Wall clock time and date at job start Mon Mar 30 2020 01:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 120.00018 * 2 1 4 4 N 1.46498 * 109.46975 * 125.00243 * 3 2 1 5 5 C 1.46502 * 119.99968 * 269.99917 * 4 3 2 6 6 C 1.50693 * 109.47405 * 269.99990 * 5 4 3 7 7 H 1.08000 * 119.99806 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00181 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99779 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99935 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47250 * 60.00567 * 10 8 6 12 12 H 1.48501 * 109.46739 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47338 * 299.99895 * 10 8 6 14 14 C 1.34773 * 119.99921 * 90.00227 * 4 3 2 15 15 O 1.21290 * 119.99899 * 179.97438 * 14 4 3 16 16 C 1.50702 * 120.00105 * 359.97438 * 14 4 3 17 17 C 1.53001 * 109.47025 * 180.02562 * 16 14 4 18 18 C 1.50700 * 109.47027 * 180.02562 * 17 16 14 19 19 N 1.30502 * 125.64425 * 270.27259 * 18 17 16 20 20 C 1.34127 * 109.25683 * 180.14781 * 19 18 17 21 21 C 1.34672 * 108.01948 * 359.61488 * 20 19 18 22 22 N 1.35041 * 125.65474 * 89.99384 * 18 17 16 23 23 C 1.46499 * 126.39624 * 0.02562 * 22 18 17 24 24 H 1.07995 * 120.00023 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.00175 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00379 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46876 * 5.00243 * 3 2 1 28 28 H 1.08991 * 109.47190 * 245.00487 * 3 2 1 29 29 H 1.09002 * 109.47208 * 30.00865 * 5 4 3 30 30 H 1.08998 * 109.47069 * 150.00072 * 5 4 3 31 31 H 0.96998 * 119.99583 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.46935 * 59.99782 * 16 14 4 33 33 H 1.08998 * 109.47016 * 299.99820 * 16 14 4 34 34 H 1.08994 * 109.47142 * 60.00173 * 17 16 14 35 35 H 1.09006 * 109.46650 * 299.99882 * 17 16 14 36 36 H 1.08002 * 125.99481 * 179.88589 * 20 19 18 37 37 H 1.07997 * 126.59503 * 180.24939 * 21 20 19 38 38 H 1.09003 * 109.47221 * 270.01947 * 23 22 18 39 39 H 1.09003 * 109.47097 * 30.02049 * 23 22 18 40 40 H 1.09001 * 109.46668 * 150.02021 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3033 3.8370 1.6366 8 6 2.5185 4.0666 3.6084 9 7 1.9590 3.4657 4.6358 10 14 2.8716 5.8996 3.6770 11 1 2.1357 6.5867 2.5854 12 1 2.4309 6.4398 4.9882 13 1 4.3294 6.1294 3.5123 14 6 4.2497 0.8662 0.9823 15 8 5.0200 0.8887 1.9189 16 6 4.6968 0.3174 -0.3481 17 6 6.1530 -0.1412 -0.2472 18 6 6.6004 -0.6893 -1.5778 19 7 6.4969 -1.9323 -1.9618 20 6 6.9994 -2.0562 -3.1992 21 6 7.4228 -0.8424 -3.6004 22 7 7.1699 0.0251 -2.5722 23 6 7.4629 1.4604 -2.5536 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9313 29 1 1.4888 1.6965 2.5460 30 1 3.0990 1.3602 3.2259 31 1 1.7295 3.9745 5.4291 32 1 4.6118 1.0938 -1.1085 33 1 4.0677 -0.5296 -0.6218 34 1 6.2375 -0.9176 0.5130 35 1 6.7824 0.7056 0.0267 36 1 7.0510 -2.9685 -3.7749 37 1 7.8746 -0.5998 -4.5509 38 1 6.6058 2.0112 -2.9411 39 1 7.6656 1.7767 -1.5304 40 1 8.3352 1.6611 -3.1756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521618311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:06 Heat of formation + Delta-G solvation = 42.951747 kcal Electronic energy + Delta-G solvation = -21271.309009 eV Core-core repulsion = 18087.845946 eV Total energy + Delta-G solvation = -3183.463063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.12689 -39.13450 -35.72072 -34.12533 -33.62460 -33.01367 -32.04258 -29.19848 -27.60108 -27.04852 -25.53654 -24.52969 -22.26425 -21.42392 -19.96178 -19.64095 -18.34453 -17.19462 -16.51553 -16.21592 -15.83352 -15.41112 -15.27663 -14.60259 -14.37645 -14.10207 -13.81996 -13.38126 -13.14948 -13.04144 -12.78834 -12.62610 -12.32972 -12.04648 -11.76981 -11.64608 -11.25746 -11.11204 -10.91124 -10.86574 -10.58096 -10.19876 -9.98644 -9.67119 -9.66394 -9.16677 -8.96196 -8.43781 -8.39022 -7.69106 -6.04449 -4.09489 1.96579 2.47719 2.70389 3.10857 3.30012 3.34841 3.35757 3.42907 3.96951 4.41513 4.51363 4.56769 4.72811 4.91337 5.07906 5.14170 5.19878 5.24529 5.29319 5.33591 5.39161 5.45238 5.54962 5.64648 5.78453 6.00885 6.03411 6.18321 6.20831 6.25367 6.70692 6.82808 6.93383 7.09678 7.10416 7.45955 7.54678 7.91642 8.09449 8.23286 8.40583 8.88936 9.07517 9.55325 11.03645 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018241 B = 0.004420 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.614824 B = 6332.643440 C = 7210.993672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.168 4.168 3 C 0.137 3.863 4 N -0.593 5.593 5 C 0.247 3.753 6 C -0.527 4.527 7 H 0.056 0.944 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.507 3.493 15 O -0.541 6.541 16 C -0.133 4.133 17 C -0.020 4.020 18 C 0.216 3.784 19 N -0.491 5.491 20 C -0.030 4.030 21 C -0.067 4.067 22 N -0.459 5.459 23 C 0.068 3.932 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.867 -5.475 -17.408 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.187 4.187 3 C 0.013 3.987 4 N -0.324 5.324 5 C 0.128 3.872 6 C -0.566 4.566 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.293 3.707 15 O -0.419 6.419 16 C -0.174 4.174 17 C -0.059 4.059 18 C -0.046 4.046 19 N -0.209 5.209 20 C -0.178 4.178 21 C -0.200 4.200 22 N -0.141 5.141 23 C -0.075 4.075 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.185 0.815 37 H 0.189 0.811 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.903 -5.881 -16.236 18.249 hybrid contribution 0.427 1.680 -0.647 1.850 sum 6.329 -4.202 -16.882 18.513 Atomic orbital electron populations 1.23808 0.95848 1.01727 1.00709 1.23438 0.96419 0.99102 0.99763 1.20574 0.93104 0.95354 0.89680 1.48220 1.10482 1.60075 1.13584 1.19272 0.95433 0.93690 0.78814 1.21384 1.40667 0.93349 1.01203 0.92579 1.24932 0.95079 0.98686 0.95354 1.69927 1.41895 1.36237 1.05190 0.86573 0.78757 0.84980 0.77171 1.20296 1.21168 1.20228 1.20233 0.82439 0.78554 0.89443 1.90680 1.52585 1.56526 1.42060 1.21654 0.96620 1.02016 0.97129 1.19760 0.95277 1.01864 0.89000 1.23422 1.00498 0.87443 0.93230 1.70285 1.21516 1.16411 1.12717 1.22293 1.04197 0.97378 0.93934 1.22655 1.11005 0.91050 0.95247 1.45349 1.45950 1.09258 1.13581 1.22105 1.02622 0.77723 1.05042 0.88769 0.88344 0.87653 0.89510 0.90926 0.94994 0.93830 0.92654 0.89890 0.88842 0.87902 0.89606 0.81507 0.81114 0.90279 0.88992 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 14.32 29.02 0.42 -2.02 16 2 C -0.17 -2.45 9.74 -36.02 -0.35 -2.80 16 3 C 0.14 2.21 5.65 -5.19 -0.03 2.19 16 4 N -0.59 -12.35 2.44 -176.43 -0.43 -12.78 16 5 C 0.25 6.43 5.16 -5.20 -0.03 6.40 16 6 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 7 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 10 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.51 10.22 7.67 -10.99 -0.08 10.14 16 15 O -0.54 -13.17 15.56 5.55 0.09 -13.09 16 16 C -0.13 -1.96 4.24 -27.88 -0.12 -2.08 16 17 C -0.02 -0.28 4.81 -27.88 -0.13 -0.42 16 18 C 0.22 2.99 7.16 -155.42 -1.11 1.87 16 19 N -0.49 -7.43 11.25 -10.81 -0.12 -7.55 16 20 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 21 C -0.07 -0.68 11.58 -16.56 -0.19 -0.88 16 22 N -0.46 -5.11 3.15 -121.27 -0.38 -5.49 16 23 C 0.07 0.52 10.97 59.85 0.66 1.17 16 24 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 25 H 0.10 1.28 7.84 -52.48 -0.41 0.87 16 26 H 0.11 1.49 7.83 -52.49 -0.41 1.07 16 27 H 0.09 1.46 7.72 -51.93 -0.40 1.06 16 28 H 0.07 0.98 6.44 -51.93 -0.33 0.64 16 29 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.08 1.07 7.40 -51.93 -0.38 0.69 16 33 H 0.09 1.32 7.77 -51.93 -0.40 0.91 16 34 H 0.10 1.61 8.10 -51.93 -0.42 1.19 16 35 H 0.09 1.19 7.02 -51.93 -0.36 0.83 16 36 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.71 7.05 -51.93 -0.37 0.35 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -34.69 343.80 -7.52 -42.21 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.96 Total: 1.11 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.61 Total: -0.41 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.20 Total: -51.55 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.69 -7.52 -42.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521618311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.164 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds