Wall clock time and date at job start Mon Mar 30 2020 01:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 119.99804 * 2 1 4 4 H 1.07995 * 119.99986 * 212.74107 * 3 2 1 5 5 C 1.38812 * 119.99948 * 32.74625 * 3 2 1 6 6 N 1.31624 * 120.00063 * 6.10779 * 5 3 2 7 7 Si 1.86796 * 119.99967 * 186.11764 * 5 3 2 8 8 H 1.48497 * 109.47208 * 89.99669 * 7 5 3 9 9 H 1.48497 * 109.47237 * 209.99299 * 7 5 3 10 10 H 1.48496 * 109.47164 * 329.99472 * 7 5 3 11 11 C 1.46498 * 120.00248 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46841 * 90.00181 * 11 2 1 13 13 C 1.53005 * 109.47117 * 179.97438 * 12 11 2 14 14 N 1.46502 * 109.46878 * 179.97438 * 13 12 11 15 15 C 1.46492 * 120.00322 * 269.99773 * 14 13 12 16 16 C 1.34777 * 119.99397 * 90.00851 * 14 13 12 17 17 O 1.21516 * 120.00515 * 2.34817 * 16 14 13 18 18 C 1.48174 * 119.99671 * 182.35779 * 16 14 13 19 19 C 1.39311 * 119.72466 * 172.40944 * 18 16 14 20 20 C 1.38584 * 119.05991 * 179.97438 * 19 18 16 21 21 C 1.38633 * 118.48825 * 0.02562 * 20 19 18 22 22 C 1.38559 * 119.35250 * 0.24947 * 21 20 19 23 23 N 1.31523 * 120.89856 * 359.49838 * 22 21 20 24 24 H 1.09001 * 109.46930 * 265.17290 * 1 2 3 25 25 H 1.08993 * 109.47023 * 25.17388 * 1 2 3 26 26 H 1.09002 * 109.46790 * 145.17580 * 1 2 3 27 27 H 0.96999 * 119.99965 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.47300 * 330.00543 * 11 2 1 29 29 H 1.09001 * 109.47270 * 209.99989 * 11 2 1 30 30 H 1.08999 * 109.46878 * 60.00103 * 12 11 2 31 31 H 1.08994 * 109.47202 * 300.00301 * 12 11 2 32 32 H 1.08999 * 109.47057 * 60.00342 * 13 12 11 33 33 H 1.09001 * 109.47238 * 299.99957 * 13 12 11 34 34 H 1.09001 * 109.47489 * 263.71607 * 15 14 13 35 35 H 1.09005 * 109.47029 * 23.71632 * 15 14 13 36 36 H 1.09004 * 109.47129 * 143.70949 * 15 14 13 37 37 H 1.07999 * 120.46642 * 0.02562 * 19 18 16 38 38 H 1.07996 * 120.75719 * 180.02562 * 20 19 18 39 39 H 1.07996 * 120.32043 * 179.97438 * 21 20 19 40 40 H 1.07995 * 119.54534 * 179.74846 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1009 1.2603 -0.5058 5 6 1.6210 2.2926 0.6503 6 7 0.5236 2.1727 1.3671 7 14 2.4668 3.9520 0.5078 8 1 1.9200 4.6876 -0.6605 9 1 2.2262 4.7380 1.7444 10 1 3.9267 3.7495 0.3261 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4418 13 6 3.2182 -3.0356 -1.4413 14 7 3.4618 -3.4593 -2.8223 15 6 2.4853 -4.3060 -3.5119 16 6 4.5846 -3.0702 -3.4584 17 8 5.4148 -2.4036 -2.8727 18 6 4.8065 -3.4551 -4.8719 19 6 5.8863 -2.9213 -5.5718 20 6 6.0811 -3.2911 -6.8931 21 6 5.1885 -4.1820 -7.4690 22 6 4.1330 -4.6688 -6.7148 23 7 3.9743 -4.3047 -5.4610 24 1 -0.3633 -0.0865 1.0240 25 1 -0.3633 0.9300 -0.4371 26 1 -0.3633 -0.8436 -0.5869 27 1 0.1544 2.9458 1.8218 28 1 1.6085 -2.0282 0.5146 29 1 3.1500 -1.1381 0.5143 30 1 3.0416 -0.9514 -1.9559 31 1 1.5002 -1.8414 -1.9556 32 1 2.6295 -3.7953 -0.9271 33 1 4.1706 -2.9046 -0.9276 34 1 2.7901 -5.3497 -3.4340 35 1 1.5052 -4.1785 -3.0523 36 1 2.4339 -4.0198 -4.5624 37 1 6.5624 -2.2298 -5.0912 38 1 6.9094 -2.8944 -7.4613 39 1 5.3121 -4.4899 -8.4967 40 1 3.4334 -5.3597 -7.1615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502152505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:21 Heat of formation + Delta-G solvation = 18.556383 kcal Electronic energy + Delta-G solvation = -21070.919869 eV Core-core repulsion = 17886.398944 eV Total energy + Delta-G solvation = -3184.520925 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.76094 -40.05258 -37.93944 -36.80181 -34.32147 -33.46503 -32.56066 -31.67930 -28.09530 -27.83290 -27.28786 -25.19944 -24.45553 -23.55259 -22.02793 -20.93448 -18.78717 -18.44867 -17.98603 -17.13930 -16.91896 -16.61817 -16.49311 -16.03429 -15.64563 -15.31060 -14.93201 -14.58458 -14.50778 -14.44247 -14.27909 -13.90543 -13.33196 -13.16420 -12.98771 -12.80948 -12.67896 -12.57201 -12.51514 -12.26916 -12.19072 -11.91219 -11.43672 -11.37835 -10.92791 -10.66470 -10.25445 -10.15600 -9.65137 -8.64376 -7.89165 -5.45950 -0.35395 0.25965 1.42069 1.42965 1.53294 1.68075 1.94477 2.47174 2.85283 3.06900 3.25585 3.67299 3.72253 3.98118 4.03595 4.06647 4.10292 4.32939 4.41627 4.45630 4.52836 4.59845 4.75005 4.77675 4.84349 4.88820 4.93394 5.06241 5.17413 5.18425 5.24221 5.25521 5.46899 5.56068 5.60508 5.62946 5.72701 6.29427 6.36353 6.71249 7.05795 7.14409 7.83762 8.31125 9.14711 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.003630 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.515421 B = 7711.344575 C = 8347.376104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.621 5.621 3 C -0.273 4.273 4 H 0.053 0.947 5 C -0.043 4.043 6 N -0.934 5.934 7 Si 0.968 3.032 8 H -0.282 1.282 9 H -0.286 1.286 10 H -0.273 1.273 11 C 0.154 3.846 12 C -0.128 4.128 13 C 0.121 3.879 14 N -0.595 5.595 15 C 0.078 3.922 16 C 0.550 3.450 17 O -0.580 6.580 18 C 0.053 3.947 19 C -0.129 4.129 20 C -0.080 4.080 21 C -0.134 4.134 22 C 0.085 3.915 23 N -0.463 5.463 24 H 0.000 1.000 25 H 0.021 0.979 26 H 0.029 0.971 27 H 0.252 0.748 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.023 0.977 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.133 0.867 38 H 0.171 0.829 39 H 0.181 0.819 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.656 -18.352 -20.016 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.344 5.344 3 C -0.403 4.403 4 H 0.071 0.929 5 C -0.239 4.239 6 N -0.579 5.579 7 Si 0.796 3.204 8 H -0.209 1.209 9 H -0.212 1.212 10 H -0.198 1.198 11 C 0.027 3.973 12 C -0.169 4.169 13 C -0.002 4.002 14 N -0.324 5.324 15 C -0.063 4.063 16 C 0.339 3.661 17 O -0.460 6.460 18 C -0.083 4.083 19 C -0.150 4.150 20 C -0.105 4.105 21 C -0.154 4.154 22 C -0.074 4.074 23 N -0.176 5.176 24 H 0.018 0.982 25 H 0.040 0.960 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.151 0.849 38 H 0.189 0.811 39 H 0.199 0.801 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 6.263 -18.228 -19.058 27.106 hybrid contribution 0.951 1.673 -0.012 1.925 sum 7.214 -16.555 -19.070 26.264 Atomic orbital electron populations 1.20517 0.82898 0.96854 0.96626 1.44047 1.02085 1.01644 1.86657 1.19351 1.04211 0.89475 1.27263 0.92924 1.25999 0.98701 1.02542 0.96667 1.70158 1.23148 1.29948 1.34631 0.85267 0.78501 0.79671 0.77004 1.20851 1.21207 1.19822 1.20778 0.95453 0.87272 0.93771 1.22265 0.99165 0.95925 0.99527 1.21515 1.00646 0.96281 0.81741 1.47935 1.20542 1.49626 1.14335 1.22494 0.90359 0.93824 0.99633 1.18574 0.81840 0.79409 0.86321 1.90759 1.46089 1.41289 1.67875 1.20894 0.95195 0.98380 0.93868 1.22224 0.96929 0.99563 0.96313 1.22030 0.99925 0.95529 0.93020 1.22866 0.94002 0.95429 1.03084 1.23678 0.97370 0.97523 0.88797 1.68023 1.25299 1.11152 1.13083 0.98157 0.96019 0.95285 0.93923 0.92220 0.94658 0.95811 0.92314 0.87295 0.91563 0.91402 0.91069 0.87579 0.84936 0.81115 0.80135 0.78436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.10 9.00 127.77 1.15 10.25 16 2 N -0.62 -33.66 2.89 -726.95 -2.10 -35.76 16 3 C -0.27 -16.28 9.56 84.03 0.80 -15.47 16 4 H 0.05 3.19 7.84 -2.91 -0.02 3.17 16 5 C -0.04 -2.56 5.16 84.86 0.44 -2.12 16 6 N -0.93 -57.42 11.04 21.65 0.24 -57.18 16 7 Si 0.97 47.52 29.56 68.60 2.03 49.55 16 8 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 9 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 10 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 11 C 0.15 6.76 5.69 86.38 0.49 7.26 16 12 C -0.13 -4.94 5.86 30.60 0.18 -4.76 16 13 C 0.12 3.81 5.40 86.38 0.47 4.27 16 14 N -0.59 -17.75 2.87 -849.81 -2.44 -20.19 16 15 C 0.08 1.70 9.31 127.77 1.19 2.89 16 16 C 0.55 18.58 7.66 86.88 0.67 19.24 16 17 O -0.58 -24.10 15.91 -3.77 -0.06 -24.16 16 18 C 0.05 1.38 6.62 41.91 0.28 1.66 16 19 C -0.13 -2.87 9.63 22.61 0.22 -2.65 16 20 C -0.08 -1.03 10.17 22.45 0.23 -0.80 16 21 C -0.13 -1.19 10.11 22.44 0.23 -0.96 16 22 C 0.09 1.02 11.18 84.82 0.95 1.97 16 23 N -0.46 -9.37 6.04 -184.91 -1.12 -10.48 16 24 H 0.00 0.01 7.74 -2.39 -0.02 -0.01 16 25 H 0.02 1.19 7.17 -2.39 -0.02 1.17 16 26 H 0.03 1.26 8.11 -2.39 -0.02 1.24 16 27 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 29 H 0.03 1.62 8.04 -2.39 -0.02 1.60 16 30 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.11 2.69 8.07 -2.39 -0.02 2.67 16 33 H 0.07 2.32 7.39 -2.39 -0.02 2.30 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.38 8.02 -2.38 -0.02 1.36 16 36 H 0.11 2.29 5.26 -2.68 -0.01 2.28 16 37 H 0.13 3.23 7.66 -2.91 -0.02 3.21 16 38 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 40 H 0.20 0.82 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -78.70 335.27 4.84 -73.86 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.01 Total: 3.59 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 7.28 Total: 20.77 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -5.42 Total: -123.61 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.06 Total: -24.16 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -78.70 4.84 -73.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502152505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.418 kcal (2) G-P(sol) polarization free energy of solvation -78.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds