 01:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 119.99804 * 2 1 4 4 H 1.07995 * 119.99986 * 212.74107 * 3 2 1 5 5 C 1.38812 * 119.99948 * 32.74625 * 3 2 1 6 6 N 1.31624 * 120.00063 * 6.10779 * 5 3 2 7 7 Si 1.86796 * 119.99967 * 186.11764 * 5 3 2 8 8 H 1.48497 * 109.47208 * 89.99669 * 7 5 3 9 9 H 1.48497 * 109.47237 * 209.99299 * 7 5 3 10 10 H 1.48496 * 109.47164 * 329.99472 * 7 5 3 11 11 C 1.46498 * 120.00248 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46841 * 90.00181 * 11 2 1 13 13 C 1.53005 * 109.47117 * 179.97438 * 12 11 2 14 14 N 1.46502 * 109.46878 * 179.97438 * 13 12 11 15 15 C 1.46492 * 120.00322 * 269.99773 * 14 13 12 16 16 C 1.34777 * 119.99397 * 90.00851 * 14 13 12 17 17 O 1.21516 * 120.00515 * 2.34817 * 16 14 13 18 18 C 1.48174 * 119.99671 * 182.35779 * 16 14 13 19 19 C 1.39311 * 119.72466 * 172.40944 * 18 16 14 20 20 C 1.38584 * 119.05991 * 179.97438 * 19 18 16 21 21 C 1.38633 * 118.48825 * 0.02562 * 20 19 18 22 22 C 1.38559 * 119.35250 * 0.24947 * 21 20 19 23 23 N 1.31523 * 120.89856 * 359.49838 * 22 21 20 24 24 H 1.09001 * 109.46930 * 265.17290 * 1 2 3 25 25 H 1.08993 * 109.47023 * 25.17388 * 1 2 3 26 26 H 1.09002 * 109.46790 * 145.17580 * 1 2 3 27 27 H 0.96999 * 119.99965 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.47300 * 330.00543 * 11 2 1 29 29 H 1.09001 * 109.47270 * 209.99989 * 11 2 1 30 30 H 1.08999 * 109.46878 * 60.00103 * 12 11 2 31 31 H 1.08994 * 109.47202 * 300.00301 * 12 11 2 32 32 H 1.08999 * 109.47057 * 60.00342 * 13 12 11 33 33 H 1.09001 * 109.47238 * 299.99957 * 13 12 11 34 34 H 1.09001 * 109.47489 * 263.71607 * 15 14 13 35 35 H 1.09005 * 109.47029 * 23.71632 * 15 14 13 36 36 H 1.09004 * 109.47129 * 143.70949 * 15 14 13 37 37 H 1.07999 * 120.46642 * 0.02562 * 19 18 16 38 38 H 1.07996 * 120.75719 * 180.02562 * 20 19 18 39 39 H 1.07996 * 120.32043 * 179.97438 * 21 20 19 40 40 H 1.07995 * 119.54534 * 179.74846 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1009 1.2603 -0.5058 5 6 1.6210 2.2926 0.6503 6 7 0.5236 2.1727 1.3671 7 14 2.4668 3.9520 0.5078 8 1 1.9200 4.6876 -0.6605 9 1 2.2262 4.7380 1.7444 10 1 3.9267 3.7495 0.3261 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4418 13 6 3.2182 -3.0356 -1.4413 14 7 3.4618 -3.4593 -2.8223 15 6 2.4853 -4.3060 -3.5119 16 6 4.5846 -3.0702 -3.4584 17 8 5.4148 -2.4036 -2.8727 18 6 4.8065 -3.4551 -4.8719 19 6 5.8863 -2.9213 -5.5718 20 6 6.0811 -3.2911 -6.8931 21 6 5.1885 -4.1820 -7.4690 22 6 4.1330 -4.6688 -6.7148 23 7 3.9743 -4.3047 -5.4610 24 1 -0.3633 -0.0865 1.0240 25 1 -0.3633 0.9300 -0.4371 26 1 -0.3633 -0.8436 -0.5869 27 1 0.1544 2.9458 1.8218 28 1 1.6085 -2.0282 0.5146 29 1 3.1500 -1.1381 0.5143 30 1 3.0416 -0.9514 -1.9559 31 1 1.5002 -1.8414 -1.9556 32 1 2.6295 -3.7953 -0.9271 33 1 4.1706 -2.9046 -0.9276 34 1 2.7901 -5.3497 -3.4340 35 1 1.5052 -4.1785 -3.0523 36 1 2.4339 -4.0198 -4.5624 37 1 6.5624 -2.2298 -5.0912 38 1 6.9094 -2.8944 -7.4613 39 1 5.3121 -4.4899 -8.4967 40 1 3.4334 -5.3597 -7.1615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502152505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:22 Heat of formation + Delta-G solvation = 40.297696 kcal Electronic energy + Delta-G solvation = -21069.977095 eV Core-core repulsion = 17886.398944 eV Total energy + Delta-G solvation = -3183.578151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.87375 -39.02482 -36.23658 -35.26691 -33.10017 -32.16639 -31.52930 -30.02558 -26.81035 -26.12148 -25.62040 -24.02540 -23.70871 -22.06635 -20.19458 -19.83698 -17.50301 -17.13604 -16.54256 -16.27779 -15.58829 -15.56579 -15.04988 -14.70692 -14.13445 -13.89646 -13.70640 -13.66422 -13.17477 -12.82008 -12.77977 -12.52811 -12.35836 -11.96132 -11.63313 -11.19244 -10.85046 -10.78371 -10.68035 -10.36219 -10.29111 -10.18523 -10.10874 -9.85680 -9.62068 -9.48492 -9.34215 -8.52979 -8.37276 -6.49741 -5.67256 -3.20242 0.42576 0.90244 2.70241 3.02326 3.43454 3.49184 3.52432 3.65869 3.90735 4.45829 4.49798 4.57279 4.67973 4.77728 5.03899 5.34349 5.40483 5.43635 5.50232 5.50839 5.67910 5.73090 5.79904 5.90577 6.03562 6.13039 6.18514 6.27610 6.37873 6.57785 6.75216 6.86969 6.95179 7.13498 7.37033 7.42665 7.51878 7.74558 7.91200 8.20262 8.56634 9.34524 9.95136 10.49740 11.39118 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.003630 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.515421 B = 7711.344575 C = 8347.376104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.601 5.601 3 C -0.256 4.256 4 H 0.063 0.937 5 C 0.007 3.993 6 N -0.907 5.907 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.155 3.845 12 C -0.150 4.150 13 C 0.114 3.886 14 N -0.592 5.592 15 C 0.077 3.923 16 C 0.562 3.438 17 O -0.530 6.530 18 C 0.085 3.915 19 C -0.112 4.112 20 C -0.082 4.082 21 C -0.155 4.155 22 C 0.089 3.911 23 N -0.451 5.451 24 H 0.019 0.981 25 H 0.048 0.952 26 H -0.008 1.008 27 H 0.252 0.748 28 H 0.034 0.966 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.716 -16.570 -17.378 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.323 5.323 3 C -0.386 4.386 4 H 0.081 0.919 5 C -0.192 4.192 6 N -0.551 5.551 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.216 1.216 10 H -0.203 1.203 11 C 0.027 3.973 12 C -0.191 4.191 13 C -0.009 4.009 14 N -0.323 5.323 15 C -0.065 4.065 16 C 0.348 3.652 17 O -0.407 6.407 18 C -0.053 4.053 19 C -0.133 4.133 20 C -0.107 4.107 21 C -0.175 4.175 22 C -0.070 4.070 23 N -0.163 5.163 24 H 0.037 0.963 25 H 0.067 0.933 26 H 0.011 0.989 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.167 0.833 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.333 -16.403 -16.403 24.047 hybrid contribution 0.930 1.234 -0.689 1.692 sum 7.263 -15.169 -17.092 23.979 Atomic orbital electron populations 1.20722 0.83211 0.96816 0.97432 1.43776 1.01532 1.00733 1.86290 1.19161 1.04290 0.87895 1.27272 0.91881 1.25262 0.97962 0.99144 0.96800 1.70018 1.22056 1.29134 1.33914 0.86275 0.79436 0.84030 0.76956 1.21474 1.21645 1.20289 1.20643 0.96157 0.88449 0.92030 1.22590 0.99227 0.95220 1.02072 1.21689 1.01503 0.97164 0.80512 1.47810 1.20169 1.49652 1.14673 1.22333 0.90824 0.93724 0.99662 1.17919 0.82211 0.80232 0.84876 1.90810 1.44457 1.39002 1.66391 1.21308 0.93113 0.95704 0.95148 1.22171 0.97330 0.99178 0.94590 1.21651 0.98856 0.95724 0.94514 1.22363 0.95863 0.97709 1.01551 1.22962 0.96439 0.97633 0.89918 1.68138 1.25510 1.11322 1.11369 0.96277 0.93325 0.98927 0.93765 0.94810 0.93349 0.91924 0.92866 0.90669 0.89881 0.92860 0.92117 0.87882 0.83349 0.84099 0.84378 0.82052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.20 9.00 59.85 0.54 4.73 16 2 N -0.60 -16.05 2.89 -181.12 -0.52 -16.57 16 3 C -0.26 -7.47 9.56 -15.06 -0.14 -7.61 16 4 H 0.06 1.84 7.84 -52.49 -0.41 1.43 16 5 C 0.01 0.20 5.16 -17.43 -0.09 0.11 16 6 N -0.91 -27.45 11.04 55.49 0.61 -26.84 16 7 Si 0.90 22.75 29.56 -169.99 -5.02 17.72 16 8 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 9 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.16 3.39 5.69 -4.04 -0.02 3.37 16 12 C -0.15 -2.87 5.86 -26.73 -0.16 -3.02 16 13 C 0.11 1.79 5.40 -4.04 -0.02 1.77 16 14 N -0.59 -8.83 2.87 -182.57 -0.52 -9.36 16 15 C 0.08 0.90 9.31 59.84 0.56 1.46 16 16 C 0.56 9.08 7.66 -12.18 -0.09 8.98 16 17 O -0.53 -10.25 15.91 5.35 0.09 -10.16 16 18 C 0.09 1.11 6.62 -83.01 -0.55 0.56 16 19 C -0.11 -1.24 9.63 -39.05 -0.38 -1.61 16 20 C -0.08 -0.63 10.17 -39.31 -0.40 -1.03 16 21 C -0.15 -1.02 10.11 -39.32 -0.40 -1.42 16 22 C 0.09 0.69 11.18 -17.57 -0.20 0.50 16 23 N -0.45 -4.95 6.04 -9.80 -0.06 -5.01 16 24 H 0.02 0.52 7.74 -51.93 -0.40 0.11 16 25 H 0.05 1.34 7.17 -51.93 -0.37 0.97 16 26 H -0.01 -0.17 8.11 -51.93 -0.42 -0.60 16 27 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 29 H 0.05 1.08 8.04 -51.93 -0.42 0.67 16 30 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.00 8.07 -51.93 -0.42 0.59 16 33 H 0.08 1.40 7.39 -51.93 -0.38 1.02 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.66 8.02 -51.93 -0.42 0.24 16 36 H 0.10 1.19 5.26 -52.08 -0.27 0.92 16 37 H 0.15 1.66 7.66 -52.49 -0.40 1.25 16 38 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 40 H 0.16 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -34.58 335.27 -7.74 -42.32 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -6.01 Total: -3.95 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -1.35 Total: 6.79 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.49 Total: -57.77 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.58 -7.74 -42.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502152505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.621 kcal (2) G-P(sol) polarization free energy of solvation -34.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds