Wall clock time and date at job start Mon Mar 30 2020 02:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40085 * 126.03839 * 2 1 4 4 C 1.30837 * 108.20955 * 180.02562 * 3 2 1 5 5 C 1.39873 * 108.19990 * 359.77798 * 4 3 2 6 6 C 1.50700 * 126.04135 * 180.23424 * 5 4 3 7 7 N 1.46897 * 109.47207 * 260.15506 * 6 5 4 8 8 C 1.34945 * 126.04021 * 180.02562 * 2 1 3 9 9 C 1.50702 * 126.12667 * 359.94569 * 8 2 1 10 10 N 1.46900 * 109.47366 * 97.52953 * 9 8 2 11 11 C 1.46899 * 110.99780 * 164.16386 * 10 9 8 12 12 C 1.50705 * 109.46654 * 190.00376 * 11 10 9 13 13 H 1.07995 * 120.00090 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99588 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00362 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99910 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46847 * 60.00124 * 16 14 12 18 18 H 1.48499 * 109.46914 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46958 * 300.00342 * 16 14 12 20 20 C 1.46895 * 110.99997 * 288.11908 * 10 9 8 21 21 C 1.53009 * 109.46987 * 293.28765 * 20 10 9 22 22 C 1.47198 * 109.46660 * 180.80344 * 21 20 10 23 23 N 5.40664 * 42.33214 * 237.98579 * 2 1 3 24 24 H 1.08998 * 109.47239 * 275.63999 * 1 2 3 25 25 H 1.09001 * 109.47003 * 35.63504 * 1 2 3 26 26 H 1.08994 * 109.46772 * 155.63561 * 1 2 3 27 27 H 1.08000 * 125.89760 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.46787 * 20.15072 * 6 5 4 29 29 H 1.09004 * 109.47311 * 140.15056 * 6 5 4 30 30 H 1.00901 * 111.00370 * 56.04277 * 7 6 5 31 31 H 1.00902 * 111.00048 * 180.02562 * 7 6 5 32 32 H 1.09007 * 109.46679 * 337.53281 * 9 8 2 33 33 H 1.08993 * 109.47257 * 217.53622 * 9 8 2 34 34 H 1.09000 * 109.47306 * 310.00192 * 11 10 9 35 35 H 1.09000 * 109.47387 * 70.00316 * 11 10 9 36 36 H 0.97004 * 120.00189 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47292 * 53.28895 * 20 10 9 38 38 H 1.09001 * 109.47349 * 173.28820 * 20 10 9 39 39 H 1.08998 * 109.47093 * 300.79917 * 21 20 10 40 40 H 1.09001 * 109.47007 * 60.80648 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7322 -0.0006 5 6 3.5437 -0.6665 0.0042 6 6 4.7680 -1.5453 0.0103 7 7 5.0312 -2.0278 -1.3519 8 6 2.2589 -1.0912 -0.0005 9 6 1.7974 -2.5258 0.0000 10 7 1.8191 -3.0477 -1.3730 11 6 1.7447 -4.5148 -1.3796 12 6 2.0150 -5.0251 -2.7717 13 1 2.2210 -4.3291 -3.5714 14 6 1.9992 -6.3804 -3.0242 15 7 1.7489 -7.2280 -2.0502 16 14 2.3336 -7.0130 -4.7498 17 1 3.6883 -6.5835 -5.1805 18 1 2.2584 -8.4961 -4.7565 19 1 1.3192 -6.4621 -5.6840 20 6 0.7375 -2.4620 -2.1760 21 6 -0.6129 -2.9426 -1.6405 22 6 -1.6959 -2.3710 -2.4572 23 7 -2.5319 -1.9302 -3.0872 24 1 -0.3633 0.1010 1.0227 25 1 -0.3633 0.8352 -0.5987 26 1 -0.3633 -0.9361 -0.4239 27 1 4.4054 1.3711 -0.0011 28 1 5.6248 -0.9721 0.3646 29 1 4.6015 -2.3959 0.6713 30 1 5.1252 -1.2574 -1.9967 31 1 5.8477 -2.6201 -1.3743 32 1 0.7823 -2.5807 0.3936 33 1 2.4623 -3.1211 0.6257 34 1 2.4887 -4.9195 -0.6935 35 1 0.7500 -4.8296 -1.0640 36 1 1.7374 -8.1815 -2.2279 37 1 0.7868 -1.3748 -2.1142 38 1 0.8475 -2.7722 -3.2151 39 1 -0.6566 -4.0306 -1.6892 40 1 -0.7290 -2.6201 -0.6058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580002060.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:50 Heat of formation + Delta-G solvation = 120.555751 kcal Electronic energy + Delta-G solvation = -22142.367423 eV Core-core repulsion = 18994.562273 eV Total energy + Delta-G solvation = -3147.805150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.15930 -37.85349 -36.00017 -34.67363 -32.98246 -32.38646 -31.24907 -29.71209 -27.34124 -26.78924 -25.32409 -23.85110 -23.21173 -20.63133 -20.28558 -18.76523 -17.61799 -16.48345 -16.08749 -16.00369 -15.25446 -14.91748 -14.73941 -14.31512 -14.09382 -13.93529 -13.74723 -13.50326 -13.03159 -12.85153 -12.51918 -12.34324 -12.23585 -11.98233 -11.82331 -11.77824 -11.46892 -11.20418 -11.09924 -10.77636 -10.60845 -10.38742 -10.20802 -9.89834 -9.31034 -9.05224 -8.44977 -8.15485 -7.96351 -7.32851 -6.05077 -4.04840 2.09613 2.68673 2.99945 3.00384 3.02865 3.34148 3.38449 3.42233 4.23503 4.42744 4.62156 4.85454 5.01447 5.13985 5.16658 5.19047 5.25057 5.32094 5.38666 5.45035 5.53732 5.61554 5.66213 5.74583 5.89617 6.03800 6.13275 6.21080 6.50260 6.59492 6.86102 7.14263 7.16476 7.24803 7.66635 7.75591 7.79084 7.91772 7.97890 8.00768 8.08535 8.45743 9.02298 9.59475 11.05396 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.014529 B = 0.006604 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.749282 B = 4238.965867 C = 5602.647444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.374 5.374 3 N -0.308 5.308 4 C 0.048 3.952 5 C -0.227 4.227 6 C 0.152 3.848 7 N -0.822 5.822 8 C 0.128 3.872 9 C 0.111 3.889 10 N -0.495 5.495 11 C 0.192 3.808 12 C -0.499 4.499 13 H 0.064 0.936 14 C 0.058 3.942 15 N -0.900 5.900 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.070 3.930 21 C -0.082 4.082 22 C 0.221 3.779 23 N -0.456 5.456 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.175 0.825 28 H 0.018 0.982 29 H 0.070 0.930 30 H 0.333 0.667 31 H 0.335 0.665 32 H 0.034 0.966 33 H 0.097 0.903 34 H 0.036 0.964 35 H -0.002 1.002 36 H 0.261 0.739 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.534 10.473 6.978 12.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.157 5.157 3 N -0.129 5.129 4 C -0.139 4.139 5 C -0.239 4.239 6 C 0.020 3.980 7 N -0.351 5.351 8 C 0.000 4.000 9 C -0.019 4.019 10 N -0.217 5.217 11 C 0.068 3.932 12 C -0.538 4.538 13 H 0.082 0.918 14 C -0.143 4.143 15 N -0.539 5.539 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.205 1.205 20 C -0.060 4.060 21 C -0.124 4.124 22 C -0.097 4.097 23 N -0.134 5.134 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.192 0.808 28 H 0.036 0.964 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.149 0.851 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.076 11.711 5.933 13.129 hybrid contribution 1.103 -0.985 -0.218 1.495 sum 1.179 10.726 5.715 12.211 Atomic orbital electron populations 1.22007 0.75179 1.04622 1.03157 1.48326 1.06021 1.03640 1.57701 1.77267 1.01631 1.08259 1.25776 1.23659 0.95055 0.94647 1.00491 1.19645 0.94269 0.92935 1.17097 1.19801 0.91523 0.95411 0.91237 1.58492 1.45887 1.24311 1.06453 1.20942 0.90643 0.90059 0.98371 1.20699 0.99101 0.88173 0.93906 1.62323 1.41549 1.10560 1.07224 1.19859 0.95863 0.78990 0.98517 1.21047 1.47100 0.91261 0.94382 0.91773 1.24912 0.95558 0.96928 0.96924 1.69923 1.49959 1.02470 1.31595 0.86632 0.78975 0.77422 0.84811 1.20157 1.21555 1.20463 1.22136 0.85139 0.97957 1.00786 1.20414 0.90899 1.04361 0.96681 1.29254 0.93786 0.92873 0.93779 1.81150 1.11615 1.10511 1.10091 0.90981 0.89735 0.89197 0.80845 0.96395 0.91123 0.85469 0.85262 0.94834 0.88513 0.94612 0.98481 0.92928 0.92441 0.88801 0.85111 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 10.52 59.85 0.63 1.65 16 2 N -0.37 -5.31 3.79 -63.89 -0.24 -5.55 16 3 N -0.31 -4.68 12.58 30.63 0.39 -4.30 16 4 C 0.05 0.65 11.96 -17.36 -0.21 0.44 16 5 C -0.23 -3.22 5.61 -105.05 -0.59 -3.81 16 6 C 0.15 1.95 6.97 -4.98 -0.03 1.92 16 7 N -0.82 -11.37 9.61 -11.41 -0.11 -11.48 16 8 C 0.13 1.88 5.61 -82.26 -0.46 1.42 16 9 C 0.11 1.65 4.73 -4.97 -0.02 1.63 16 10 N -0.49 -8.70 4.65 -237.51 -1.10 -9.81 16 11 C 0.19 4.16 4.42 -4.97 -0.02 4.14 16 12 C -0.50 -12.46 8.55 -34.44 -0.29 -12.75 16 13 H 0.06 1.63 7.10 -52.49 -0.37 1.26 16 14 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 15 N -0.90 -24.61 13.29 55.43 0.74 -23.88 16 16 Si 0.89 20.70 29.54 -169.99 -5.02 15.67 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.07 1.14 4.55 -3.82 -0.02 1.13 16 21 C -0.08 -1.16 4.21 -29.51 -0.12 -1.28 16 22 C 0.22 3.40 15.40 -20.77 -0.32 3.08 16 23 N -0.46 -7.96 18.54 42.15 0.78 -7.17 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.09 0.96 3.22 -51.93 -0.17 0.80 16 27 H 0.17 1.81 8.06 -52.49 -0.42 1.38 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 30 H 0.33 4.37 8.99 -39.29 -0.35 4.02 16 31 H 0.33 4.16 9.08 -39.29 -0.36 3.80 16 32 H 0.03 0.44 5.39 -51.92 -0.28 0.16 16 33 H 0.10 1.47 7.28 -51.93 -0.38 1.09 16 34 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 35 H 0.00 -0.05 5.91 -51.93 -0.31 -0.36 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.06 0.90 5.93 -51.93 -0.31 0.59 16 38 H 0.09 1.74 6.94 -51.93 -0.36 1.38 16 39 H 0.13 2.10 6.19 -51.93 -0.32 1.78 16 40 H 0.10 1.09 4.74 -51.93 -0.25 0.84 16 LS Contribution 328.34 15.07 4.95 4.95 Total: -1.00 -29.85 328.34 -6.27 -36.12 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.08 Total: 6.46 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.56 Total: -1.02 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 0.45 Total: -62.18 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.85 -6.27 -36.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580002060.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.674 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds