Wall clock time and date at job start Mon Mar 30 2020 01:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36937 * 119.99937 * 2 1 4 4 H 1.07998 * 120.00148 * 322.03349 * 3 2 1 5 5 C 1.38811 * 120.00365 * 142.03799 * 3 2 1 6 6 N 1.31615 * 120.00460 * 157.02079 * 5 3 2 7 7 Si 1.86812 * 119.99605 * 337.01994 * 5 3 2 8 8 H 1.48500 * 109.47062 * 95.67954 * 7 5 3 9 9 H 1.48500 * 109.46931 * 215.68219 * 7 5 3 10 10 H 1.48502 * 109.46809 * 335.67810 * 7 5 3 11 11 C 1.46501 * 120.00240 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46739 * 89.99944 * 11 2 1 13 13 C 1.53007 * 109.46688 * 180.02562 * 12 11 2 14 14 N 1.46499 * 109.46819 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99869 * 180.02562 * 14 13 12 16 16 O 1.21791 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.41518 * 120.00205 * 179.97438 * 15 14 13 18 18 C 1.35618 * 120.00156 * 180.02562 * 17 15 14 19 19 C 1.41670 * 119.99955 * 180.02562 * 18 17 15 20 20 C 1.38285 * 126.25765 * 179.68558 * 19 18 17 21 21 C 1.39788 * 107.07509 * 179.87870 * 20 19 18 22 22 C 1.35498 * 107.91256 * 0.38223 * 21 20 19 23 23 N 1.35750 * 108.90930 * 359.76448 * 22 21 20 24 24 H 0.97004 * 125.69495 * 179.97438 * 23 22 21 25 25 H 1.08996 * 109.47089 * 265.65222 * 1 2 3 26 26 H 1.09003 * 109.47191 * 25.65475 * 1 2 3 27 27 H 1.08999 * 109.47266 * 145.64784 * 1 2 3 28 28 H 0.97003 * 120.00090 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.46874 * 330.00465 * 11 2 1 30 30 H 1.08999 * 109.47433 * 210.00320 * 11 2 1 31 31 H 1.09002 * 109.47012 * 60.00606 * 12 11 2 32 32 H 1.08997 * 109.47696 * 299.99862 * 12 11 2 33 33 H 1.08994 * 109.47376 * 60.00191 * 13 12 11 34 34 H 1.09005 * 109.46671 * 299.99852 * 13 12 11 35 35 H 0.96998 * 120.00297 * 359.97438 * 14 13 12 36 36 H 1.07999 * 120.00119 * 0.27245 * 17 15 14 37 37 H 1.08007 * 119.99840 * 359.97438 * 18 17 15 38 38 H 1.07999 * 126.46238 * 0.02562 * 20 19 18 39 39 H 1.08001 * 126.04077 * 180.14776 * 21 20 19 40 40 H 1.08000 * 125.54591 * 179.73543 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7811 2.0222 -0.5754 5 6 3.3175 1.3132 0.7395 6 7 4.2043 2.2305 0.4165 7 14 3.6304 0.1824 2.1932 8 1 4.4680 -0.9638 1.7574 9 1 4.3367 0.9338 3.2617 10 1 2.3350 -0.3216 2.7160 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4418 13 6 3.2170 -3.0363 -1.4412 14 7 3.4617 -3.4595 -2.8222 15 6 4.1234 -4.6075 -3.0680 16 8 4.5184 -5.2930 -2.1420 17 6 4.3594 -5.0167 -4.4021 18 6 5.0248 -6.1722 -4.6494 19 6 5.2614 -6.5814 -5.9849 20 6 5.9276 -7.7257 -6.3838 21 6 5.9275 -7.7345 -7.7816 22 6 5.2852 -6.6192 -8.2053 23 7 4.8754 -5.9096 -7.1231 24 1 4.3915 -5.0692 -7.1474 25 1 -0.3633 -0.0779 1.0247 26 1 -0.3634 0.9264 -0.4449 27 1 -0.3634 -0.8484 -0.5799 28 1 5.0206 2.3191 0.9330 29 1 1.6084 -2.0282 0.5147 30 1 3.1499 -1.1382 0.5144 31 1 3.0416 -0.9515 -1.9559 32 1 1.5001 -1.8416 -1.9556 33 1 2.6276 -3.7955 -0.9272 34 1 4.1694 -2.9060 -0.9273 35 1 3.1468 -2.9138 -3.5597 36 1 4.0130 -4.4067 -5.2232 37 1 5.3751 -6.7800 -3.8282 38 1 6.3634 -8.4730 -5.7372 39 1 6.3657 -8.4939 -8.4123 40 1 5.1257 -6.3400 -9.2364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707369300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:35 Heat of formation + Delta-G solvation = 45.855889 kcal Electronic energy + Delta-G solvation = -20182.531131 eV Core-core repulsion = 16999.194001 eV Total energy + Delta-G solvation = -3183.337130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.44542 -39.66160 -36.53462 -34.80455 -33.96759 -31.83797 -31.42790 -30.87766 -28.74759 -26.42601 -25.53038 -23.57393 -21.71470 -21.16766 -20.77480 -20.58117 -19.61002 -17.98622 -16.90224 -16.74497 -15.69549 -15.61407 -15.06149 -14.63927 -14.34754 -14.21479 -14.04112 -13.79949 -13.46021 -13.21918 -12.74430 -12.72291 -12.49652 -12.26574 -12.14067 -11.69736 -11.36368 -11.18235 -10.91827 -10.55372 -10.50298 -10.40683 -9.90906 -9.76662 -9.53641 -9.33597 -8.89859 -8.52188 -7.96259 -6.83607 -6.02221 -3.43429 0.45075 2.21159 2.72417 2.85512 3.32279 3.43880 3.47586 3.50169 3.53376 4.51796 4.65578 4.71225 4.80974 4.95868 4.99043 5.09701 5.27469 5.34652 5.50597 5.60057 5.63485 5.77790 5.86136 5.99147 6.06163 6.06802 6.18778 6.27066 6.34349 6.52447 6.54853 6.65750 6.67002 6.69994 6.76671 6.92537 7.09769 7.65249 8.03764 8.34411 8.35546 8.96834 9.69266 10.10731 11.13338 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.002767 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.955023 B =10116.863589 C =10249.875652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.613 5.613 3 C -0.272 4.272 4 H 0.078 0.922 5 C 0.036 3.964 6 N -0.899 5.899 7 Si 0.876 3.124 8 H -0.283 1.283 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.142 3.858 12 C -0.145 4.145 13 C 0.118 3.882 14 N -0.722 5.722 15 C 0.547 3.453 16 O -0.555 6.555 17 C -0.241 4.241 18 C 0.023 3.977 19 C 0.006 3.994 20 C -0.144 4.144 21 C -0.209 4.209 22 C 0.013 3.987 23 N -0.544 5.544 24 H 0.417 0.583 25 H 0.006 0.994 26 H 0.044 0.956 27 H 0.026 0.974 28 H 0.264 0.736 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.399 0.601 36 H 0.114 0.886 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.116 -17.769 -16.775 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.337 5.337 3 C -0.401 4.401 4 H 0.095 0.905 5 C -0.164 4.164 6 N -0.540 5.540 7 Si 0.706 3.294 8 H -0.211 1.211 9 H -0.228 1.228 10 H -0.194 1.194 11 C 0.015 3.985 12 C -0.186 4.186 13 C -0.006 4.006 14 N -0.372 5.372 15 C 0.337 3.663 16 O -0.436 6.436 17 C -0.263 4.263 18 C 0.003 3.997 19 C -0.104 4.104 20 C -0.169 4.169 21 C -0.233 4.233 22 C -0.122 4.122 23 N -0.139 5.139 24 H 0.255 0.745 25 H 0.025 0.975 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.233 0.767 36 H 0.132 0.868 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.417 -17.962 -16.032 24.080 hybrid contribution -0.084 0.235 0.316 0.403 sum 0.332 -17.727 -15.716 23.693 Atomic orbital electron populations 1.21078 0.84600 0.98975 0.97421 1.44044 1.00790 1.01990 1.86831 1.18777 1.06110 0.90855 1.24333 0.90471 1.25482 0.96821 0.96459 0.97685 1.69877 1.08447 1.36219 1.39436 0.86942 0.78067 0.80089 0.84309 1.21103 1.22822 1.19435 1.21038 0.96573 0.87800 0.93042 1.22378 0.99530 0.94666 1.01992 1.21460 1.00595 0.96725 0.81850 1.46036 1.57818 1.23690 1.09695 1.16948 0.78533 0.81296 0.89503 1.90832 1.51921 1.54266 1.46602 1.21775 1.07796 1.00051 0.96677 1.20847 0.91067 0.94471 0.93350 1.18321 1.08660 0.96877 0.86587 1.21553 1.02459 0.97413 0.95474 1.20901 1.07312 0.99998 0.95058 1.22077 1.03287 0.94783 0.92064 1.42214 1.44906 1.20962 1.05779 0.74492 0.97539 0.93675 0.95513 0.92667 0.94116 0.92684 0.90599 0.92309 0.91855 0.91549 0.76682 0.86787 0.83186 0.83754 0.84179 0.81439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.48 10.70 59.84 0.64 3.12 16 2 N -0.61 -14.60 2.47 -181.12 -0.45 -15.05 16 3 C -0.27 -7.60 9.88 -15.06 -0.15 -7.75 16 4 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 5 C 0.04 1.05 5.29 -17.43 -0.09 0.96 16 6 N -0.90 -27.39 13.97 55.49 0.78 -26.61 16 7 Si 0.88 22.47 25.10 -169.99 -4.27 18.20 16 8 H -0.28 -7.07 6.68 56.52 0.38 -6.69 16 9 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.14 3.03 4.53 -4.04 -0.02 3.02 16 12 C -0.15 -2.59 5.65 -26.73 -0.15 -2.74 16 13 C 0.12 1.94 5.67 -4.04 -0.02 1.91 16 14 N -0.72 -10.07 5.55 -63.25 -0.35 -10.42 16 15 C 0.55 8.04 7.56 -15.01 -0.11 7.93 16 16 O -0.56 -10.28 16.11 5.11 0.08 -10.19 16 17 C -0.24 -2.62 9.39 -39.27 -0.37 -2.99 16 18 C 0.02 0.24 9.40 -39.21 -0.37 -0.13 16 19 C 0.01 0.05 6.74 -83.91 -0.57 -0.51 16 20 C -0.14 -1.26 10.86 -38.98 -0.42 -1.69 16 21 C -0.21 -1.58 10.81 -39.98 -0.43 -2.01 16 22 C 0.01 0.08 11.90 -16.80 -0.20 -0.12 16 23 N -0.54 -3.90 5.94 -10.56 -0.06 -3.96 16 24 H 0.42 2.05 7.87 -40.82 -0.32 1.73 16 25 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 26 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 27 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.06 1.31 3.38 -51.93 -0.18 1.13 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.40 4.46 8.43 -40.82 -0.34 4.12 16 36 H 0.11 0.89 6.93 -52.49 -0.36 0.53 16 37 H 0.15 1.64 7.46 -52.48 -0.39 1.25 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -34.55 337.91 -7.26 -41.81 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.82 Total: 2.12 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.26 Total: -0.99 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.09 Total: -56.04 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.27 Total: 18.20 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.55 -7.26 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707369300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.666 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds