Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47162 * 2 1 4 4 H 1.09000 * 109.47044 * 305.95531 * 3 2 1 5 5 C 1.50705 * 109.47257 * 185.95793 * 3 2 1 6 6 H 1.07993 * 119.99777 * 245.26088 * 5 3 2 7 7 C 1.37879 * 119.99648 * 65.26025 * 5 3 2 8 8 N 1.31517 * 119.99680 * 192.60898 * 7 5 3 9 9 Si 1.86796 * 120.00392 * 12.60900 * 7 5 3 10 10 H 1.48504 * 109.47088 * 94.53870 * 9 7 5 11 11 H 1.48501 * 109.47358 * 214.53843 * 9 7 5 12 12 H 1.48501 * 109.47351 * 334.53992 * 9 7 5 13 13 N 1.46895 * 109.46840 * 65.95750 * 3 2 1 14 14 C 1.46899 * 110.99852 * 200.08154 * 13 3 2 15 15 Si 1.86294 * 109.47293 * 95.86794 * 14 13 3 16 16 C 1.86300 * 109.47196 * 54.19747 * 15 14 13 17 17 C 1.86303 * 109.47036 * 294.19824 * 15 14 13 18 18 C 1.86809 * 109.47212 * 174.19871 * 15 14 13 19 19 C 1.38236 * 119.99732 * 269.72275 * 18 15 14 20 20 C 1.38235 * 119.99574 * 180.32579 * 19 18 15 21 21 C 1.38227 * 119.99968 * 359.94696 * 20 19 18 22 22 C 1.38231 * 120.00574 * 0.03346 * 21 20 19 23 23 C 1.38227 * 119.99802 * 90.00024 * 18 15 14 24 24 H 1.09000 * 109.47484 * 65.08647 * 1 2 3 25 25 H 1.09004 * 109.47215 * 185.08407 * 1 2 3 26 26 H 1.08996 * 109.47113 * 305.08680 * 1 2 3 27 27 H 1.09010 * 109.46861 * 240.00370 * 2 1 3 28 28 H 1.08999 * 109.47212 * 120.00494 * 2 1 3 29 29 H 0.96998 * 120.00418 * 180.02562 * 8 7 5 30 30 H 1.00903 * 111.00291 * 76.13043 * 13 3 2 31 31 H 1.08996 * 109.47191 * 335.86569 * 14 13 3 32 32 H 1.09001 * 109.47305 * 215.87045 * 14 13 3 33 33 H 1.09001 * 109.47338 * 179.97438 * 16 15 14 34 34 H 1.08997 * 109.47093 * 300.00398 * 16 15 14 35 35 H 1.09002 * 109.46918 * 60.00453 * 16 15 14 36 36 H 1.08991 * 109.47094 * 305.19712 * 17 15 14 37 37 H 1.08998 * 109.46718 * 65.20050 * 17 15 14 38 38 H 1.09002 * 109.46878 * 185.19727 * 17 15 14 39 39 H 1.08003 * 119.99933 * 0.28102 * 19 18 15 40 40 H 1.07998 * 119.99382 * 179.97438 * 20 19 18 41 41 H 1.08008 * 119.99875 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.00387 * 179.97438 * 22 21 20 43 43 H 1.08004 * 120.00436 * 359.72476 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5922 1.9862 -0.8319 5 6 3.5398 1.4451 -0.1475 6 1 4.1609 1.8078 0.6581 7 6 4.1188 0.9844 -1.3109 8 7 5.4126 0.7520 -1.3542 9 14 3.0659 0.6902 -2.8255 10 1 3.0992 1.8950 -3.6931 11 1 3.5949 -0.4760 -3.5774 12 1 1.6663 0.4179 -2.4102 13 7 1.6712 2.0922 1.2648 14 6 1.7033 3.5550 1.1342 15 14 -0.0112 4.1833 0.7647 16 6 -1.1939 3.5602 2.0623 17 6 -0.5490 3.5717 -0.9109 18 6 -0.0051 6.0514 0.7732 19 6 -0.2622 6.7380 1.9451 20 6 -0.2644 8.1203 1.9499 21 6 -0.0083 8.8159 0.7832 22 6 0.2493 8.1293 -0.3886 23 6 0.2509 6.7469 -0.3935 24 1 -0.3634 0.4329 -0.9320 25 1 -0.3634 -1.0237 0.0911 26 1 -0.3633 0.5907 0.8409 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 5.8201 0.4282 -2.1727 30 1 2.2679 1.7832 2.0175 31 1 2.3749 3.8326 0.3218 32 1 2.0587 3.9953 2.0658 33 1 -2.1970 3.9282 1.8464 34 1 -1.1974 2.4703 2.0573 35 1 -0.8793 3.9181 3.0426 36 1 0.1919 3.8580 -1.6571 37 1 -0.6417 2.4859 -0.8887 38 1 -1.5121 4.0134 -1.1669 39 1 -0.4622 6.1944 2.8567 40 1 -0.4657 8.6567 2.8654 41 1 -0.0095 9.8960 0.7870 42 1 0.4490 8.6728 -1.3003 43 1 0.4518 6.2105 -1.3091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559892884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = -34.247794 kcal Electronic energy + Delta-G solvation = -19581.757318 eV Core-core repulsion = 16861.693422 eV Total energy + Delta-G solvation = -2720.063895 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.156 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.58418 -38.04245 -34.30899 -33.01271 -31.69811 -31.48630 -29.20235 -28.68815 -28.17174 -25.45898 -23.72224 -23.15362 -22.84353 -21.40709 -19.09006 -17.89599 -16.89810 -16.04649 -15.79175 -15.63774 -15.47894 -14.91079 -14.64080 -14.24331 -14.18093 -13.87803 -13.72359 -13.63381 -13.40415 -13.25721 -13.13388 -12.95867 -12.80538 -12.76028 -12.54981 -12.37789 -11.96822 -11.83824 -11.53151 -11.38910 -11.08236 -10.88717 -10.66909 -10.62011 -10.57874 -9.69573 -9.67967 -8.67137 -8.32419 -6.32880 0.46326 0.62551 1.30631 1.35015 1.45899 2.00790 2.11090 2.20628 2.33372 2.85933 3.04223 3.08307 3.95961 4.18046 4.26951 4.35680 4.52987 4.64126 4.69177 4.69848 4.79598 4.82184 4.90982 4.93249 5.06425 5.09633 5.12253 5.14981 5.27456 5.31466 5.32534 5.47360 5.56489 5.59206 5.63953 5.68218 5.71489 5.74291 5.82332 5.89189 6.16050 6.27255 6.48323 6.71197 6.86384 7.35035 8.84289 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.005335 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.724938 B = 5247.384218 C = 5762.617746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.185 3.815 4 H 0.038 0.962 5 C -0.545 4.545 6 H 0.024 0.976 7 C 0.016 3.984 8 N -0.948 5.948 9 Si 0.917 3.083 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.212 1.212 13 N -0.644 5.644 14 C -0.254 4.254 15 Si 1.129 2.871 16 C -0.426 4.426 17 C -0.462 4.462 18 C -0.380 4.380 19 C -0.100 4.100 20 C -0.144 4.144 21 C -0.123 4.123 22 C -0.148 4.148 23 C -0.111 4.111 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.263 0.737 30 H 0.320 0.680 31 H 0.018 0.982 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.130 0.870 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.288 11.464 4.664 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C 0.074 3.926 4 H 0.056 0.944 5 C -0.584 4.584 6 H 0.043 0.957 7 C -0.181 4.181 8 N -0.589 5.589 9 Si 0.740 3.260 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.135 1.135 13 N -0.271 5.271 14 C -0.427 4.427 15 Si 1.314 2.686 16 C -0.537 4.537 17 C -0.568 4.568 18 C -0.422 4.422 19 C -0.118 4.118 20 C -0.162 4.162 21 C -0.141 4.141 22 C -0.166 4.166 23 C -0.129 4.129 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.148 0.852 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.772 11.417 4.437 21.584 hybrid contribution 2.162 0.058 -1.067 2.412 sum -15.610 11.474 3.370 19.664 Atomic orbital electron populations 1.21792 0.94673 1.01380 1.02158 1.21783 0.96349 0.97521 0.99703 1.19561 0.90542 0.92348 0.90115 0.94372 1.22144 0.93572 1.41661 1.01051 0.95746 1.25841 0.95785 0.94339 1.02171 1.70132 1.13137 1.47046 1.28546 0.86334 0.82690 0.77714 0.79249 1.20622 1.21383 1.13455 1.61017 1.55645 1.04268 1.06141 1.27565 1.19465 0.93108 1.02575 0.77192 0.64542 0.59513 0.67343 1.25841 1.09774 1.06894 1.11150 1.26347 1.05596 1.06889 1.18012 1.27612 1.01857 1.17838 0.94895 1.21421 0.97309 0.94646 0.98417 1.21573 1.00789 0.94907 0.98906 1.21480 0.98914 1.00768 0.92951 1.21504 1.01221 0.94762 0.99130 1.21346 0.97982 0.94820 0.98703 0.93534 0.92741 0.90422 0.94601 0.93563 0.92848 0.86493 0.96330 0.92239 0.90438 0.90409 0.90647 0.92838 0.90801 0.89989 0.84355 0.84278 0.84400 0.85215 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.46 71.98 0.68 -3.88 16 2 C -0.12 -4.72 4.82 30.59 0.15 -4.58 16 3 C 0.18 8.24 1.20 44.17 0.05 8.29 16 4 H 0.04 1.71 5.21 -2.39 -0.01 1.70 16 5 C -0.55 -30.90 8.56 25.60 0.22 -30.68 16 6 H 0.02 1.55 8.02 -2.91 -0.02 1.53 16 7 C 0.02 0.96 5.36 84.65 0.45 1.41 16 8 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 9 Si 0.92 43.64 25.73 68.60 1.77 45.40 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.21 -8.96 5.37 99.48 0.53 -8.42 16 13 N -0.64 -24.38 4.98 -316.41 -1.58 -25.96 16 14 C -0.25 -8.86 4.96 127.69 0.63 -8.22 16 15 Si 1.13 27.88 11.10 68.60 0.76 28.64 16 16 C -0.43 -8.71 8.53 113.37 0.97 -7.74 16 17 C -0.46 -12.31 7.65 113.37 0.87 -11.44 16 18 C -0.38 -9.34 4.59 22.27 0.10 -9.24 16 19 C -0.10 -2.19 9.29 22.27 0.21 -1.98 16 20 C -0.14 -2.90 10.05 22.27 0.22 -2.68 16 21 C -0.12 -2.52 10.05 22.27 0.22 -2.30 16 22 C -0.15 -3.38 10.05 22.27 0.22 -3.16 16 23 C -0.11 -2.82 9.29 22.27 0.21 -2.61 16 24 H 0.05 1.43 7.07 -2.39 -0.02 1.41 16 25 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.08 2.27 7.61 -2.39 -0.02 2.25 16 27 H 0.04 1.56 4.83 -2.38 -0.01 1.55 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 29 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 30 H 0.32 12.71 8.61 -89.69 -0.77 11.93 16 31 H 0.02 0.76 7.21 -2.39 -0.02 0.74 16 32 H 0.06 1.92 7.96 -2.39 -0.02 1.90 16 33 H 0.08 1.33 7.96 -2.39 -0.02 1.31 16 34 H 0.08 1.70 7.92 -2.39 -0.02 1.68 16 35 H 0.07 1.38 7.68 -2.39 -0.02 1.36 16 36 H 0.05 1.54 7.93 -2.39 -0.02 1.52 16 37 H 0.07 2.07 6.20 -2.39 -0.01 2.06 16 38 H 0.08 1.80 7.96 -2.39 -0.02 1.78 16 39 H 0.14 2.38 7.42 -2.91 -0.02 2.36 16 40 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 42 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.12 2.91 7.66 -2.91 -0.02 2.89 16 Total: -1.00 -68.13 345.26 6.48 -61.64 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.03 Total: 28.94 kcal Atomic # 6 Polarization: -84.01 SS G_CDS: 5.21 Total: -78.80 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -1.28 Total: -85.83 kcal Atomic # 14 Polarization: 71.52 SS G_CDS: 2.53 Total: 74.04 kcal Total: -68.13 6.48 -61.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559892884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.394 kcal (2) G-P(sol) polarization free energy of solvation -68.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds