Wall clock time and date at job start Mon Mar 30 2020 01:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99864 * 2 1 4 4 H 1.07999 * 120.00057 * 154.62339 * 3 2 1 5 5 C 1.38818 * 120.00009 * 334.62756 * 3 2 1 6 6 N 1.31618 * 119.99903 * 3.91697 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 183.91431 * 5 3 2 8 8 H 1.48496 * 109.47372 * 90.00305 * 7 5 3 9 9 H 1.48506 * 109.46573 * 209.99724 * 7 5 3 10 10 H 1.48498 * 109.47266 * 329.99623 * 7 5 3 11 11 C 1.46501 * 120.00259 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47229 * 89.99516 * 11 2 1 13 13 H 1.08997 * 110.88882 * 302.57279 * 12 11 2 14 14 C 1.55155 * 111.00022 * 178.65134 * 12 11 2 15 15 C 1.54335 * 102.93962 * 206.42662 * 14 12 11 16 16 N 1.47019 * 107.26921 * 22.19177 * 15 14 12 17 17 C 1.34780 * 125.64687 * 181.02161 * 16 15 14 18 18 O 1.21620 * 119.99847 * 180.02562 * 17 16 15 19 19 C 1.47266 * 119.99795 * 0.04495 * 17 16 15 20 20 C 1.46684 * 126.94233 * 179.97438 * 19 17 16 21 21 C 1.34485 * 106.33606 * 179.97438 * 20 19 17 22 22 N 1.36445 * 108.85505 * 359.97438 * 21 20 19 23 23 H 0.96999 * 124.85027 * 180.02562 * 22 21 20 24 24 C 1.34656 * 110.29563 * 359.75694 * 22 21 20 25 25 C 1.47419 * 108.70689 * 1.06226 * 16 15 14 26 26 H 1.09000 * 109.47073 * 84.46793 * 1 2 3 27 27 H 1.08997 * 109.47587 * 324.46410 * 1 2 3 28 28 H 1.08999 * 109.47159 * 204.46337 * 1 2 3 29 29 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 30 30 H 1.08997 * 109.46951 * 209.99992 * 11 2 1 31 31 H 1.09001 * 109.46532 * 329.99964 * 11 2 1 32 32 H 1.08994 * 110.72426 * 324.78585 * 14 12 11 33 33 H 1.08992 * 110.72207 * 88.06697 * 14 12 11 34 34 H 1.08998 * 109.88044 * 262.77601 * 15 14 12 35 35 H 1.08998 * 110.00984 * 141.68451 * 15 14 12 36 36 H 1.08009 * 126.83359 * 359.95577 * 20 19 17 37 37 H 1.07999 * 125.57197 * 179.97438 * 21 20 19 38 38 H 1.08002 * 125.80168 * 180.29232 * 24 22 21 39 39 H 1.08999 * 110.36826 * 217.02883 * 25 16 15 40 40 H 1.09007 * 110.46464 * 94.75213 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1515 1.2311 0.4008 5 6 1.5560 2.3301 -0.5151 6 7 0.3083 2.2932 -0.9326 7 14 2.5279 3.9222 -0.6157 8 1 3.2250 3.9948 -1.9248 9 1 1.6026 5.0761 -0.4830 10 1 3.5285 3.9614 0.4809 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 1.5156 -1.8033 -1.9924 14 6 3.2574 -3.0356 -1.4853 15 6 3.9809 -2.9575 -2.8463 16 7 4.0444 -1.5386 -3.2261 17 6 4.5841 -1.0528 -4.3616 18 8 4.5815 0.1450 -4.5721 19 6 5.1766 -1.9725 -5.3474 20 6 5.8006 -1.6125 -6.6252 21 6 6.1989 -2.7662 -7.1900 22 7 5.8696 -3.7993 -6.3618 23 1 6.0509 -4.7347 -6.5434 24 6 5.2624 -3.3342 -5.2535 25 6 3.4208 -0.7352 -2.1590 26 1 -0.3633 0.0991 -1.0229 27 1 -0.3634 0.8362 0.5973 28 1 -0.3633 -0.9354 0.4256 29 1 -0.1064 3.0926 -1.2929 30 1 3.1499 -1.1385 0.5133 31 1 1.6084 -2.0285 0.5130 32 1 3.9771 -3.0760 -0.6678 33 1 2.5874 -3.8947 -1.4536 34 1 3.4218 -3.5173 -3.5960 35 1 4.9888 -3.3628 -2.7567 36 1 5.9169 -0.6186 -7.0317 37 1 6.6978 -2.8596 -8.1433 38 1 4.9022 -3.9347 -4.4313 39 1 2.8690 0.1015 -2.5873 40 1 4.1776 -0.3730 -1.4630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664812561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:16 Heat of formation + Delta-G solvation = 49.283645 kcal Electronic energy + Delta-G solvation = -21825.980130 eV Core-core repulsion = 18642.791638 eV Total energy + Delta-G solvation = -3183.188491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.17446 -39.22234 -37.11973 -35.23193 -32.27587 -31.01902 -30.41838 -29.54033 -28.32572 -25.78334 -25.54052 -23.69871 -21.41992 -21.20575 -20.62577 -19.47477 -19.38374 -17.64780 -16.77375 -16.18215 -15.70385 -14.80714 -14.73342 -14.28941 -13.90398 -13.82949 -13.44150 -13.16840 -13.08306 -12.94243 -12.71208 -12.21402 -12.13452 -11.99597 -11.47720 -11.11621 -10.95933 -10.73116 -10.61476 -10.27769 -10.21089 -9.98345 -9.87138 -9.66909 -9.45672 -8.86376 -8.44921 -8.39853 -8.12330 -6.65039 -5.64745 -3.10958 1.83951 2.43138 3.08522 3.48812 3.51713 3.55247 3.59644 3.85703 4.59378 4.81142 4.84324 4.92246 5.01240 5.13578 5.25791 5.41617 5.53555 5.59015 5.68523 5.81172 5.92678 6.00813 6.04953 6.09060 6.27050 6.33843 6.57711 6.59790 6.67423 6.83222 6.84289 6.86904 7.00386 7.06099 7.32084 7.55845 7.85325 7.93731 8.03641 8.51157 8.72672 9.35295 9.96170 10.45465 11.40115 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021065 B = 0.005012 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.884850 B = 5585.740945 C = 6570.089199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.605 5.605 3 C -0.254 4.254 4 H 0.067 0.933 5 C 0.010 3.990 6 N -0.908 5.908 7 Si 0.896 3.104 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.164 3.836 12 C -0.116 4.116 13 H 0.074 0.926 14 C -0.131 4.131 15 C 0.098 3.902 16 N -0.618 5.618 17 C 0.594 3.406 18 O -0.542 6.542 19 C -0.217 4.217 20 C -0.143 4.143 21 C -0.027 4.027 22 N -0.556 5.556 23 H 0.414 0.586 24 C 0.027 3.973 25 C 0.131 3.869 26 H 0.023 0.977 27 H 0.052 0.948 28 H -0.010 1.010 29 H 0.252 0.748 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.182 0.818 39 H 0.088 0.912 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.305 -17.586 -7.724 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.328 5.328 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.188 4.188 6 N -0.553 5.553 7 Si 0.726 3.274 8 H -0.209 1.209 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.036 3.964 12 C -0.138 4.138 13 H 0.093 0.907 14 C -0.170 4.170 15 C -0.026 4.026 16 N -0.352 5.352 17 C 0.384 3.616 18 O -0.420 6.420 19 C -0.227 4.227 20 C -0.167 4.167 21 C -0.155 4.155 22 N -0.151 5.151 23 H 0.250 0.750 24 C -0.108 4.108 25 C 0.010 3.990 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.008 0.992 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.165 0.835 37 H 0.185 0.815 38 H 0.199 0.801 39 H 0.106 0.894 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.235 -16.843 -7.991 20.804 hybrid contribution 0.561 0.428 -0.407 0.815 sum 9.796 -16.415 -8.398 20.879 Atomic orbital electron populations 1.20863 0.82416 0.95203 0.99255 1.43939 1.01965 1.00589 1.86260 1.19125 0.99129 0.86259 1.33791 0.91496 1.25102 0.96423 0.98679 0.98588 1.70069 1.11278 1.27962 1.45979 0.86380 0.79366 0.83314 0.78338 1.20940 1.21780 1.20564 1.20781 0.95907 0.88372 0.91389 1.23179 0.97298 0.92158 1.01192 0.90719 1.22733 0.99306 0.99359 0.95583 1.22220 0.99547 0.83607 0.97210 1.48542 1.58958 1.07888 1.19805 1.17067 0.77657 0.87179 0.79697 1.90797 1.58603 1.15718 1.76853 1.20583 1.11180 0.92326 0.98618 1.21995 1.02327 0.98098 0.94326 1.21773 1.08502 0.86837 0.98361 1.41630 1.47364 1.09401 1.16671 0.74955 1.22719 1.00905 0.95102 0.92038 1.22187 0.94872 0.94514 0.87461 0.95818 0.92956 0.99200 0.93782 0.93653 0.94053 0.90714 0.90637 0.91889 0.91938 0.83540 0.81477 0.80120 0.89400 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.16 8.99 59.85 0.54 4.70 16 2 N -0.60 -15.04 2.88 -181.12 -0.52 -15.56 16 3 C -0.25 -6.97 8.72 -15.06 -0.13 -7.10 16 4 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 5 C 0.01 0.30 5.38 -17.43 -0.09 0.20 16 6 N -0.91 -26.96 10.13 55.49 0.56 -26.40 16 7 Si 0.90 22.96 29.56 -169.99 -5.02 17.94 16 8 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 9 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 C 0.16 3.21 5.25 -4.04 -0.02 3.19 16 12 C -0.12 -2.06 3.29 -88.47 -0.29 -2.35 16 13 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 14 C -0.13 -1.65 6.42 -24.89 -0.16 -1.81 16 15 C 0.10 1.21 5.01 -3.06 -0.02 1.20 16 16 N -0.62 -10.99 3.33 -171.84 -0.57 -11.56 16 17 C 0.59 11.65 7.84 -12.59 -0.10 11.55 16 18 O -0.54 -13.20 17.23 5.26 0.09 -13.11 16 19 C -0.22 -3.32 6.26 -103.35 -0.65 -3.96 16 20 C -0.14 -1.95 10.97 -37.50 -0.41 -2.36 16 21 C -0.03 -0.26 11.89 -16.83 -0.20 -0.46 16 22 N -0.56 -4.49 5.90 -12.85 -0.08 -4.57 16 23 H 0.41 1.69 8.96 -40.82 -0.37 1.33 16 24 C 0.03 0.29 10.42 -16.84 -0.18 0.12 16 25 C 0.13 2.69 5.36 -2.53 -0.01 2.68 16 26 H 0.02 0.64 7.43 -51.93 -0.39 0.25 16 27 H 0.05 1.42 7.04 -51.93 -0.37 1.05 16 28 H -0.01 -0.23 7.83 -51.93 -0.41 -0.63 16 29 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.05 0.87 7.99 -51.93 -0.42 0.45 16 31 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 32 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.68 6.89 -51.93 -0.36 0.32 16 35 H 0.06 0.64 7.00 -51.93 -0.36 0.27 16 36 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 37 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.18 1.48 4.42 -52.49 -0.23 1.25 16 39 H 0.09 2.25 8.03 -51.93 -0.42 1.83 16 40 H 0.06 1.39 8.00 -51.92 -0.42 0.97 16 LS Contribution 324.16 15.07 4.89 4.89 Total: -1.00 -35.54 324.16 -8.16 -43.70 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.79 Total: -0.91 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -1.72 Total: 5.59 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.61 Total: -58.09 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.54 -8.16 -43.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664812561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.987 kcal (2) G-P(sol) polarization free energy of solvation -35.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds