Wall clock time and date at job start Mon Mar 30 2020 02:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47215 * 2 1 4 4 C 1.46901 * 111.00099 * 75.82738 * 3 2 1 5 5 Si 1.86298 * 109.47372 * 209.71570 * 4 3 2 6 6 C 1.86305 * 109.47011 * 54.27153 * 5 4 3 7 7 C 1.86296 * 109.47071 * 294.27144 * 5 4 3 8 8 C 1.86800 * 109.47396 * 174.26738 * 5 4 3 9 9 C 1.38240 * 119.99585 * 89.99853 * 8 5 4 10 10 C 1.38233 * 119.99904 * 179.97438 * 9 8 5 11 11 C 1.38237 * 119.99674 * 359.97438 * 10 9 8 12 12 C 1.38236 * 120.00274 * 0.27696 * 11 10 9 13 13 C 1.38229 * 119.99675 * 359.50979 * 12 11 10 14 14 C 1.46899 * 111.00078 * 199.78156 * 3 2 1 15 15 C 1.53003 * 109.47205 * 308.29080 * 14 3 2 16 16 C 1.50696 * 109.47222 * 68.29577 * 14 3 2 17 17 N 1.27940 * 120.00158 * 5.33123 * 16 14 3 18 18 Si 1.86806 * 120.00079 * 185.32851 * 16 14 3 19 19 H 1.48497 * 109.46943 * 94.96949 * 18 16 14 20 20 H 1.48498 * 109.47264 * 214.96974 * 18 16 14 21 21 H 1.48500 * 109.47068 * 334.96954 * 18 16 14 22 22 H 1.08996 * 109.46896 * 184.84517 * 1 2 3 23 23 H 1.09000 * 109.47038 * 304.84353 * 1 2 3 24 24 H 1.09003 * 109.46921 * 64.84755 * 1 2 3 25 25 H 1.09006 * 109.47304 * 240.00070 * 2 1 3 26 26 H 1.08997 * 109.47217 * 120.00116 * 2 1 3 27 27 H 1.08996 * 109.47259 * 89.71405 * 4 3 2 28 28 H 1.09003 * 109.47107 * 329.71751 * 4 3 2 29 29 H 1.08996 * 109.47176 * 184.90997 * 6 5 4 30 30 H 1.09002 * 109.46916 * 304.90518 * 6 5 4 31 31 H 1.08999 * 109.47447 * 64.90351 * 6 5 4 32 32 H 1.08998 * 109.47079 * 299.99486 * 7 5 4 33 33 H 1.09000 * 109.47539 * 60.00132 * 7 5 4 34 34 H 1.09004 * 109.46958 * 179.97438 * 7 5 4 35 35 H 1.07997 * 120.00215 * 359.97438 * 9 8 5 36 36 H 1.07995 * 120.00013 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.99836 * 180.02562 * 11 10 9 38 38 H 1.07997 * 119.99725 * 179.72734 * 12 11 10 39 39 H 1.08006 * 119.99744 * 180.27282 * 13 12 11 40 40 H 1.09007 * 109.47140 * 188.29696 * 14 3 2 41 41 H 1.09002 * 109.47031 * 179.97438 * 15 14 3 42 42 H 1.09000 * 109.47389 * 300.00478 * 15 14 3 43 43 H 1.09007 * 109.46568 * 60.00266 * 15 14 3 44 44 H 0.97005 * 119.99993 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8786 1.9933 1.3297 5 14 1.6240 3.8299 1.1486 6 6 0.1836 4.1479 0.0107 7 6 3.1616 4.6025 0.4350 8 6 1.2711 4.5777 2.8236 9 6 2.3125 5.0333 3.6104 10 6 2.0513 5.5873 4.8496 11 6 0.7488 5.6861 5.3019 12 6 -0.2922 5.2258 4.5173 13 6 -0.0313 4.6759 3.2762 14 6 3.4119 1.4511 -0.4641 15 6 4.2625 0.4591 0.3317 16 6 3.4703 1.1011 -1.9287 17 7 2.3885 0.9085 -2.5841 18 14 5.1222 0.9486 -2.7875 19 1 5.5476 -0.4741 -2.7932 20 1 5.0002 1.4345 -4.1854 21 1 6.1321 1.7643 -2.0663 22 1 -0.3633 -1.0240 0.0868 23 1 -0.3633 0.5871 0.8434 24 1 -0.3633 0.4368 -0.9303 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.7810 1.8072 1.9120 28 1 1.0204 1.5560 1.8401 29 1 0.0888 5.2195 -0.1646 30 1 0.3507 3.6380 -0.9381 31 1 -0.7313 3.7723 0.4688 32 1 4.0043 4.4165 1.1008 33 1 3.3676 4.1662 -0.5424 34 1 3.0125 5.6771 0.3286 35 1 3.3300 4.9565 3.2568 36 1 2.8648 5.9436 5.4641 37 1 0.5447 6.1193 6.2699 38 1 -1.3094 5.2990 4.8726 39 1 -0.8450 4.3202 2.6614 40 1 3.7967 2.4602 -0.3160 41 1 5.2954 0.5079 -0.0130 42 1 4.2202 0.7123 1.3910 43 1 3.8777 -0.5499 0.1836 44 1 2.4261 0.6829 -3.5268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643953133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:45 Heat of formation + Delta-G solvation = 33.689807 kcal Electronic energy + Delta-G solvation = -20308.427136 eV Core-core repulsion = 17577.653497 eV Total energy + Delta-G solvation = -2730.773639 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.73733 -39.57687 -35.64238 -32.67794 -31.72352 -31.52059 -30.22880 -28.93447 -28.22648 -26.43310 -24.93234 -23.18776 -22.95283 -22.21339 -19.77339 -17.99927 -17.77998 -16.48319 -16.09629 -15.84440 -15.64071 -15.56276 -14.93777 -14.44631 -14.22145 -14.20842 -14.07842 -13.87819 -13.68033 -13.47759 -13.31286 -13.09580 -13.09211 -12.92356 -12.83620 -12.60770 -12.57517 -12.40824 -12.09471 -11.98091 -11.86639 -11.55933 -11.09842 -10.89093 -10.71802 -10.63824 -9.72716 -9.70013 -9.59683 -8.76502 0.43049 0.59557 0.95671 1.14407 1.47165 1.81053 1.87047 1.93566 2.05070 2.12335 2.74990 3.04872 3.34847 3.66388 4.14989 4.23643 4.24493 4.29420 4.32575 4.34386 4.65125 4.65188 4.66156 4.73915 4.76351 4.80597 4.84889 4.93028 4.94387 4.96861 5.04549 5.07483 5.12099 5.16862 5.22773 5.24557 5.31388 5.42761 5.50986 5.61508 5.65186 5.70312 5.73756 5.81058 6.24546 6.32280 6.32588 7.13018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.055 3.945 3 N -0.493 5.493 4 C -0.255 4.255 5 Si 1.140 2.860 6 C -0.451 4.451 7 C -0.460 4.460 8 C -0.385 4.385 9 C -0.101 4.101 10 C -0.149 4.149 11 C -0.128 4.128 12 C -0.151 4.151 13 C -0.104 4.104 14 C 0.084 3.916 15 C -0.190 4.190 16 C -0.007 4.007 17 N -0.618 5.618 18 Si 0.952 3.048 19 H -0.252 1.252 20 H -0.262 1.262 21 H -0.224 1.224 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.135 -0.191 0.352 3.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 N -0.217 5.217 4 C -0.429 4.429 5 Si 1.325 2.675 6 C -0.558 4.558 7 C -0.568 4.568 8 C -0.425 4.425 9 C -0.118 4.118 10 C -0.167 4.167 11 C -0.146 4.146 12 C -0.169 4.169 13 C -0.122 4.122 14 C -0.025 4.025 15 C -0.249 4.249 16 C -0.257 4.257 17 N -0.231 5.231 18 Si 0.769 3.231 19 H -0.176 1.176 20 H -0.186 1.186 21 H -0.146 1.146 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.577 0.022 -0.074 2.578 hybrid contribution 0.411 -0.612 0.347 0.815 sum 2.988 -0.590 0.273 3.058 Atomic orbital electron populations 1.21692 0.95513 1.00694 1.01949 1.22070 0.95757 0.89719 0.99689 1.62289 1.17903 1.17687 1.23794 1.27470 1.04285 1.19094 0.92045 0.76980 0.66774 0.63299 0.60497 1.26186 1.14346 1.03838 1.11392 1.26324 1.15460 1.07568 1.07417 1.27907 0.94849 1.04561 1.15225 1.21432 1.00106 0.96435 0.93861 1.21559 0.97088 1.00587 0.97445 1.21464 0.93478 0.99474 1.00226 1.21527 0.99661 0.99976 0.95719 1.21380 0.97684 0.97550 0.95604 1.21447 0.89263 1.01550 0.90206 1.22450 1.00949 0.99928 1.01592 1.30491 1.02440 0.93423 0.99297 1.68284 1.33304 1.08000 1.13504 0.85394 0.76452 0.81975 0.79292 1.17563 1.18617 1.14599 0.93007 0.92838 0.92734 0.91325 0.95539 0.92187 0.90326 0.92136 0.90869 0.91886 0.89890 0.90131 0.91003 0.84272 0.85173 0.85424 0.85554 0.85258 0.85653 0.90521 0.90526 0.92316 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.33 10.06 71.98 0.72 0.39 16 2 C 0.06 0.10 3.78 86.30 0.33 0.42 16 3 N -0.49 0.02 3.36 -669.36 -2.25 -2.23 16 4 C -0.26 0.53 3.98 127.69 0.51 1.04 16 5 Si 1.14 -3.84 10.91 68.60 0.75 -3.09 16 6 C -0.45 -0.18 8.57 113.37 0.97 0.79 16 7 C -0.46 2.05 7.57 113.37 0.86 2.91 16 8 C -0.39 -0.31 4.59 22.27 0.10 -0.21 16 9 C -0.10 -0.10 9.29 22.27 0.21 0.10 16 10 C -0.15 -0.38 10.05 22.27 0.22 -0.16 16 11 C -0.13 -0.45 10.05 22.27 0.22 -0.23 16 12 C -0.15 -0.56 10.05 22.27 0.22 -0.34 16 13 C -0.10 -0.28 9.29 22.27 0.21 -0.08 16 14 C 0.08 -0.18 2.21 44.17 0.10 -0.08 16 15 C -0.19 0.76 8.06 71.98 0.58 1.34 16 16 C -0.01 0.01 4.72 88.67 0.42 0.43 16 17 N -0.62 -0.95 11.56 24.11 0.28 -0.67 16 18 Si 0.95 -2.80 27.78 68.60 1.91 -0.89 16 19 H -0.25 0.28 7.11 99.48 0.71 0.99 16 20 H -0.26 0.13 7.11 99.48 0.71 0.84 16 21 H -0.22 0.94 7.11 99.48 0.71 1.64 16 22 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 23 H 0.05 0.10 6.76 -2.39 -0.02 0.08 16 24 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 25 H 0.07 0.22 6.06 -2.38 -0.01 0.20 16 26 H 0.03 0.04 7.33 -2.39 -0.02 0.02 16 27 H 0.06 -0.23 6.04 -2.39 -0.01 -0.25 16 28 H 0.08 -0.08 6.27 -2.39 -0.01 -0.09 16 29 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 30 H 0.07 0.20 7.96 -2.39 -0.02 0.18 16 31 H 0.06 0.03 7.47 -2.39 -0.02 0.02 16 32 H 0.08 -0.58 7.69 -2.39 -0.02 -0.59 16 33 H 0.08 -0.37 6.39 -2.39 -0.02 -0.39 16 34 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 35 H 0.14 -0.55 7.43 -2.91 -0.02 -0.58 16 36 H 0.13 -0.13 8.06 -2.91 -0.02 -0.15 16 37 H 0.13 0.05 8.06 -2.91 -0.02 0.02 16 38 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 39 H 0.13 -0.05 7.26 -2.91 -0.02 -0.07 16 40 H 0.13 -0.65 4.62 -2.38 -0.01 -0.66 16 41 H 0.08 -0.50 6.64 -2.39 -0.02 -0.52 16 42 H 0.08 -0.38 6.57 -2.39 -0.02 -0.39 16 43 H 0.06 -0.14 6.69 -2.38 -0.02 -0.15 16 44 H 0.33 -0.33 8.23 -92.70 -0.76 -1.09 16 Total: 0.00 -8.71 343.01 7.32 -1.39 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: 0.96 Total: -0.84 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 5.67 Total: 6.33 kcal Atomic # 7 Polarization: -0.93 SS G_CDS: -1.97 Total: -2.90 kcal Atomic # 14 Polarization: -6.64 SS G_CDS: 2.65 Total: -3.98 kcal Total: -8.71 7.32 -1.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643953133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.081 kcal (2) G-P(sol) polarization free energy of solvation -8.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -1.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds