Wall clock time and date at job start Mon Mar 30 2020 01:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00266 * 2 1 4 4 C 1.53008 * 109.46997 * 270.00270 * 3 2 1 5 5 N 1.46502 * 109.46997 * 179.97438 * 4 3 2 6 6 C 1.36935 * 119.99684 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00308 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99539 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00129 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99645 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46797 * 90.00252 * 10 8 6 12 12 H 1.48494 * 109.46952 * 210.00162 * 10 8 6 13 13 H 1.48500 * 109.46992 * 330.00191 * 10 8 6 14 14 C 1.34781 * 119.99791 * 180.02562 * 2 1 3 15 15 O 1.21696 * 120.00097 * 180.92576 * 14 2 1 16 16 C 1.46671 * 119.99992 * 0.92523 * 14 2 1 17 17 C 1.37760 * 126.22978 * 168.81112 * 16 14 2 18 18 C 1.40099 * 107.11086 * 179.97438 * 17 16 14 19 19 C 1.35580 * 108.07242 * 359.97438 * 18 17 16 20 20 N 1.36002 * 108.63697 * 359.93915 * 19 18 17 21 21 H 0.97002 * 125.62896 * 179.97438 * 20 19 18 22 22 C 1.51507 * 110.16511 * 179.97438 * 19 18 17 23 23 C 1.54401 * 105.03123 * 343.02704 * 22 19 18 24 24 C 1.51347 * 141.74155 * 179.97438 * 18 17 16 25 25 H 1.08999 * 109.47308 * 263.43888 * 1 2 3 26 26 H 1.09004 * 109.47184 * 23.43335 * 1 2 3 27 27 H 1.08999 * 109.47892 * 143.43774 * 1 2 3 28 28 H 1.08997 * 109.47265 * 29.99793 * 3 2 1 29 29 H 1.08995 * 109.47277 * 150.00525 * 3 2 1 30 30 H 1.09007 * 109.46793 * 299.99741 * 4 3 2 31 31 H 1.08998 * 109.47122 * 59.99289 * 4 3 2 32 32 H 0.97000 * 119.99665 * 0.02562 * 5 4 3 33 33 H 0.97001 * 119.99600 * 179.97438 * 9 8 6 34 34 H 1.07996 * 126.44073 * 359.94824 * 17 16 14 35 35 H 1.09005 * 110.32699 * 224.13852 * 22 19 18 36 36 H 1.08994 * 110.41686 * 101.95924 * 22 19 18 37 37 H 1.09008 * 110.92068 * 267.66578 * 23 22 19 38 38 H 1.08997 * 110.95766 * 144.03533 * 23 22 19 39 39 H 1.09000 * 110.34033 * 78.11849 * 24 18 17 40 40 H 1.09002 * 110.33886 * 315.97514 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 7 3.1845 2.9794 -1.4426 6 6 3.5272 3.5721 -2.6285 7 1 3.2574 3.1043 -3.5638 8 6 4.2203 4.7748 -2.6285 9 7 4.5486 5.3452 -1.4886 10 14 4.6871 5.5838 -4.2463 11 1 3.5978 6.4973 -4.6754 12 1 5.9415 6.3584 -4.0685 13 1 4.8931 4.5386 -5.2810 14 6 2.1388 -1.1673 -0.0005 15 8 3.3557 -1.1674 0.0165 16 6 1.4056 -2.4374 -0.0216 17 6 1.9455 -3.6857 -0.2403 18 6 0.8928 -4.6077 -0.1733 19 6 -0.2499 -3.9236 0.0805 20 7 0.0482 -2.6001 0.1771 21 1 -0.5876 -1.8892 0.3538 22 6 -1.4232 -4.8787 0.1624 23 6 -0.9257 -6.1818 -0.4997 24 6 0.6009 -6.0884 -0.2863 25 1 -0.3634 -0.1174 1.0209 26 1 -0.3634 0.9429 -0.4087 27 1 -0.3635 -0.8254 -0.6121 28 1 1.6085 2.0284 0.5138 29 1 3.1499 1.1383 0.5137 30 1 3.0416 0.9507 -1.9564 31 1 1.5001 1.8407 -1.9564 32 1 3.4271 3.3993 -0.6025 33 1 5.0333 6.1854 -1.4887 34 1 2.9848 -3.9111 -0.4286 35 1 -2.2766 -4.4778 -0.3846 36 1 -1.6928 -5.0614 1.2026 37 1 -1.1699 -6.1965 -1.5619 38 1 -1.3364 -7.0566 0.0044 39 1 0.8867 -6.6021 0.6316 40 1 1.1297 -6.5148 -1.1387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567588796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:37 Heat of formation + Delta-G solvation = 25.246997 kcal Electronic energy + Delta-G solvation = -20924.565922 eV Core-core repulsion = 17740.335124 eV Total energy + Delta-G solvation = -3184.230799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.74987 -40.61151 -37.53083 -36.99697 -36.10443 -33.48435 -32.13784 -30.51449 -28.73205 -28.33235 -27.52342 -25.83559 -23.94304 -22.63107 -21.89721 -20.63687 -20.23660 -19.28428 -18.37346 -17.35055 -17.15847 -16.70970 -16.54530 -16.27341 -15.37215 -15.32146 -15.15055 -14.68467 -14.54393 -14.44859 -14.19530 -13.89512 -13.54036 -13.20401 -13.13091 -12.91028 -12.82583 -12.67514 -12.41631 -12.28944 -12.16412 -11.94800 -11.91715 -11.69348 -11.27706 -11.01534 -10.03637 -9.74730 -9.11064 -8.92322 -8.01103 -5.32404 0.35081 1.44112 1.47292 1.55698 1.61637 1.67344 1.93689 2.26025 2.53081 3.31863 3.40444 3.65453 3.83339 3.87713 4.02504 4.06803 4.15779 4.27085 4.28940 4.38708 4.42890 4.49059 4.58872 4.62238 4.86625 4.89374 4.92997 4.98708 5.05671 5.11708 5.17751 5.27855 5.33410 5.43691 5.45976 5.74524 5.93633 6.20277 6.21651 6.48052 6.95656 7.26556 7.96855 8.23224 9.22249 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038291 B = 0.002994 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.061112 B = 9349.104401 C = 9440.190321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.608 5.608 3 C 0.123 3.877 4 C 0.149 3.851 5 N -0.742 5.742 6 C -0.254 4.254 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.967 5.967 10 Si 0.979 3.021 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.273 1.273 14 C 0.580 3.420 15 O -0.577 6.577 16 C -0.065 4.065 17 C -0.106 4.106 18 C -0.222 4.222 19 C 0.027 3.973 20 N -0.518 5.518 21 H 0.430 0.570 22 C -0.038 4.038 23 C -0.108 4.108 24 C -0.053 4.053 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.063 0.937 30 H -0.004 1.004 31 H 0.032 0.968 32 H 0.377 0.623 33 H 0.254 0.746 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.469 -23.469 5.627 31.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.340 5.340 3 C 0.000 4.000 4 C 0.021 3.979 5 N -0.386 5.386 6 C -0.385 4.385 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.807 3.193 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.198 1.198 14 C 0.371 3.629 15 O -0.456 6.456 16 C -0.176 4.176 17 C -0.133 4.133 18 C -0.228 4.228 19 C -0.092 4.092 20 N -0.122 5.122 21 H 0.279 0.721 22 C -0.076 4.076 23 C -0.146 4.146 24 C -0.091 4.091 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.014 0.986 31 H 0.050 0.950 32 H 0.209 0.791 33 H 0.063 0.937 34 H 0.148 0.852 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.947 -23.240 5.501 30.485 hybrid contribution 0.925 1.452 -0.439 1.777 sum -18.022 -21.788 5.062 28.725 Atomic orbital electron populations 1.22524 0.77450 1.05582 1.03563 1.47713 1.08353 1.04931 1.72966 1.21429 0.97611 0.84479 0.96502 1.20948 0.94421 0.86865 0.95680 1.42369 1.67663 1.22838 1.05681 1.19582 1.29399 1.02644 0.86886 0.90988 1.25645 1.01477 0.98767 1.00592 1.69816 1.45905 1.19869 1.26142 0.85066 0.77217 0.78196 0.78808 1.20614 1.21822 1.19768 1.17520 0.86392 0.83038 0.75977 1.90836 1.14882 1.87254 1.52678 1.19905 0.83635 0.93863 1.20229 1.20834 0.99181 0.90154 1.03142 1.20771 0.92744 0.97716 1.11556 1.22221 1.00384 0.83431 1.03206 1.42592 1.06663 1.07836 1.55158 0.72146 1.20928 0.92355 0.90852 1.03491 1.22380 0.93276 0.97059 1.01862 1.20607 0.97311 0.88821 1.02315 0.89120 0.88013 0.89787 0.87700 0.91893 0.98550 0.94998 0.79127 0.93684 0.85173 0.88676 0.87940 0.90281 0.87553 0.90231 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.87 8.88 127.77 1.14 2.01 16 2 N -0.61 -18.02 2.87 -851.50 -2.45 -20.47 16 3 C 0.12 4.41 5.50 86.38 0.47 4.89 16 4 C 0.15 6.59 6.58 86.38 0.57 7.16 16 5 N -0.74 -40.31 5.60 -343.43 -1.92 -42.23 16 6 C -0.25 -14.96 9.99 84.03 0.84 -14.12 16 7 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 8 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 9 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 10 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 13 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 14 C 0.58 20.35 7.64 86.44 0.66 21.01 16 15 O -0.58 -25.99 16.48 -4.33 -0.07 -26.06 16 16 C -0.06 -1.84 6.65 40.24 0.27 -1.57 16 17 C -0.11 -3.04 10.67 22.61 0.24 -2.80 16 18 C -0.22 -4.80 6.89 -19.82 -0.14 -4.93 16 19 C 0.03 0.47 8.02 41.55 0.33 0.80 16 20 N -0.52 -9.87 5.07 -170.48 -0.86 -10.73 16 21 H 0.43 5.46 4.98 -92.71 -0.46 5.00 16 22 C -0.04 -0.31 6.79 30.58 0.21 -0.10 16 23 C -0.11 -0.79 7.12 31.55 0.22 -0.57 16 24 C -0.05 -0.73 6.78 30.54 0.21 -0.52 16 25 H 0.09 1.02 7.72 -2.39 -0.02 1.00 16 26 H 0.10 1.58 8.02 -2.38 -0.02 1.57 16 27 H 0.08 1.23 5.20 -2.39 -0.01 1.22 16 28 H 0.10 3.22 8.07 -2.39 -0.02 3.20 16 29 H 0.06 2.60 7.41 -2.39 -0.02 2.58 16 30 H 0.00 -0.18 8.14 -2.38 -0.02 -0.19 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.38 21.27 7.67 -92.71 -0.71 20.56 16 33 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 35 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 36 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -80.67 329.37 2.38 -78.29 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -0.11 Total: 24.77 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 5.49 Total: 7.41 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -4.95 Total: -133.84 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.07 Total: -26.06 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -80.67 2.38 -78.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567588796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.535 kcal (2) G-P(sol) polarization free energy of solvation -80.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds