Wall clock time and date at job start Mon Mar 30 2020 01:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 120.00238 * 2 1 4 4 H 1.08000 * 119.99794 * 202.34739 * 3 2 1 5 5 C 1.38812 * 119.99970 * 22.34627 * 3 2 1 6 6 N 1.31611 * 119.99861 * 11.34576 * 5 3 2 7 7 Si 1.86796 * 119.99906 * 191.34345 * 5 3 2 8 8 H 1.48509 * 109.47126 * 90.00282 * 7 5 3 9 9 H 1.48494 * 109.47211 * 210.00159 * 7 5 3 10 10 H 1.48504 * 109.47578 * 330.00278 * 7 5 3 11 11 C 1.46508 * 119.99725 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46580 * 269.99963 * 11 2 1 13 13 N 1.46498 * 109.46690 * 179.97438 * 12 11 2 14 14 C 1.34776 * 119.99827 * 179.97438 * 13 12 11 15 15 O 1.21695 * 119.99997 * 0.02562 * 14 13 12 16 16 C 1.46687 * 119.99796 * 179.97438 * 14 13 12 17 17 C 1.37759 * 126.22272 * 180.02562 * 16 14 13 18 18 C 1.40106 * 107.10693 * 179.97438 * 17 16 14 19 19 C 1.35582 * 108.06912 * 0.02562 * 18 17 16 20 20 N 1.36002 * 108.63911 * 359.92909 * 19 18 17 21 21 H 0.97007 * 125.62984 * 179.97438 * 20 19 18 22 22 C 1.51501 * 110.16260 * 179.97438 * 19 18 17 23 23 C 1.54407 * 105.03133 * 343.02613 * 22 19 18 24 24 C 1.51345 * 141.74122 * 179.97438 * 18 17 16 25 25 H 1.09001 * 109.46898 * 274.21379 * 1 2 3 26 26 H 1.08998 * 109.47098 * 34.20664 * 1 2 3 27 27 H 1.09000 * 109.47039 * 154.20689 * 1 2 3 28 28 H 0.97006 * 119.99930 * 180.02562 * 6 5 3 29 29 H 1.08994 * 109.47066 * 149.99840 * 11 2 1 30 30 H 1.08998 * 109.46997 * 29.99286 * 11 2 1 31 31 H 1.08994 * 109.47521 * 60.00156 * 12 11 2 32 32 H 1.08998 * 109.46903 * 299.99381 * 12 11 2 33 33 H 0.96998 * 120.00299 * 0.02562 * 13 12 11 34 34 H 1.08005 * 126.44682 * 359.96301 * 17 16 14 35 35 H 1.08997 * 110.32973 * 224.13242 * 22 19 18 36 36 H 1.09000 * 110.41562 * 101.95834 * 22 19 18 37 37 H 1.09004 * 110.91853 * 267.65821 * 23 22 19 38 38 H 1.08994 * 110.95063 * 144.03760 * 23 22 19 39 39 H 1.08997 * 110.33963 * 78.12366 * 24 18 17 40 40 H 1.08999 * 110.33600 * 315.97932 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1689 1.2209 -0.3556 5 6 1.5339 2.3429 0.4571 6 7 0.3843 2.2690 1.0936 7 14 2.3369 4.0046 0.1688 8 1 1.8681 4.5632 -1.1250 9 1 1.9684 4.9301 1.2700 10 1 3.8125 3.8418 0.1319 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7110 1.4418 13 7 3.1843 -2.9801 1.4413 14 6 3.5216 -3.5640 2.6082 15 8 3.2177 -3.0372 3.6624 16 6 4.2539 -4.8350 2.6077 17 6 4.6607 -5.5406 3.7187 18 6 5.3210 -6.6878 3.2594 19 6 5.3084 -6.6659 1.9038 20 7 4.6602 -5.5429 1.4933 21 1 4.5102 -5.2823 0.5710 22 6 6.0133 -7.8895 1.3552 23 6 6.8347 -8.4431 2.5397 24 6 6.0350 -7.9267 3.7552 25 1 -0.3633 0.0755 1.0249 26 1 -0.3633 0.8499 -0.5777 27 1 -0.3633 -0.9253 -0.4472 28 1 -0.0462 3.0776 1.4126 29 1 3.1499 -1.1383 -0.5143 30 1 1.6083 -2.0282 -0.5146 31 1 1.5001 -1.8416 1.9556 32 1 3.0416 -0.9517 1.9559 33 1 3.4269 -3.3998 0.6011 34 1 4.5009 -5.2618 4.7499 35 1 6.6736 -7.6099 0.5343 36 1 5.2861 -8.6291 1.0202 37 1 7.8453 -8.0345 2.5372 38 1 6.8575 -9.5327 2.5227 39 1 5.3128 -8.6762 4.0789 40 1 6.7095 -7.6734 4.5731 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663313433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:46 Heat of formation + Delta-G solvation = 10.773882 kcal Electronic energy + Delta-G solvation = -20683.654800 eV Core-core repulsion = 17498.796401 eV Total energy + Delta-G solvation = -3184.858400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.57849 -40.40700 -37.89934 -36.83524 -35.83281 -33.33885 -32.03521 -30.45780 -28.55865 -28.08367 -27.92578 -25.37557 -23.51121 -22.48540 -21.94202 -21.06503 -20.04838 -19.15972 -18.76707 -17.12032 -16.82278 -16.76502 -16.55905 -16.36091 -15.55537 -15.29090 -15.00382 -14.60978 -14.49319 -14.20670 -14.11597 -13.86849 -13.53577 -13.14641 -12.83324 -12.73688 -12.67341 -12.49602 -12.34930 -12.12525 -12.05126 -11.94740 -11.81672 -11.71092 -11.32689 -10.69369 -10.28100 -9.83429 -8.92345 -8.90454 -7.87761 -5.37936 0.36038 1.45154 1.46217 1.55199 1.64211 1.81289 2.04487 2.28372 2.49684 3.27694 3.56225 3.70578 3.81749 3.91733 4.17910 4.24739 4.27609 4.29374 4.44490 4.58046 4.61437 4.81299 4.88078 4.92729 5.00018 5.01608 5.07815 5.12030 5.17512 5.28223 5.29397 5.34315 5.46180 5.59746 5.69748 5.73979 5.93418 6.27747 6.41581 6.56172 7.07976 7.10616 7.79773 8.22156 9.15972 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037001 B = 0.002938 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.548370 B = 9528.675516 C = 9573.314343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.614 5.614 3 C -0.268 4.268 4 H 0.077 0.923 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.972 3.028 8 H -0.281 1.281 9 H -0.298 1.298 10 H -0.268 1.268 11 C 0.148 3.852 12 C 0.115 3.885 13 N -0.707 5.707 14 C 0.582 3.418 15 O -0.584 6.584 16 C -0.065 4.065 17 C -0.105 4.105 18 C -0.223 4.223 19 C 0.033 3.967 20 N -0.512 5.512 21 H 0.427 0.573 22 C -0.039 4.039 23 C -0.108 4.108 24 C -0.052 4.052 25 H -0.001 1.001 26 H 0.023 0.977 27 H 0.036 0.964 28 H 0.249 0.751 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.411 0.589 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.779 -24.893 -3.291 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.337 5.337 3 C -0.398 4.398 4 H 0.095 0.905 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.800 3.200 8 H -0.208 1.208 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.020 3.980 12 C -0.011 4.011 13 N -0.358 5.358 14 C 0.371 3.629 15 O -0.464 6.464 16 C -0.177 4.177 17 C -0.132 4.132 18 C -0.228 4.228 19 C -0.087 4.087 20 N -0.109 5.109 21 H 0.267 0.733 22 C -0.077 4.077 23 C -0.146 4.146 24 C -0.090 4.090 25 H 0.017 0.983 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.247 0.753 34 H 0.150 0.850 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.372 -24.246 -2.691 27.352 hybrid contribution -0.284 1.699 -0.163 1.730 sum 12.088 -22.547 -2.854 25.742 Atomic orbital electron populations 1.20621 0.82372 0.96570 0.97551 1.44180 1.02401 1.01558 1.85557 1.19604 0.98425 0.86353 1.35415 0.90530 1.25891 0.98447 1.02263 0.98447 1.70248 1.19291 1.27628 1.41392 0.85189 0.78428 0.79477 0.76880 1.20768 1.22461 1.19238 1.21141 0.97251 0.87710 0.91857 1.22029 0.94230 0.83158 1.01725 1.45716 1.57847 1.24190 1.08095 1.17447 0.78336 0.83241 0.83908 1.90826 1.57141 1.65510 1.32947 1.19978 1.13246 0.96948 0.87566 1.20849 1.00351 0.94607 0.97404 1.20766 1.08068 0.99124 0.94875 1.22113 0.99599 0.91141 0.95836 1.41399 1.43928 1.17424 1.08123 0.73288 1.20931 0.98043 0.89447 0.99266 1.22375 0.98348 1.02172 0.91672 1.20597 0.97760 0.91798 0.98839 0.98310 0.95820 0.94508 0.94223 0.91563 0.90559 0.94504 0.94880 0.75290 0.84989 0.88805 0.87977 0.90268 0.87553 0.90200 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.64 9.01 127.77 1.15 9.79 16 2 N -0.61 -30.59 2.93 -726.91 -2.13 -32.72 16 3 C -0.27 -14.70 9.67 84.03 0.81 -13.89 16 4 H 0.08 4.02 7.84 -2.91 -0.02 4.00 16 5 C -0.06 -3.15 5.13 84.86 0.44 -2.71 16 6 N -0.94 -56.89 10.58 21.65 0.23 -56.66 16 7 Si 0.97 45.69 29.57 68.60 2.03 47.72 16 8 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 9 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 C 0.15 5.58 5.82 86.38 0.50 6.08 16 12 C 0.12 4.62 6.00 86.38 0.52 5.14 16 13 N -0.71 -21.76 5.55 -467.08 -2.59 -24.36 16 14 C 0.58 20.62 7.79 86.45 0.67 21.29 16 15 O -0.58 -26.77 16.88 -4.33 -0.07 -26.84 16 16 C -0.07 -1.85 7.07 40.24 0.28 -1.57 16 17 C -0.10 -2.98 10.66 22.61 0.24 -2.74 16 18 C -0.22 -4.78 6.89 -19.82 -0.14 -4.92 16 19 C 0.03 0.57 8.02 41.55 0.33 0.90 16 20 N -0.51 -9.79 6.03 -170.48 -1.03 -10.81 16 21 H 0.43 5.29 8.20 -92.70 -0.76 4.53 16 22 C -0.04 -0.33 6.79 30.58 0.21 -0.12 16 23 C -0.11 -0.81 7.12 31.55 0.22 -0.58 16 24 C -0.05 -0.71 6.78 30.53 0.21 -0.51 16 25 H 0.00 -0.08 7.42 -2.39 -0.02 -0.10 16 26 H 0.02 1.25 7.19 -2.39 -0.02 1.24 16 27 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 28 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 29 H 0.07 2.29 8.03 -2.39 -0.02 2.27 16 30 H 0.08 2.39 7.86 -2.39 -0.02 2.37 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.41 8.77 7.61 -92.71 -0.71 8.07 16 34 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 35 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -77.30 333.11 1.48 -75.82 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -0.41 Total: 11.68 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 5.45 Total: 16.18 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -5.52 Total: -124.55 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.07 Total: -26.84 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -77.30 1.48 -75.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663313433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.592 kcal (2) G-P(sol) polarization free energy of solvation -77.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds