Wall clock time and date at job start Mon Mar 30 2020 01:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 120.00018 * 2 1 4 4 N 1.46498 * 109.46975 * 125.00243 * 3 2 1 5 5 C 1.46502 * 119.99968 * 269.99917 * 4 3 2 6 6 C 1.50693 * 109.47405 * 269.99990 * 5 4 3 7 7 H 1.08000 * 119.99806 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00181 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99779 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99935 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47250 * 60.00567 * 10 8 6 12 12 H 1.48501 * 109.46739 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47338 * 299.99895 * 10 8 6 14 14 C 1.34773 * 119.99921 * 90.00227 * 4 3 2 15 15 O 1.21290 * 119.99899 * 179.97438 * 14 4 3 16 16 C 1.50702 * 120.00105 * 359.97438 * 14 4 3 17 17 C 1.53001 * 109.47025 * 180.02562 * 16 14 4 18 18 C 1.50700 * 109.47027 * 180.02562 * 17 16 14 19 19 N 1.30502 * 125.64425 * 270.27259 * 18 17 16 20 20 C 1.34127 * 109.25683 * 180.14781 * 19 18 17 21 21 C 1.34672 * 108.01948 * 359.61488 * 20 19 18 22 22 N 1.35041 * 125.65474 * 89.99384 * 18 17 16 23 23 C 1.46499 * 126.39624 * 0.02562 * 22 18 17 24 24 H 1.07995 * 120.00023 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.00175 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00379 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46876 * 5.00243 * 3 2 1 28 28 H 1.08991 * 109.47190 * 245.00487 * 3 2 1 29 29 H 1.09002 * 109.47208 * 30.00865 * 5 4 3 30 30 H 1.08998 * 109.47069 * 150.00072 * 5 4 3 31 31 H 0.96998 * 119.99583 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.46935 * 59.99782 * 16 14 4 33 33 H 1.08998 * 109.47016 * 299.99820 * 16 14 4 34 34 H 1.08994 * 109.47142 * 60.00173 * 17 16 14 35 35 H 1.09006 * 109.46650 * 299.99882 * 17 16 14 36 36 H 1.08002 * 125.99481 * 179.88589 * 20 19 18 37 37 H 1.07997 * 126.59503 * 180.24939 * 21 20 19 38 38 H 1.09003 * 109.47221 * 270.01947 * 23 22 18 39 39 H 1.09003 * 109.47097 * 30.02049 * 23 22 18 40 40 H 1.09001 * 109.46668 * 150.02021 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3033 3.8370 1.6366 8 6 2.5185 4.0666 3.6084 9 7 1.9590 3.4657 4.6358 10 14 2.8716 5.8996 3.6770 11 1 2.1357 6.5867 2.5854 12 1 2.4309 6.4398 4.9882 13 1 4.3294 6.1294 3.5123 14 6 4.2497 0.8662 0.9823 15 8 5.0200 0.8887 1.9189 16 6 4.6968 0.3174 -0.3481 17 6 6.1530 -0.1412 -0.2472 18 6 6.6004 -0.6893 -1.5778 19 7 6.4969 -1.9323 -1.9618 20 6 6.9994 -2.0562 -3.1992 21 6 7.4228 -0.8424 -3.6004 22 7 7.1699 0.0251 -2.5722 23 6 7.4629 1.4604 -2.5536 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9313 29 1 1.4888 1.6965 2.5460 30 1 3.0990 1.3602 3.2259 31 1 1.7295 3.9745 5.4291 32 1 4.6118 1.0938 -1.1085 33 1 4.0677 -0.5296 -0.6218 34 1 6.2375 -0.9176 0.5130 35 1 6.7824 0.7056 0.0267 36 1 7.0510 -2.9685 -3.7749 37 1 7.8746 -0.5998 -4.5509 38 1 6.6058 2.0112 -2.9411 39 1 7.6656 1.7767 -1.5304 40 1 8.3352 1.6611 -3.1756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521618311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:06 Heat of formation + Delta-G solvation = 21.636931 kcal Electronic energy + Delta-G solvation = -21272.233289 eV Core-core repulsion = 18087.845946 eV Total energy + Delta-G solvation = -3184.387343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.00980 -40.76060 -37.27289 -35.27702 -34.92429 -34.49504 -33.66258 -30.48528 -29.19734 -27.82808 -26.91891 -26.05439 -24.03098 -22.26250 -21.18076 -20.60447 -19.87450 -18.62646 -18.19339 -17.48958 -17.29951 -16.63366 -16.57793 -16.12570 -15.73763 -15.33341 -14.91140 -14.52747 -14.35497 -14.14189 -13.92723 -13.80203 -13.62450 -13.47955 -13.23795 -12.96021 -12.92996 -12.82216 -12.53873 -12.28803 -12.19222 -12.07789 -11.67983 -10.91999 -10.65139 -10.62622 -10.52654 -10.32071 -9.46361 -9.28485 -8.20280 -6.35373 1.09990 1.32609 1.38352 1.42524 1.49863 1.82121 1.92998 2.16140 2.36338 2.52812 3.09514 3.39514 3.76779 3.91363 4.00252 4.01336 4.12741 4.17262 4.25274 4.37996 4.43763 4.55240 4.61918 4.69879 4.70693 4.84153 4.94902 5.02022 5.05060 5.06249 5.24923 5.39946 5.53138 5.71692 5.76808 5.88982 5.95599 6.07838 6.25432 6.70169 6.78265 7.19346 7.29246 7.46883 8.86991 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018241 B = 0.004420 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.614824 B = 6332.643440 C = 7210.993672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.186 4.186 3 C 0.135 3.865 4 N -0.598 5.598 5 C 0.263 3.737 6 C -0.542 4.542 7 H 0.057 0.943 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.969 3.031 11 H -0.259 1.259 12 H -0.281 1.281 13 H -0.275 1.275 14 C 0.500 3.500 15 O -0.593 6.593 16 C -0.111 4.111 17 C -0.011 4.011 18 C 0.193 3.807 19 N -0.528 5.528 20 C -0.059 4.059 21 C -0.046 4.046 22 N -0.456 5.456 23 C 0.059 3.941 24 H 0.115 0.885 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.019 0.981 30 H -0.004 1.004 31 H 0.266 0.734 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.186 0.814 37 H 0.213 0.787 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.208 -4.305 -20.467 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.205 4.205 3 C 0.013 3.987 4 N -0.328 5.328 5 C 0.142 3.858 6 C -0.580 4.580 7 H 0.076 0.924 8 C -0.192 4.192 9 N -0.570 5.570 10 Si 0.793 3.207 11 H -0.184 1.184 12 H -0.206 1.206 13 H -0.201 1.201 14 C 0.289 3.711 15 O -0.474 6.474 16 C -0.152 4.152 17 C -0.050 4.050 18 C -0.069 4.069 19 N -0.248 5.248 20 C -0.206 4.206 21 C -0.179 4.179 22 N -0.138 5.138 23 C -0.082 4.082 24 H 0.133 0.867 25 H 0.119 0.881 26 H 0.128 0.872 27 H 0.097 0.903 28 H 0.124 0.876 29 H 0.037 0.963 30 H 0.014 0.986 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.203 0.797 37 H 0.229 0.771 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.222 -4.708 -19.343 20.858 hybrid contribution 0.310 1.254 0.262 1.318 sum 6.533 -3.454 -19.081 20.462 Atomic orbital electron populations 1.24041 0.95510 1.02870 0.98324 1.23351 0.96886 0.98408 1.01880 1.20806 0.92719 0.96120 0.89069 1.48209 1.11741 1.59747 1.13075 1.18698 0.93758 0.92874 0.80453 1.21681 1.40637 0.94249 1.01479 0.92428 1.25883 0.94646 1.03834 0.94837 1.70062 1.42817 1.38246 1.05832 0.85456 0.78594 0.78881 0.77808 1.18376 1.20637 1.20079 1.21167 0.81540 0.77483 0.90875 1.90649 1.53952 1.58497 1.44290 1.21525 0.96924 1.02779 0.93941 1.19531 0.95013 1.01099 0.89384 1.23019 1.02583 0.87750 0.93554 1.70193 1.22641 1.17466 1.14483 1.22764 1.05193 0.99258 0.93432 1.23291 1.08706 0.90040 0.95864 1.45551 1.44753 1.10543 1.12933 1.22395 1.04478 0.75770 1.05544 0.86728 0.88110 0.87190 0.90294 0.87634 0.96329 0.98607 0.92469 0.87052 0.87694 0.90282 0.89619 0.79717 0.77073 0.88945 0.89574 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 14.32 67.79 0.97 -3.26 16 2 C -0.19 -5.21 9.74 25.65 0.25 -4.96 16 3 C 0.13 4.24 5.65 85.64 0.48 4.72 16 4 N -0.60 -25.35 2.44 -830.50 -2.03 -27.37 16 5 C 0.26 14.32 5.16 85.63 0.44 14.76 16 6 C -0.54 -30.92 9.39 25.60 0.24 -30.68 16 7 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 8 C 0.01 0.39 5.46 84.66 0.46 0.86 16 9 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 10 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 C 0.50 20.61 7.67 87.66 0.67 21.28 16 15 O -0.59 -30.32 15.56 -3.06 -0.05 -30.36 16 16 C -0.11 -3.19 4.24 29.85 0.13 -3.06 16 17 C -0.01 -0.31 4.81 29.85 0.14 -0.17 16 18 C 0.19 5.14 7.16 138.13 0.99 6.13 16 19 N -0.53 -15.63 11.25 -188.13 -2.12 -17.75 16 20 C -0.06 -1.32 11.87 83.52 0.99 -0.33 16 21 C -0.05 -0.78 11.58 83.09 0.96 0.18 16 22 N -0.46 -8.96 3.15 -537.60 -1.69 -10.65 16 23 C 0.06 0.72 10.97 127.77 1.40 2.12 16 24 H 0.11 2.39 8.06 -2.91 -0.02 2.37 16 25 H 0.10 2.46 7.84 -2.91 -0.02 2.44 16 26 H 0.11 2.98 7.83 -2.91 -0.02 2.96 16 27 H 0.08 2.60 7.72 -2.39 -0.02 2.58 16 28 H 0.11 2.58 6.44 -2.39 -0.02 2.56 16 29 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 30 H 0.00 -0.27 7.42 -2.39 -0.02 -0.28 16 31 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.11 2.58 7.40 -2.39 -0.02 2.56 16 33 H 0.10 2.83 7.77 -2.39 -0.02 2.81 16 34 H 0.08 2.62 8.10 -2.39 -0.02 2.61 16 35 H 0.09 2.42 7.02 -2.38 -0.02 2.40 16 36 H 0.19 3.13 8.06 -2.91 -0.02 3.10 16 37 H 0.21 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 1.17 7.05 -2.39 -0.02 1.15 16 40 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -78.71 343.80 5.57 -73.14 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.01 Total: 15.30 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 8.13 Total: 7.60 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -5.55 Total: -111.95 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.05 Total: -30.36 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -78.71 5.57 -73.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521618311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.774 kcal (2) G-P(sol) polarization free energy of solvation -78.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds