Wall clock time and date at job start Mon Mar 30 2020 01:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 120.00238 * 2 1 4 4 H 1.08000 * 119.99794 * 202.34739 * 3 2 1 5 5 C 1.38812 * 119.99970 * 22.34627 * 3 2 1 6 6 N 1.31611 * 119.99861 * 11.34576 * 5 3 2 7 7 Si 1.86796 * 119.99906 * 191.34345 * 5 3 2 8 8 H 1.48509 * 109.47126 * 90.00282 * 7 5 3 9 9 H 1.48494 * 109.47211 * 210.00159 * 7 5 3 10 10 H 1.48504 * 109.47578 * 330.00278 * 7 5 3 11 11 C 1.46508 * 119.99725 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46580 * 269.99963 * 11 2 1 13 13 N 1.46498 * 109.46690 * 179.97438 * 12 11 2 14 14 C 1.34776 * 119.99827 * 179.97438 * 13 12 11 15 15 O 1.21695 * 119.99997 * 0.02562 * 14 13 12 16 16 C 1.46687 * 119.99796 * 179.97438 * 14 13 12 17 17 C 1.37759 * 126.22272 * 180.02562 * 16 14 13 18 18 C 1.40106 * 107.10693 * 179.97438 * 17 16 14 19 19 C 1.35582 * 108.06912 * 0.02562 * 18 17 16 20 20 N 1.36002 * 108.63911 * 359.92909 * 19 18 17 21 21 H 0.97007 * 125.62984 * 179.97438 * 20 19 18 22 22 C 1.51501 * 110.16260 * 179.97438 * 19 18 17 23 23 C 1.54407 * 105.03133 * 343.02613 * 22 19 18 24 24 C 1.51345 * 141.74122 * 179.97438 * 18 17 16 25 25 H 1.09001 * 109.46898 * 274.21379 * 1 2 3 26 26 H 1.08998 * 109.47098 * 34.20664 * 1 2 3 27 27 H 1.09000 * 109.47039 * 154.20689 * 1 2 3 28 28 H 0.97006 * 119.99930 * 180.02562 * 6 5 3 29 29 H 1.08994 * 109.47066 * 149.99840 * 11 2 1 30 30 H 1.08998 * 109.46997 * 29.99286 * 11 2 1 31 31 H 1.08994 * 109.47521 * 60.00156 * 12 11 2 32 32 H 1.08998 * 109.46903 * 299.99381 * 12 11 2 33 33 H 0.96998 * 120.00299 * 0.02562 * 13 12 11 34 34 H 1.08005 * 126.44682 * 359.96301 * 17 16 14 35 35 H 1.08997 * 110.32973 * 224.13242 * 22 19 18 36 36 H 1.09000 * 110.41562 * 101.95834 * 22 19 18 37 37 H 1.09004 * 110.91853 * 267.65821 * 23 22 19 38 38 H 1.08994 * 110.95063 * 144.03760 * 23 22 19 39 39 H 1.08997 * 110.33963 * 78.12366 * 24 18 17 40 40 H 1.08999 * 110.33600 * 315.97932 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1689 1.2209 -0.3556 5 6 1.5339 2.3429 0.4571 6 7 0.3843 2.2690 1.0936 7 14 2.3369 4.0046 0.1688 8 1 1.8681 4.5632 -1.1250 9 1 1.9684 4.9301 1.2700 10 1 3.8125 3.8418 0.1319 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7110 1.4418 13 7 3.1843 -2.9801 1.4413 14 6 3.5216 -3.5640 2.6082 15 8 3.2177 -3.0372 3.6624 16 6 4.2539 -4.8350 2.6077 17 6 4.6607 -5.5406 3.7187 18 6 5.3210 -6.6878 3.2594 19 6 5.3084 -6.6659 1.9038 20 7 4.6602 -5.5429 1.4933 21 1 4.5102 -5.2823 0.5710 22 6 6.0133 -7.8895 1.3552 23 6 6.8347 -8.4431 2.5397 24 6 6.0350 -7.9267 3.7552 25 1 -0.3633 0.0755 1.0249 26 1 -0.3633 0.8499 -0.5777 27 1 -0.3633 -0.9253 -0.4472 28 1 -0.0462 3.0776 1.4126 29 1 3.1499 -1.1383 -0.5143 30 1 1.6083 -2.0282 -0.5146 31 1 1.5001 -1.8416 1.9556 32 1 3.0416 -0.9517 1.9559 33 1 3.4269 -3.3998 0.6011 34 1 4.5009 -5.2618 4.7499 35 1 6.6736 -7.6099 0.5343 36 1 5.2861 -8.6291 1.0202 37 1 7.8453 -8.0345 2.5372 38 1 6.8575 -9.5327 2.5227 39 1 5.3128 -8.6762 4.0789 40 1 6.7095 -7.6734 4.5731 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663313433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:47 Heat of formation + Delta-G solvation = 33.968237 kcal Electronic energy + Delta-G solvation = -20682.649018 eV Core-core repulsion = 17498.796401 eV Total energy + Delta-G solvation = -3183.852617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65537 -39.02848 -36.19649 -36.00234 -34.18831 -31.39787 -31.11579 -28.96730 -27.53864 -27.25908 -25.88524 -23.82540 -22.20227 -21.22859 -20.69110 -19.84830 -19.12666 -18.10370 -16.77111 -16.01107 -15.68476 -15.52722 -15.09994 -14.73122 -14.01171 -13.78039 -13.59472 -13.44517 -13.32751 -13.02989 -12.96739 -12.39274 -12.32195 -11.99240 -11.56883 -11.44234 -11.25797 -11.21583 -10.90631 -10.88408 -10.61353 -10.32316 -10.01866 -9.98261 -9.79564 -8.91051 -8.74146 -8.58437 -8.01515 -6.85508 -5.76530 -3.24298 1.46076 2.55926 2.70637 3.34189 3.39827 3.44140 3.45575 3.55243 4.26772 4.40703 4.48290 4.69559 4.90303 4.98965 5.16294 5.33893 5.37945 5.42548 5.43976 5.58871 5.61037 5.74380 5.82632 5.85539 5.90165 5.99474 6.13885 6.22345 6.61313 6.64813 6.67967 6.70246 6.86345 6.95618 7.27316 7.34312 7.69311 7.74755 7.78016 8.34078 8.42321 9.18494 9.80184 10.28216 11.28500 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037001 B = 0.002938 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.548370 B = 9528.675516 C = 9573.314343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.596 5.596 3 C -0.262 4.262 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.725 5.725 14 C 0.582 3.418 15 O -0.528 6.528 16 C -0.038 4.038 17 C -0.088 4.088 18 C -0.198 4.198 19 C 0.012 3.988 20 N -0.525 5.525 21 H 0.412 0.588 22 C -0.040 4.040 23 C -0.115 4.115 24 C -0.049 4.049 25 H 0.030 0.970 26 H 0.048 0.952 27 H -0.002 1.002 28 H 0.254 0.746 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.388 0.612 34 H 0.146 0.854 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.685 -22.134 -1.046 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.318 5.318 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.031 4.031 13 N -0.375 5.375 14 C 0.368 3.632 15 O -0.404 6.404 16 C -0.150 4.150 17 C -0.114 4.114 18 C -0.204 4.204 19 C -0.106 4.106 20 N -0.121 5.121 21 H 0.249 0.751 22 C -0.079 4.079 23 C -0.153 4.153 24 C -0.087 4.087 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.016 0.984 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.220 0.780 34 H 0.164 0.836 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.243 -21.441 -0.374 23.765 hybrid contribution 0.301 1.019 -0.871 1.374 sum 10.544 -20.422 -1.244 23.017 Atomic orbital electron populations 1.20862 0.82088 0.95763 0.99559 1.43929 1.02089 1.00295 1.85528 1.19224 0.98182 0.85195 1.36537 0.91195 1.25079 0.97658 0.98745 0.98013 1.70067 1.17762 1.27298 1.39818 0.86200 0.78841 0.83808 0.77337 1.21418 1.21618 1.20431 1.20992 0.96317 0.89013 0.92109 1.22591 0.95803 0.82368 1.02298 1.46104 1.58631 1.25633 1.07157 1.17061 0.78974 0.82570 0.84603 1.90862 1.54802 1.63751 1.31031 1.20602 1.11076 0.97323 0.86009 1.20683 0.99789 0.93209 0.97765 1.20336 1.07677 0.98688 0.93745 1.21296 1.02086 0.91368 0.95813 1.41503 1.44624 1.17711 1.08214 0.75067 1.20685 0.97547 0.91155 0.98480 1.22324 0.98785 1.00601 0.93594 1.20453 0.97535 0.93153 0.97565 0.95140 0.93363 0.98394 0.93566 0.93391 0.94053 0.91901 0.91023 0.77987 0.83601 0.90898 0.89998 0.90708 0.90176 0.90948 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 9.01 59.85 0.54 4.53 16 2 N -0.60 -14.91 2.93 -181.11 -0.53 -15.44 16 3 C -0.26 -7.18 9.67 -15.06 -0.15 -7.33 16 4 H 0.07 1.87 7.84 -52.49 -0.41 1.45 16 5 C 0.00 0.11 5.13 -17.43 -0.09 0.02 16 6 N -0.91 -26.59 10.58 55.49 0.59 -26.00 16 7 Si 0.91 21.98 29.57 -169.99 -5.03 16.95 16 8 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 C 0.14 2.84 5.82 -4.04 -0.02 2.82 16 12 C 0.09 1.87 6.00 -4.04 -0.02 1.85 16 13 N -0.72 -11.30 5.55 -61.62 -0.34 -11.64 16 14 C 0.58 10.04 7.79 -12.85 -0.10 9.94 16 15 O -0.53 -11.41 16.88 5.19 0.09 -11.32 16 16 C -0.04 -0.54 7.07 -81.79 -0.58 -1.12 16 17 C -0.09 -1.23 10.66 -39.06 -0.42 -1.64 16 18 C -0.20 -2.27 6.89 -104.55 -0.72 -2.99 16 19 C 0.01 0.12 8.02 -81.30 -0.65 -0.53 16 20 N -0.52 -5.59 6.03 -5.24 -0.03 -5.62 16 21 H 0.41 3.18 8.20 -40.82 -0.33 2.85 16 22 C -0.04 -0.27 6.79 -26.75 -0.18 -0.45 16 23 C -0.12 -0.67 7.12 -25.26 -0.18 -0.85 16 24 C -0.05 -0.40 6.78 -26.84 -0.18 -0.58 16 25 H 0.03 0.82 7.42 -51.93 -0.39 0.43 16 26 H 0.05 1.27 7.19 -51.93 -0.37 0.90 16 27 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 30 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.39 4.55 7.61 -40.82 -0.31 4.24 16 34 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 333.11 15.07 5.02 5.02 Total: -1.00 -33.86 333.11 -8.98 -42.83 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.99 Total: 1.57 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -2.75 Total: 3.66 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.32 Total: -58.71 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.86 -8.98 -42.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663313433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.801 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds