Wall clock time and date at job start Mon Mar 30 2020 01:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99864 * 2 1 4 4 H 1.07999 * 120.00057 * 154.62339 * 3 2 1 5 5 C 1.38818 * 120.00009 * 334.62756 * 3 2 1 6 6 N 1.31618 * 119.99903 * 3.91697 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 183.91431 * 5 3 2 8 8 H 1.48496 * 109.47372 * 90.00305 * 7 5 3 9 9 H 1.48506 * 109.46573 * 209.99724 * 7 5 3 10 10 H 1.48498 * 109.47266 * 329.99623 * 7 5 3 11 11 C 1.46501 * 120.00259 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47229 * 89.99516 * 11 2 1 13 13 H 1.08997 * 110.88882 * 302.57279 * 12 11 2 14 14 C 1.55155 * 111.00022 * 178.65134 * 12 11 2 15 15 C 1.54335 * 102.93962 * 206.42662 * 14 12 11 16 16 N 1.47019 * 107.26921 * 22.19177 * 15 14 12 17 17 C 1.34780 * 125.64687 * 181.02161 * 16 15 14 18 18 O 1.21620 * 119.99847 * 180.02562 * 17 16 15 19 19 C 1.47266 * 119.99795 * 0.04495 * 17 16 15 20 20 C 1.46684 * 126.94233 * 179.97438 * 19 17 16 21 21 C 1.34485 * 106.33606 * 179.97438 * 20 19 17 22 22 N 1.36445 * 108.85505 * 359.97438 * 21 20 19 23 23 H 0.96999 * 124.85027 * 180.02562 * 22 21 20 24 24 C 1.34656 * 110.29563 * 359.75694 * 22 21 20 25 25 C 1.47419 * 108.70689 * 1.06226 * 16 15 14 26 26 H 1.09000 * 109.47073 * 84.46793 * 1 2 3 27 27 H 1.08997 * 109.47587 * 324.46410 * 1 2 3 28 28 H 1.08999 * 109.47159 * 204.46337 * 1 2 3 29 29 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 30 30 H 1.08997 * 109.46951 * 209.99992 * 11 2 1 31 31 H 1.09001 * 109.46532 * 329.99964 * 11 2 1 32 32 H 1.08994 * 110.72426 * 324.78585 * 14 12 11 33 33 H 1.08992 * 110.72207 * 88.06697 * 14 12 11 34 34 H 1.08998 * 109.88044 * 262.77601 * 15 14 12 35 35 H 1.08998 * 110.00984 * 141.68451 * 15 14 12 36 36 H 1.08009 * 126.83359 * 359.95577 * 20 19 17 37 37 H 1.07999 * 125.57197 * 179.97438 * 21 20 19 38 38 H 1.08002 * 125.80168 * 180.29232 * 24 22 21 39 39 H 1.08999 * 110.36826 * 217.02883 * 25 16 15 40 40 H 1.09007 * 110.46464 * 94.75213 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1515 1.2311 0.4008 5 6 1.5560 2.3301 -0.5151 6 7 0.3083 2.2932 -0.9326 7 14 2.5279 3.9222 -0.6157 8 1 3.2250 3.9948 -1.9248 9 1 1.6026 5.0761 -0.4830 10 1 3.5285 3.9614 0.4809 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 1.5156 -1.8033 -1.9924 14 6 3.2574 -3.0356 -1.4853 15 6 3.9809 -2.9575 -2.8463 16 7 4.0444 -1.5386 -3.2261 17 6 4.5841 -1.0528 -4.3616 18 8 4.5815 0.1450 -4.5721 19 6 5.1766 -1.9725 -5.3474 20 6 5.8006 -1.6125 -6.6252 21 6 6.1989 -2.7662 -7.1900 22 7 5.8696 -3.7993 -6.3618 23 1 6.0509 -4.7347 -6.5434 24 6 5.2624 -3.3342 -5.2535 25 6 3.4208 -0.7352 -2.1590 26 1 -0.3633 0.0991 -1.0229 27 1 -0.3634 0.8362 0.5973 28 1 -0.3633 -0.9354 0.4256 29 1 -0.1064 3.0926 -1.2929 30 1 3.1499 -1.1385 0.5133 31 1 1.6084 -2.0285 0.5130 32 1 3.9771 -3.0760 -0.6678 33 1 2.5874 -3.8947 -1.4536 34 1 3.4218 -3.5173 -3.5960 35 1 4.9888 -3.3628 -2.7567 36 1 5.9169 -0.6186 -7.0317 37 1 6.6978 -2.8596 -8.1433 38 1 4.9022 -3.9347 -4.4313 39 1 2.8690 0.1015 -2.5873 40 1 4.1776 -0.3730 -1.4630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664812561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:16 Heat of formation + Delta-G solvation = 23.518202 kcal Electronic energy + Delta-G solvation = -21827.097403 eV Core-core repulsion = 18642.791638 eV Total energy + Delta-G solvation = -3184.305765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.10496 -40.55952 -38.67951 -37.07309 -33.98705 -32.51658 -31.67273 -30.62220 -29.61295 -27.89103 -27.14943 -25.09852 -23.03063 -22.43133 -21.55823 -20.96620 -20.47800 -18.85838 -18.63832 -17.47610 -17.19941 -16.68820 -16.15356 -15.65604 -15.23163 -15.11391 -14.72826 -14.70439 -14.62591 -14.28786 -13.94846 -13.66207 -13.57972 -13.37427 -12.96744 -12.94420 -12.68787 -12.62178 -12.27059 -12.06089 -12.03609 -11.71991 -11.55551 -11.37703 -11.00435 -10.60237 -9.89461 -9.51694 -9.30796 -8.71376 -7.84598 -5.28980 0.77766 1.36828 1.45549 1.46779 1.52806 2.06202 2.47842 2.50128 2.55224 3.32568 3.56316 3.78215 3.89544 4.03698 4.10624 4.19657 4.35426 4.36113 4.52743 4.54799 4.73204 4.79985 4.88635 4.95929 4.98706 5.00673 5.06751 5.09060 5.15132 5.32749 5.43075 5.46451 5.55727 5.65917 5.73612 5.84156 5.93678 6.36947 6.67489 6.73440 7.20114 7.29400 7.92788 8.33965 9.19180 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021065 B = 0.005012 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.884850 B = 5585.740945 C = 6570.089199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.622 5.622 3 C -0.244 4.244 4 H 0.068 0.932 5 C -0.046 4.046 6 N -0.937 5.937 7 Si 0.945 3.055 8 H -0.305 1.305 9 H -0.289 1.289 10 H -0.262 1.262 11 C 0.160 3.840 12 C -0.108 4.108 13 H 0.056 0.944 14 C -0.113 4.113 15 C 0.089 3.911 16 N -0.620 5.620 17 C 0.580 3.420 18 O -0.617 6.617 19 C -0.269 4.269 20 C -0.194 4.194 21 C 0.007 3.993 22 N -0.531 5.531 23 H 0.441 0.559 24 C 0.063 3.937 25 C 0.137 3.863 26 H -0.008 1.008 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.244 0.756 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.210 0.790 38 H 0.216 0.784 39 H 0.019 0.981 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.023 -22.790 -7.660 26.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.346 5.346 3 C -0.374 4.374 4 H 0.086 0.914 5 C -0.241 4.241 6 N -0.584 5.584 7 Si 0.775 3.225 8 H -0.233 1.233 9 H -0.215 1.215 10 H -0.187 1.187 11 C 0.034 3.966 12 C -0.130 4.130 13 H 0.074 0.926 14 C -0.151 4.151 15 C -0.032 4.032 16 N -0.352 5.352 17 C 0.373 3.627 18 O -0.501 6.501 19 C -0.279 4.279 20 C -0.218 4.218 21 C -0.121 4.121 22 N -0.128 5.128 23 H 0.282 0.718 24 C -0.074 4.074 25 C 0.014 3.986 26 H 0.010 0.990 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.142 0.858 37 H 0.227 0.773 38 H 0.232 0.768 39 H 0.037 0.963 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.987 -22.165 -7.903 25.970 hybrid contribution 0.095 1.913 -0.458 1.969 sum 11.082 -20.252 -8.361 24.553 Atomic orbital electron populations 1.20564 0.82727 0.95940 0.97109 1.44198 1.02226 1.01823 1.86313 1.19372 0.98818 0.87430 1.31804 0.91396 1.25697 0.97282 1.01375 0.99721 1.70222 1.12389 1.27968 1.47854 0.85584 0.78532 0.80903 0.77506 1.23284 1.21524 1.18684 1.21025 0.96156 0.86729 0.92729 1.22920 0.96481 0.94704 0.98926 0.92584 1.22742 0.99283 0.96867 0.96204 1.22672 1.02290 0.80363 0.97918 1.48611 1.57843 1.10070 1.18644 1.17929 0.77074 0.87103 0.80564 1.90733 1.61765 1.19062 1.78542 1.20376 1.14710 0.93911 0.98925 1.22078 1.05350 0.99138 0.95235 1.22205 1.05651 0.85402 0.98883 1.41666 1.45257 1.10610 1.15244 0.71764 1.22956 0.98451 0.93168 0.92868 1.21847 0.94638 0.94149 0.87969 0.98951 0.95933 0.95111 0.94654 0.92928 0.90730 0.88873 0.86779 0.89095 0.88225 0.85778 0.77343 0.76831 0.96258 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.17 8.99 127.77 1.15 10.32 16 2 N -0.62 -31.26 2.88 -726.94 -2.09 -33.36 16 3 C -0.24 -13.80 8.72 84.03 0.73 -13.07 16 4 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 5 C -0.05 -2.75 5.38 84.86 0.46 -2.29 16 6 N -0.94 -58.65 10.13 21.65 0.22 -58.43 16 7 Si 0.95 49.57 29.56 68.60 2.03 51.60 16 8 H -0.30 -16.93 7.11 99.48 0.71 -16.22 16 9 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 10 H -0.26 -12.84 7.11 99.48 0.71 -12.14 16 11 C 0.16 5.97 5.25 86.38 0.45 6.42 16 12 C -0.11 -3.72 3.29 -9.40 -0.03 -3.75 16 13 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 14 C -0.11 -2.29 6.42 31.79 0.20 -2.08 16 15 C 0.09 1.83 5.01 86.73 0.43 2.26 16 16 N -0.62 -22.18 3.33 -815.82 -2.71 -24.89 16 17 C 0.58 23.96 7.84 86.62 0.68 24.64 16 18 O -0.62 -33.23 17.23 -4.09 -0.07 -33.30 16 19 C -0.27 -8.10 6.26 -19.04 -0.12 -8.22 16 20 C -0.19 -5.30 10.97 23.62 0.26 -5.04 16 21 C 0.01 0.11 11.89 83.12 0.99 1.10 16 22 N -0.53 -5.79 5.90 -194.56 -1.15 -6.94 16 23 H 0.44 0.65 8.96 -92.71 -0.83 -0.18 16 24 C 0.06 1.09 10.42 83.92 0.87 1.96 16 25 C 0.14 5.90 5.36 86.86 0.47 6.37 16 26 H -0.01 -0.45 7.43 -2.39 -0.02 -0.46 16 27 H 0.02 1.24 7.04 -2.39 -0.02 1.22 16 28 H 0.03 1.28 7.83 -2.39 -0.02 1.26 16 29 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.05 1.90 7.99 -2.39 -0.02 1.88 16 31 H 0.07 2.33 7.86 -2.39 -0.02 2.31 16 32 H 0.09 1.63 8.04 -2.39 -0.02 1.61 16 33 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.43 6.89 -2.39 -0.02 1.42 16 35 H 0.10 1.41 7.00 -2.39 -0.02 1.39 16 36 H 0.12 3.78 8.06 -2.91 -0.02 3.75 16 37 H 0.21 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.22 2.10 4.42 -2.91 -0.01 2.08 16 39 H 0.02 1.06 8.03 -2.39 -0.02 1.04 16 40 H 0.05 2.21 8.00 -2.38 -0.02 2.19 16 Total: -1.00 -89.63 324.16 2.98 -86.65 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: 0.22 Total: 0.07 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 6.54 Total: 18.61 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -5.73 Total: -123.62 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.07 Total: -33.30 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.03 Total: 51.60 kcal Total: -89.63 2.98 -86.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664812561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.166 kcal (2) G-P(sol) polarization free energy of solvation -89.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds