Wall clock time and date at job start Mon Mar 30 2020 01:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36942 * 120.00079 * 2 1 4 4 H 1.07997 * 119.99791 * 198.79239 * 3 2 1 5 5 C 1.38813 * 119.99895 * 18.78857 * 3 2 1 6 6 N 1.31616 * 120.00042 * 14.48416 * 5 3 2 7 7 Si 1.86799 * 119.99980 * 194.48563 * 5 3 2 8 8 H 1.48497 * 109.47183 * 94.98800 * 7 5 3 9 9 H 1.48496 * 109.47137 * 214.98608 * 7 5 3 10 10 H 1.48498 * 109.47263 * 334.99088 * 7 5 3 11 11 C 1.46495 * 119.99969 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47312 * 274.32260 * 11 2 1 13 13 H 1.09003 * 110.00027 * 55.15905 * 12 11 2 14 14 C 1.54328 * 109.88595 * 294.06638 * 12 11 2 15 15 C 1.55154 * 102.94389 * 218.39033 * 14 12 11 16 16 C 1.54684 * 101.67940 * 35.33182 * 15 14 12 17 17 N 1.47027 * 109.88786 * 176.25742 * 12 11 2 18 18 C 1.34777 * 125.64558 * 298.32637 * 17 12 11 19 19 O 1.21626 * 119.99875 * 1.71221 * 18 17 12 20 20 C 1.47260 * 120.00070 * 181.43891 * 18 17 12 21 21 C 1.46685 * 126.94534 * 171.72417 * 20 18 17 22 22 C 1.34479 * 106.33324 * 179.97438 * 21 20 18 23 23 N 1.36445 * 108.85914 * 0.02562 * 22 21 20 24 24 H 0.97006 * 124.85297 * 179.97438 * 23 22 21 25 25 C 1.34660 * 110.29798 * 359.72361 * 23 22 21 26 26 H 1.08998 * 109.47188 * 274.24688 * 1 2 3 27 27 H 1.09001 * 109.47104 * 34.24734 * 1 2 3 28 28 H 1.09003 * 109.47032 * 154.24109 * 1 2 3 29 29 H 0.97001 * 120.00091 * 180.02562 * 6 5 3 30 30 H 1.09008 * 109.47394 * 154.32338 * 11 2 1 31 31 H 1.08998 * 109.47533 * 34.32284 * 11 2 1 32 32 H 1.09000 * 110.71539 * 336.75391 * 14 12 11 33 33 H 1.08998 * 110.72365 * 100.01870 * 14 12 11 34 34 H 1.09002 * 111.00345 * 153.57833 * 15 14 12 35 35 H 1.09004 * 111.00110 * 277.38417 * 15 14 12 36 36 H 1.08996 * 110.39610 * 204.36608 * 16 15 14 37 37 H 1.09004 * 110.23568 * 82.11290 * 16 15 14 38 38 H 1.07998 * 126.83015 * 0.02623 * 21 20 18 39 39 H 1.08005 * 125.56836 * 179.97438 * 22 21 20 40 40 H 1.07995 * 125.80265 * 180.31402 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1865 1.2108 -0.3013 5 6 1.5111 2.3561 0.3872 6 7 0.3576 2.2984 1.0184 7 14 2.2889 4.0126 0.0124 8 1 1.7303 4.5461 -1.2559 9 1 1.9960 4.9586 1.1189 10 1 3.7586 3.8499 -0.1239 11 6 2.1974 -1.2687 0.0006 12 6 2.3583 -1.7641 1.4391 13 1 1.3829 -1.8335 1.9208 14 6 3.2660 -0.7975 2.2288 15 6 4.1043 -1.7550 3.1164 16 6 4.2871 -2.9716 2.1787 17 7 3.0133 -3.0804 1.4445 18 6 2.5271 -4.2020 0.8770 19 8 1.4728 -4.1693 0.2715 20 6 3.2753 -5.4658 0.9850 21 6 2.8173 -6.7989 0.5792 22 6 3.8228 -7.6462 0.8610 23 7 4.8554 -6.9398 1.4054 24 1 5.6980 -7.3236 1.6947 25 6 4.5398 -5.6327 1.4788 26 1 -0.3633 0.0761 1.0248 27 1 -0.3633 0.8495 -0.5783 28 1 -0.3633 -0.9256 -0.4466 29 1 -0.0888 3.1161 1.2886 30 1 3.1813 -1.1205 -0.4448 31 1 1.6442 -2.0080 -0.5785 32 1 3.9102 -0.2348 1.5531 33 1 2.6693 -0.1243 2.8443 34 1 5.0653 -1.3090 3.3727 35 1 3.5547 -2.0365 4.0146 36 1 4.4680 -3.8755 2.7603 37 1 5.1100 -2.7938 1.4865 38 1 1.8628 -7.0498 0.1406 39 1 3.8141 -8.7119 0.6858 40 1 5.1762 -4.8498 1.8638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570532830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:04 Heat of formation + Delta-G solvation = 30.268753 kcal Electronic energy + Delta-G solvation = -22022.697357 eV Core-core repulsion = 18838.684318 eV Total energy + Delta-G solvation = -3184.013039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.08983 -40.66992 -38.42329 -37.13211 -33.60196 -32.78121 -31.63678 -30.96132 -29.55451 -27.95663 -26.88578 -25.11920 -23.03494 -22.48750 -21.80335 -21.10397 -20.22895 -18.81405 -18.59246 -17.53651 -17.17689 -16.52351 -15.98669 -15.59849 -15.40051 -15.11715 -14.78268 -14.66465 -14.47496 -14.27406 -13.90460 -13.77600 -13.57995 -13.27455 -12.92666 -12.91126 -12.72447 -12.59973 -12.35203 -12.05835 -11.91170 -11.78388 -11.52363 -11.47083 -10.85693 -10.60851 -9.85510 -9.56034 -9.26714 -8.79052 -7.78896 -5.24416 0.83737 1.48531 1.51208 1.57753 1.59694 2.05593 2.51460 2.56045 2.60991 3.35563 3.63465 3.73023 3.84628 4.00837 4.10449 4.22107 4.32174 4.40982 4.52220 4.54047 4.58251 4.68046 4.78956 4.91778 5.00767 5.03853 5.11745 5.13150 5.16619 5.24190 5.29304 5.45964 5.54190 5.62590 5.68135 5.79137 5.98510 6.31679 6.73086 6.76939 7.14575 7.37043 7.85219 8.33859 9.26428 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032708 B = 0.004403 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.862307 B = 6357.458611 C = 6836.319950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.611 5.611 3 C -0.250 4.250 4 H 0.077 0.923 5 C -0.053 4.053 6 N -0.941 5.941 7 Si 0.969 3.031 8 H -0.293 1.293 9 H -0.295 1.295 10 H -0.262 1.262 11 C 0.153 3.847 12 C 0.127 3.873 13 H 0.025 0.975 14 C -0.099 4.099 15 C -0.124 4.124 16 C 0.086 3.914 17 N -0.610 5.610 18 C 0.585 3.415 19 O -0.604 6.604 20 C -0.265 4.265 21 C -0.190 4.190 22 C 0.004 3.996 23 N -0.533 5.533 24 H 0.440 0.560 25 C 0.056 3.944 26 H 0.002 0.998 27 H 0.027 0.973 28 H 0.007 0.993 29 H 0.247 0.753 30 H 0.051 0.949 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.208 0.792 40 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.437 -18.922 5.660 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.335 5.335 3 C -0.380 4.380 4 H 0.094 0.906 5 C -0.247 4.247 6 N -0.588 5.588 7 Si 0.798 3.202 8 H -0.220 1.220 9 H -0.222 1.222 10 H -0.186 1.186 11 C 0.026 3.974 12 C 0.021 3.979 13 H 0.043 0.957 14 C -0.138 4.138 15 C -0.162 4.162 16 C -0.035 4.035 17 N -0.343 5.343 18 C 0.378 3.622 19 O -0.487 6.487 20 C -0.275 4.275 21 C -0.214 4.214 22 C -0.124 4.124 23 N -0.129 5.129 24 H 0.281 0.719 25 C -0.081 4.081 26 H 0.020 0.980 27 H 0.046 0.954 28 H 0.026 0.974 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.092 0.908 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.145 0.855 39 H 0.225 0.775 40 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 15.899 -18.941 5.391 25.310 hybrid contribution -0.585 1.180 -0.199 1.331 sum 15.314 -17.762 5.192 24.020 Atomic orbital electron populations 1.20464 0.83166 0.95168 0.97336 1.44128 1.01856 1.01584 1.85883 1.19509 0.96312 0.85183 1.36957 0.90566 1.25700 0.98340 1.01439 0.99265 1.70288 1.18959 1.26771 1.42831 0.85212 0.78634 0.79792 0.76602 1.22041 1.22222 1.18635 1.21089 0.95510 0.86547 0.94243 1.22123 0.95077 0.82183 0.98523 0.95654 1.22301 0.97405 0.96182 0.97866 1.22830 1.01642 0.94513 0.97188 1.22967 0.85455 1.00200 0.94840 1.48586 1.23098 1.07926 1.54692 1.17806 0.84061 0.82854 0.77452 1.90720 1.26285 1.86328 1.45378 1.20389 0.97967 0.92776 1.16360 1.22064 1.00787 0.91277 1.07279 1.22208 0.87683 0.99079 1.03468 1.41681 1.16743 1.06339 1.48155 0.71928 1.22982 0.96005 0.87768 1.01370 0.98000 0.95450 0.97445 0.94408 0.93091 0.95321 0.91012 0.93067 0.86752 0.90793 0.86992 0.88999 0.85486 0.77546 0.76965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.44 9.01 127.77 1.15 11.59 16 2 N -0.61 -33.54 2.82 -726.95 -2.05 -35.59 16 3 C -0.25 -13.94 8.53 84.03 0.72 -13.22 16 4 H 0.08 4.06 7.82 -2.91 -0.02 4.03 16 5 C -0.05 -3.00 5.08 84.86 0.43 -2.57 16 6 N -0.94 -57.16 10.55 21.65 0.23 -56.93 16 7 Si 0.97 45.42 29.58 68.60 2.03 47.45 16 8 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 9 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 10 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 11 C 0.15 7.36 5.15 86.38 0.45 7.80 16 12 C 0.13 5.34 3.13 45.34 0.14 5.48 16 13 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 14 C -0.10 -3.59 5.70 31.78 0.18 -3.41 16 15 C -0.12 -2.84 7.07 31.91 0.23 -2.61 16 16 C 0.09 1.82 5.27 86.78 0.46 2.27 16 17 N -0.61 -20.77 3.07 -792.51 -2.43 -23.20 16 18 C 0.59 22.31 7.64 86.62 0.66 22.97 16 19 O -0.60 -29.52 15.89 -4.11 -0.07 -29.58 16 20 C -0.26 -7.42 6.23 -19.04 -0.12 -7.54 16 21 C -0.19 -4.80 10.98 23.62 0.26 -4.54 16 22 C 0.00 0.06 11.89 83.11 0.99 1.05 16 23 N -0.53 -5.41 5.90 -194.56 -1.15 -6.56 16 24 H 0.44 0.51 8.96 -92.70 -0.83 -0.32 16 25 C 0.06 0.91 10.24 83.92 0.86 1.77 16 26 H 0.00 0.10 7.50 -2.39 -0.02 0.09 16 27 H 0.03 1.61 7.03 -2.39 -0.02 1.59 16 28 H 0.01 0.38 7.89 -2.39 -0.02 0.36 16 29 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.05 2.32 7.88 -2.38 -0.02 2.30 16 31 H 0.03 1.49 6.48 -2.39 -0.02 1.48 16 32 H 0.07 2.70 7.29 -2.39 -0.02 2.69 16 33 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.11 1.57 5.35 -2.39 -0.01 1.56 16 37 H 0.09 1.54 8.03 -2.38 -0.02 1.52 16 38 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.21 1.24 8.06 -2.91 -0.02 1.21 16 40 H 0.21 2.00 4.76 -2.91 -0.01 1.99 16 Total: -1.00 -82.91 321.04 3.18 -79.72 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.22 Total: 5.66 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 6.40 Total: 19.04 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -5.40 Total: -122.29 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.07 Total: -29.58 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -82.91 3.18 -79.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570532830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.992 kcal (2) G-P(sol) polarization free energy of solvation -82.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds