Wall clock time and date at job start Mon Mar 30 2020 02:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47215 * 2 1 4 4 C 1.46901 * 111.00099 * 75.82738 * 3 2 1 5 5 Si 1.86298 * 109.47372 * 209.71570 * 4 3 2 6 6 C 1.86305 * 109.47011 * 54.27153 * 5 4 3 7 7 C 1.86296 * 109.47071 * 294.27144 * 5 4 3 8 8 C 1.86800 * 109.47396 * 174.26738 * 5 4 3 9 9 C 1.38240 * 119.99585 * 89.99853 * 8 5 4 10 10 C 1.38233 * 119.99904 * 179.97438 * 9 8 5 11 11 C 1.38237 * 119.99674 * 359.97438 * 10 9 8 12 12 C 1.38236 * 120.00274 * 0.27696 * 11 10 9 13 13 C 1.38229 * 119.99675 * 359.50979 * 12 11 10 14 14 C 1.46899 * 111.00078 * 199.78156 * 3 2 1 15 15 C 1.53003 * 109.47205 * 308.29080 * 14 3 2 16 16 C 1.50696 * 109.47222 * 68.29577 * 14 3 2 17 17 N 1.27940 * 120.00158 * 5.33123 * 16 14 3 18 18 Si 1.86806 * 120.00079 * 185.32851 * 16 14 3 19 19 H 1.48497 * 109.46943 * 94.96949 * 18 16 14 20 20 H 1.48498 * 109.47264 * 214.96974 * 18 16 14 21 21 H 1.48500 * 109.47068 * 334.96954 * 18 16 14 22 22 H 1.08996 * 109.46896 * 184.84517 * 1 2 3 23 23 H 1.09000 * 109.47038 * 304.84353 * 1 2 3 24 24 H 1.09003 * 109.46921 * 64.84755 * 1 2 3 25 25 H 1.09006 * 109.47304 * 240.00070 * 2 1 3 26 26 H 1.08997 * 109.47217 * 120.00116 * 2 1 3 27 27 H 1.08996 * 109.47259 * 89.71405 * 4 3 2 28 28 H 1.09003 * 109.47107 * 329.71751 * 4 3 2 29 29 H 1.08996 * 109.47176 * 184.90997 * 6 5 4 30 30 H 1.09002 * 109.46916 * 304.90518 * 6 5 4 31 31 H 1.08999 * 109.47447 * 64.90351 * 6 5 4 32 32 H 1.08998 * 109.47079 * 299.99486 * 7 5 4 33 33 H 1.09000 * 109.47539 * 60.00132 * 7 5 4 34 34 H 1.09004 * 109.46958 * 179.97438 * 7 5 4 35 35 H 1.07997 * 120.00215 * 359.97438 * 9 8 5 36 36 H 1.07995 * 120.00013 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.99836 * 180.02562 * 11 10 9 38 38 H 1.07997 * 119.99725 * 179.72734 * 12 11 10 39 39 H 1.08006 * 119.99744 * 180.27282 * 13 12 11 40 40 H 1.09007 * 109.47140 * 188.29696 * 14 3 2 41 41 H 1.09002 * 109.47031 * 179.97438 * 15 14 3 42 42 H 1.09000 * 109.47389 * 300.00478 * 15 14 3 43 43 H 1.09007 * 109.46568 * 60.00266 * 15 14 3 44 44 H 0.97005 * 119.99993 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8786 1.9933 1.3297 5 14 1.6240 3.8299 1.1486 6 6 0.1836 4.1479 0.0107 7 6 3.1616 4.6025 0.4350 8 6 1.2711 4.5777 2.8236 9 6 2.3125 5.0333 3.6104 10 6 2.0513 5.5873 4.8496 11 6 0.7488 5.6861 5.3019 12 6 -0.2922 5.2258 4.5173 13 6 -0.0313 4.6759 3.2762 14 6 3.4119 1.4511 -0.4641 15 6 4.2625 0.4591 0.3317 16 6 3.4703 1.1011 -1.9287 17 7 2.3885 0.9085 -2.5841 18 14 5.1222 0.9486 -2.7875 19 1 5.5476 -0.4741 -2.7932 20 1 5.0002 1.4345 -4.1854 21 1 6.1321 1.7643 -2.0663 22 1 -0.3633 -1.0240 0.0868 23 1 -0.3633 0.5871 0.8434 24 1 -0.3633 0.4368 -0.9303 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.7810 1.8072 1.9120 28 1 1.0204 1.5560 1.8401 29 1 0.0888 5.2195 -0.1646 30 1 0.3507 3.6380 -0.9381 31 1 -0.7313 3.7723 0.4688 32 1 4.0043 4.4165 1.1008 33 1 3.3676 4.1662 -0.5424 34 1 3.0125 5.6771 0.3286 35 1 3.3300 4.9565 3.2568 36 1 2.8648 5.9436 5.4641 37 1 0.5447 6.1193 6.2699 38 1 -1.3094 5.2990 4.8726 39 1 -0.8450 4.3202 2.6614 40 1 3.7967 2.4602 -0.3160 41 1 5.2954 0.5079 -0.0130 42 1 4.2202 0.7123 1.3910 43 1 3.8777 -0.5499 0.1836 44 1 2.4261 0.6829 -3.5268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643953131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:40 Heat of formation + Delta-G solvation = 21.634088 kcal Electronic energy + Delta-G solvation = -20308.949912 eV Core-core repulsion = 17577.653497 eV Total energy + Delta-G solvation = -2731.296414 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.164 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78138 -39.57359 -35.67141 -32.70305 -31.70411 -31.50363 -30.27086 -29.02714 -28.28004 -26.50994 -24.96420 -23.16134 -22.92749 -22.21769 -19.82364 -18.01213 -17.80570 -16.52726 -16.14112 -15.87030 -15.64929 -15.52559 -14.99587 -14.48937 -14.23562 -14.22374 -14.14275 -13.93895 -13.77753 -13.47214 -13.38625 -13.17753 -13.13379 -12.95269 -12.85469 -12.65394 -12.61971 -12.42492 -12.17324 -12.00340 -11.86839 -11.56732 -11.14138 -10.92840 -10.78460 -10.66389 -9.69588 -9.67741 -9.62752 -8.81385 0.46085 0.64546 0.88582 1.05544 1.36964 1.71978 1.79707 1.86034 1.97215 2.01568 2.68523 3.08625 3.29543 3.56754 4.14341 4.15294 4.17550 4.24309 4.31464 4.36284 4.56157 4.60112 4.65521 4.70494 4.72751 4.74746 4.79919 4.81340 4.86785 4.97129 5.00810 5.05138 5.10952 5.14311 5.20776 5.25604 5.26974 5.39416 5.55528 5.59979 5.65765 5.70017 5.75130 5.81848 6.25769 6.26742 6.30866 7.04354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 N -0.487 5.487 4 C -0.248 4.248 5 Si 1.087 2.913 6 C -0.437 4.437 7 C -0.453 4.453 8 C -0.376 4.376 9 C -0.090 4.090 10 C -0.134 4.134 11 C -0.111 4.111 12 C -0.133 4.133 13 C -0.088 4.088 14 C 0.094 3.906 15 C -0.189 4.189 16 C -0.007 4.007 17 N -0.595 5.595 18 Si 0.919 3.081 19 H -0.240 1.240 20 H -0.247 1.247 21 H -0.232 1.232 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.987 -0.363 0.143 2.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 N -0.210 5.210 4 C -0.423 4.423 5 Si 1.275 2.725 6 C -0.546 4.546 7 C -0.561 4.561 8 C -0.418 4.418 9 C -0.108 4.108 10 C -0.152 4.152 11 C -0.129 4.129 12 C -0.152 4.152 13 C -0.106 4.106 14 C -0.015 4.015 15 C -0.249 4.249 16 C -0.257 4.257 17 N -0.207 5.207 18 Si 0.735 3.265 19 H -0.163 1.163 20 H -0.170 1.170 21 H -0.154 1.154 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.451 -0.157 -0.297 1.489 hybrid contribution 0.810 -0.555 0.416 1.066 sum 2.260 -0.712 0.119 2.373 Atomic orbital electron populations 1.21719 0.95166 1.00653 1.02542 1.22129 0.96048 0.89195 1.00071 1.62309 1.17189 1.18204 1.23309 1.27358 1.03990 1.18637 0.92271 0.77791 0.67788 0.64379 0.62532 1.25992 1.13139 1.04149 1.11313 1.26285 1.15182 1.07642 1.06958 1.27472 0.95109 1.04908 1.14311 1.21090 0.98956 0.96758 0.93968 1.21265 0.96742 1.00384 0.96805 1.21218 0.93129 0.99030 0.99567 1.21277 0.99016 0.99591 0.95271 1.21107 0.96822 0.97263 0.95392 1.21253 0.89492 1.00514 0.90287 1.22441 1.00452 1.00595 1.01371 1.30255 1.02115 0.94261 0.99078 1.68268 1.32490 1.07010 1.12968 0.85877 0.77254 0.82890 0.80469 1.16346 1.16988 1.15426 0.93208 0.93031 0.91575 0.90629 0.95540 0.93121 0.89857 0.91912 0.89789 0.91664 0.91277 0.90424 0.90920 0.86338 0.86434 0.86376 0.86400 0.86223 0.87024 0.91754 0.91054 0.91616 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.11 10.06 37.16 0.37 0.26 16 2 C 0.05 0.04 3.78 -3.82 -0.01 0.02 16 3 N -0.49 -0.01 3.36 -162.92 -0.55 -0.56 16 4 C -0.25 0.20 3.98 60.07 0.24 0.44 16 5 Si 1.09 -1.58 10.91 -169.99 -1.85 -3.43 16 6 C -0.44 0.03 8.57 101.05 0.87 0.90 16 7 C -0.45 0.69 7.57 101.05 0.77 1.46 16 8 C -0.38 -0.20 4.59 -39.58 -0.18 -0.38 16 9 C -0.09 -0.07 9.29 -39.58 -0.37 -0.44 16 10 C -0.13 -0.18 10.05 -39.58 -0.40 -0.58 16 11 C -0.11 -0.17 10.05 -39.58 -0.40 -0.57 16 12 C -0.13 -0.20 10.05 -39.59 -0.40 -0.60 16 13 C -0.09 -0.10 9.29 -39.59 -0.37 -0.47 16 14 C 0.09 -0.07 2.21 -68.87 -0.15 -0.22 16 15 C -0.19 0.29 8.06 37.16 0.30 0.59 16 16 C -0.01 0.00 4.72 -13.90 -0.07 -0.06 16 17 N -0.60 -0.30 11.56 56.23 0.65 0.35 16 18 Si 0.92 -1.12 27.78 -169.99 -4.72 -5.84 16 19 H -0.24 0.10 7.11 56.52 0.40 0.51 16 20 H -0.25 0.07 7.11 56.52 0.40 0.47 16 21 H -0.23 0.29 7.11 56.52 0.40 0.69 16 22 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 23 H 0.05 0.03 6.76 -51.93 -0.35 -0.32 16 24 H 0.07 0.12 8.14 -51.93 -0.42 -0.31 16 25 H 0.08 0.09 6.06 -51.93 -0.31 -0.22 16 26 H 0.03 0.02 7.33 -51.93 -0.38 -0.36 16 27 H 0.05 -0.07 6.04 -51.93 -0.31 -0.38 16 28 H 0.08 -0.04 6.27 -51.93 -0.33 -0.36 16 29 H 0.06 0.00 7.96 -51.93 -0.41 -0.41 16 30 H 0.08 0.08 7.96 -51.93 -0.41 -0.33 16 31 H 0.06 -0.01 7.47 -51.93 -0.39 -0.40 16 32 H 0.07 -0.16 7.69 -51.93 -0.40 -0.56 16 33 H 0.08 -0.12 6.39 -51.93 -0.33 -0.46 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 35 H 0.12 -0.14 7.43 -52.49 -0.39 -0.53 16 36 H 0.12 -0.03 8.06 -52.49 -0.42 -0.46 16 37 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 38 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 39 H 0.12 -0.06 7.26 -52.48 -0.38 -0.44 16 40 H 0.11 -0.21 4.62 -51.93 -0.24 -0.45 16 41 H 0.06 -0.16 6.64 -51.93 -0.34 -0.51 16 42 H 0.07 -0.13 6.57 -51.93 -0.34 -0.47 16 43 H 0.06 -0.07 6.69 -51.93 -0.35 -0.42 16 44 H 0.33 -0.29 8.23 -40.82 -0.34 -0.63 16 LS Contribution 343.01 15.07 5.17 5.17 Total: 0.00 -3.64 343.01 -8.44 -12.08 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -7.34 Total: -8.11 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 0.20 Total: 0.34 kcal Atomic # 7 Polarization: -0.32 SS G_CDS: 0.10 Total: -0.22 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: -6.58 Total: -9.27 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -3.64 -8.44 -12.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643953131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.714 kcal (2) G-P(sol) polarization free energy of solvation -3.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds