Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47162 * 2 1 4 4 H 1.09000 * 109.47044 * 305.95531 * 3 2 1 5 5 C 1.50705 * 109.47257 * 185.95793 * 3 2 1 6 6 H 1.07993 * 119.99777 * 245.26088 * 5 3 2 7 7 C 1.37879 * 119.99648 * 65.26025 * 5 3 2 8 8 N 1.31517 * 119.99680 * 192.60898 * 7 5 3 9 9 Si 1.86796 * 120.00392 * 12.60900 * 7 5 3 10 10 H 1.48504 * 109.47088 * 94.53870 * 9 7 5 11 11 H 1.48501 * 109.47358 * 214.53843 * 9 7 5 12 12 H 1.48501 * 109.47351 * 334.53992 * 9 7 5 13 13 N 1.46895 * 109.46840 * 65.95750 * 3 2 1 14 14 C 1.46899 * 110.99852 * 200.08154 * 13 3 2 15 15 Si 1.86294 * 109.47293 * 95.86794 * 14 13 3 16 16 C 1.86300 * 109.47196 * 54.19747 * 15 14 13 17 17 C 1.86303 * 109.47036 * 294.19824 * 15 14 13 18 18 C 1.86809 * 109.47212 * 174.19871 * 15 14 13 19 19 C 1.38236 * 119.99732 * 269.72275 * 18 15 14 20 20 C 1.38235 * 119.99574 * 180.32579 * 19 18 15 21 21 C 1.38227 * 119.99968 * 359.94696 * 20 19 18 22 22 C 1.38231 * 120.00574 * 0.03346 * 21 20 19 23 23 C 1.38227 * 119.99802 * 90.00024 * 18 15 14 24 24 H 1.09000 * 109.47484 * 65.08647 * 1 2 3 25 25 H 1.09004 * 109.47215 * 185.08407 * 1 2 3 26 26 H 1.08996 * 109.47113 * 305.08680 * 1 2 3 27 27 H 1.09010 * 109.46861 * 240.00370 * 2 1 3 28 28 H 1.08999 * 109.47212 * 120.00494 * 2 1 3 29 29 H 0.96998 * 120.00418 * 180.02562 * 8 7 5 30 30 H 1.00903 * 111.00291 * 76.13043 * 13 3 2 31 31 H 1.08996 * 109.47191 * 335.86569 * 14 13 3 32 32 H 1.09001 * 109.47305 * 215.87045 * 14 13 3 33 33 H 1.09001 * 109.47338 * 179.97438 * 16 15 14 34 34 H 1.08997 * 109.47093 * 300.00398 * 16 15 14 35 35 H 1.09002 * 109.46918 * 60.00453 * 16 15 14 36 36 H 1.08991 * 109.47094 * 305.19712 * 17 15 14 37 37 H 1.08998 * 109.46718 * 65.20050 * 17 15 14 38 38 H 1.09002 * 109.46878 * 185.19727 * 17 15 14 39 39 H 1.08003 * 119.99933 * 0.28102 * 19 18 15 40 40 H 1.07998 * 119.99382 * 179.97438 * 20 19 18 41 41 H 1.08008 * 119.99875 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.00387 * 179.97438 * 22 21 20 43 43 H 1.08004 * 120.00436 * 359.72476 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5922 1.9862 -0.8319 5 6 3.5398 1.4451 -0.1475 6 1 4.1609 1.8078 0.6581 7 6 4.1188 0.9844 -1.3109 8 7 5.4126 0.7520 -1.3542 9 14 3.0659 0.6902 -2.8255 10 1 3.0992 1.8950 -3.6931 11 1 3.5949 -0.4760 -3.5774 12 1 1.6663 0.4179 -2.4102 13 7 1.6712 2.0922 1.2648 14 6 1.7033 3.5550 1.1342 15 14 -0.0112 4.1833 0.7647 16 6 -1.1939 3.5602 2.0623 17 6 -0.5490 3.5717 -0.9109 18 6 -0.0051 6.0514 0.7732 19 6 -0.2622 6.7380 1.9451 20 6 -0.2644 8.1203 1.9499 21 6 -0.0083 8.8159 0.7832 22 6 0.2493 8.1293 -0.3886 23 6 0.2509 6.7469 -0.3935 24 1 -0.3634 0.4329 -0.9320 25 1 -0.3634 -1.0237 0.0911 26 1 -0.3633 0.5907 0.8409 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 5.8201 0.4282 -2.1727 30 1 2.2679 1.7832 2.0175 31 1 2.3749 3.8326 0.3218 32 1 2.0587 3.9953 2.0658 33 1 -2.1970 3.9282 1.8464 34 1 -1.1974 2.4703 2.0573 35 1 -0.8793 3.9181 3.0426 36 1 0.1919 3.8580 -1.6571 37 1 -0.6417 2.4859 -0.8887 38 1 -1.5121 4.0134 -1.1669 39 1 -0.4622 6.1944 2.8567 40 1 -0.4657 8.6567 2.8654 41 1 -0.0095 9.8960 0.7870 42 1 0.4490 8.6728 -1.3003 43 1 0.4518 6.2105 -1.3091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559892884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = -19.151510 kcal Electronic energy + Delta-G solvation = -19581.102694 eV Core-core repulsion = 16861.693422 eV Total energy + Delta-G solvation = -2719.409271 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.156 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.70438 -36.31237 -32.21143 -31.43089 -30.81246 -30.59178 -27.96543 -27.22706 -26.99344 -23.76028 -22.26239 -22.16887 -21.85725 -19.63866 -17.09377 -16.91055 -15.05421 -14.96145 -14.63127 -14.32572 -13.86121 -13.32181 -13.28922 -13.25579 -12.91806 -12.79810 -12.50985 -12.29720 -12.19458 -11.97293 -11.82604 -11.70847 -11.52150 -11.12581 -10.96138 -10.94395 -10.77242 -10.25895 -9.89259 -9.76903 -9.57441 -9.53761 -9.42789 -9.12023 -8.79255 -8.68787 -8.45825 -7.04521 -6.11108 -4.07654 1.38958 1.53053 3.02045 3.18784 3.23219 3.26988 3.37353 3.40850 3.95246 4.02225 4.41454 5.02851 5.06767 5.18027 5.21887 5.54410 5.58148 5.66276 5.91976 5.96266 6.00872 6.02265 6.04130 6.12078 6.13794 6.15512 6.19192 6.35015 6.52207 6.57072 6.66202 6.68284 6.77570 6.79108 6.83622 6.91436 7.07887 7.15080 7.25740 7.39228 7.65071 8.10580 8.45181 8.53522 8.96079 9.55656 11.02233 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.005335 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.724938 B = 5247.384218 C = 5762.617746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.179 3.821 4 H 0.036 0.964 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.076 3.924 8 N -0.896 5.896 9 Si 0.858 3.142 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.244 1.244 13 N -0.661 5.661 14 C -0.225 4.225 15 Si 1.075 2.925 16 C -0.432 4.432 17 C -0.448 4.448 18 C -0.366 4.366 19 C -0.090 4.090 20 C -0.137 4.137 21 C -0.118 4.118 22 C -0.135 4.135 23 C -0.088 4.088 24 H 0.039 0.961 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.262 0.738 30 H 0.327 0.673 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.778 10.590 4.269 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.070 3.930 4 H 0.054 0.946 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.685 3.315 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.168 1.168 13 N -0.290 5.290 14 C -0.403 4.403 15 Si 1.263 2.737 16 C -0.540 4.540 17 C -0.555 4.555 18 C -0.407 4.407 19 C -0.108 4.108 20 C -0.155 4.155 21 C -0.136 4.136 22 C -0.153 4.153 23 C -0.106 4.106 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.284 10.550 4.036 18.210 hybrid contribution 0.922 0.215 -1.047 1.412 sum -13.362 10.765 2.989 17.417 Atomic orbital electron populations 1.21850 0.98095 0.99512 1.01174 1.21846 0.93306 0.99301 1.00641 1.19652 0.94118 0.90794 0.88477 0.94625 1.21755 0.90930 1.43202 1.02562 0.91231 1.24972 0.94662 0.94235 0.98840 1.69982 1.10933 1.44826 1.27612 0.87275 0.82786 0.77931 0.83507 1.20826 1.21419 1.16800 1.60907 1.56857 1.03259 1.07947 1.26821 1.15627 0.94251 1.03605 0.78091 0.68387 0.59644 0.67573 1.25960 1.09411 1.07232 1.11442 1.26200 1.04657 1.07249 1.17443 1.27640 1.00782 1.17976 0.94348 1.21102 0.97650 0.93931 0.98086 1.21202 1.01558 0.94889 0.97854 1.21113 0.99871 0.99373 0.93253 1.21229 1.01207 0.94934 0.97931 1.21154 0.97078 0.93957 0.98380 0.94150 0.94933 0.91783 0.93108 0.92980 0.92818 0.85662 0.92536 0.92748 0.92370 0.90022 0.91849 0.91506 0.90031 0.92131 0.86293 0.86735 0.86751 0.86663 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.46 37.15 0.35 -2.26 16 2 C -0.11 -2.37 4.82 -26.73 -0.13 -2.50 16 3 C 0.18 3.98 1.20 -68.86 -0.08 3.89 16 4 H 0.04 0.81 5.21 -51.93 -0.27 0.54 16 5 C -0.55 -14.82 8.56 -34.44 -0.29 -15.11 16 6 H 0.07 2.08 8.02 -52.49 -0.42 1.66 16 7 C 0.08 2.14 5.36 -17.82 -0.10 2.05 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 9 Si 0.86 20.93 25.73 -169.99 -4.37 16.56 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.24 -5.52 5.37 56.52 0.30 -5.22 16 13 N -0.66 -12.46 4.98 -51.36 -0.26 -12.72 16 14 C -0.23 -3.85 4.96 60.06 0.30 -3.56 16 15 Si 1.07 14.16 11.10 -169.99 -1.89 12.28 16 16 C -0.43 -5.20 8.53 101.05 0.86 -4.34 16 17 C -0.45 -6.39 7.65 101.05 0.77 -5.62 16 18 C -0.37 -4.79 4.59 -39.59 -0.18 -4.98 16 19 C -0.09 -1.10 9.29 -39.58 -0.37 -1.46 16 20 C -0.14 -1.57 10.05 -39.59 -0.40 -1.97 16 21 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 22 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 23 C -0.09 -1.16 9.29 -39.59 -0.37 -1.53 16 24 H 0.04 0.69 7.07 -51.93 -0.37 0.33 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.04 7.61 -51.93 -0.40 0.65 16 27 H 0.05 1.14 4.83 -51.92 -0.25 0.89 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.33 6.33 8.61 -39.29 -0.34 5.99 16 31 H 0.06 1.12 7.21 -51.93 -0.37 0.74 16 32 H 0.05 0.86 7.96 -51.93 -0.41 0.45 16 33 H 0.06 0.63 7.96 -51.93 -0.41 0.22 16 34 H 0.08 1.05 7.92 -51.93 -0.41 0.63 16 35 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 36 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 37 H 0.08 1.25 6.20 -51.93 -0.32 0.93 16 38 H 0.06 0.74 7.96 -51.93 -0.41 0.33 16 39 H 0.12 1.23 7.42 -52.48 -0.39 0.84 16 40 H 0.11 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.11 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 43 H 0.12 1.48 7.66 -52.48 -0.40 1.07 16 LS Contribution 345.26 15.07 5.20 5.20 Total: -1.00 -30.30 345.26 -8.31 -38.61 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.34 Total: 7.68 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: -0.43 Total: -41.17 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.52 Total: -39.16 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: -6.26 Total: 28.83 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.30 -8.31 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559892884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.455 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds