Wall clock time and date at job start Mon Mar 30 2020 01:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36937 * 119.99937 * 2 1 4 4 H 1.07998 * 120.00148 * 322.03349 * 3 2 1 5 5 C 1.38811 * 120.00365 * 142.03799 * 3 2 1 6 6 N 1.31615 * 120.00460 * 157.02079 * 5 3 2 7 7 Si 1.86812 * 119.99605 * 337.01994 * 5 3 2 8 8 H 1.48500 * 109.47062 * 95.67954 * 7 5 3 9 9 H 1.48500 * 109.46931 * 215.68219 * 7 5 3 10 10 H 1.48502 * 109.46809 * 335.67810 * 7 5 3 11 11 C 1.46501 * 120.00240 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46739 * 89.99944 * 11 2 1 13 13 C 1.53007 * 109.46688 * 180.02562 * 12 11 2 14 14 N 1.46499 * 109.46819 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99869 * 180.02562 * 14 13 12 16 16 O 1.21791 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.41518 * 120.00205 * 179.97438 * 15 14 13 18 18 C 1.35618 * 120.00156 * 180.02562 * 17 15 14 19 19 C 1.41670 * 119.99955 * 180.02562 * 18 17 15 20 20 C 1.38285 * 126.25765 * 179.68558 * 19 18 17 21 21 C 1.39788 * 107.07509 * 179.87870 * 20 19 18 22 22 C 1.35498 * 107.91256 * 0.38223 * 21 20 19 23 23 N 1.35750 * 108.90930 * 359.76448 * 22 21 20 24 24 H 0.97004 * 125.69495 * 179.97438 * 23 22 21 25 25 H 1.08996 * 109.47089 * 265.65222 * 1 2 3 26 26 H 1.09003 * 109.47191 * 25.65475 * 1 2 3 27 27 H 1.08999 * 109.47266 * 145.64784 * 1 2 3 28 28 H 0.97003 * 120.00090 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.46874 * 330.00465 * 11 2 1 30 30 H 1.08999 * 109.47433 * 210.00320 * 11 2 1 31 31 H 1.09002 * 109.47012 * 60.00606 * 12 11 2 32 32 H 1.08997 * 109.47696 * 299.99862 * 12 11 2 33 33 H 1.08994 * 109.47376 * 60.00191 * 13 12 11 34 34 H 1.09005 * 109.46671 * 299.99852 * 13 12 11 35 35 H 0.96998 * 120.00297 * 359.97438 * 14 13 12 36 36 H 1.07999 * 120.00119 * 0.27245 * 17 15 14 37 37 H 1.08007 * 119.99840 * 359.97438 * 18 17 15 38 38 H 1.07999 * 126.46238 * 0.02562 * 20 19 18 39 39 H 1.08001 * 126.04077 * 180.14776 * 21 20 19 40 40 H 1.08000 * 125.54591 * 179.73543 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7811 2.0222 -0.5754 5 6 3.3175 1.3132 0.7395 6 7 4.2043 2.2305 0.4165 7 14 3.6304 0.1824 2.1932 8 1 4.4680 -0.9638 1.7574 9 1 4.3367 0.9338 3.2617 10 1 2.3350 -0.3216 2.7160 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4418 13 6 3.2170 -3.0363 -1.4412 14 7 3.4617 -3.4595 -2.8222 15 6 4.1234 -4.6075 -3.0680 16 8 4.5184 -5.2930 -2.1420 17 6 4.3594 -5.0167 -4.4021 18 6 5.0248 -6.1722 -4.6494 19 6 5.2614 -6.5814 -5.9849 20 6 5.9276 -7.7257 -6.3838 21 6 5.9275 -7.7345 -7.7816 22 6 5.2852 -6.6192 -8.2053 23 7 4.8754 -5.9096 -7.1231 24 1 4.3915 -5.0692 -7.1474 25 1 -0.3633 -0.0779 1.0247 26 1 -0.3634 0.9264 -0.4449 27 1 -0.3634 -0.8484 -0.5799 28 1 5.0206 2.3191 0.9330 29 1 1.6084 -2.0282 0.5147 30 1 3.1499 -1.1382 0.5144 31 1 3.0416 -0.9515 -1.9559 32 1 1.5001 -1.8416 -1.9556 33 1 2.6276 -3.7955 -0.9272 34 1 4.1694 -2.9060 -0.9273 35 1 3.1468 -2.9138 -3.5597 36 1 4.0130 -4.4067 -5.2232 37 1 5.3751 -6.7800 -3.8282 38 1 6.3634 -8.4730 -5.7372 39 1 6.3657 -8.4939 -8.4123 40 1 5.1257 -6.3400 -9.2364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707369300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:34 Heat of formation + Delta-G solvation = 21.688625 kcal Electronic energy + Delta-G solvation = -20183.579102 eV Core-core repulsion = 16999.194001 eV Total energy + Delta-G solvation = -3184.385101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.04022 -40.80427 -38.23179 -36.20016 -34.84109 -33.86647 -32.39137 -32.00438 -29.56645 -28.13249 -27.08203 -24.65875 -23.16857 -22.51650 -21.88645 -21.24502 -20.57853 -18.85544 -18.60500 -17.87227 -17.38988 -16.84867 -16.56880 -15.84009 -15.39861 -15.18905 -15.15124 -14.89120 -14.81319 -14.61839 -14.44841 -14.03777 -13.39886 -13.31741 -13.22474 -12.99548 -12.90755 -12.71246 -12.68346 -12.37360 -12.18246 -11.76897 -11.40692 -11.32664 -11.10556 -10.65476 -10.12587 -9.90660 -8.78645 -8.62542 -8.23805 -5.60855 -0.35091 1.28886 1.38482 1.49140 1.55229 2.02095 2.30579 2.34335 2.39154 2.54348 3.02148 3.41080 3.87913 3.99176 4.03803 4.17499 4.36340 4.37837 4.43381 4.44606 4.51600 4.52074 4.69866 4.76168 4.76906 4.94616 5.01857 5.13048 5.13388 5.21621 5.33728 5.35550 5.36787 5.46896 5.92185 5.93139 6.05659 6.14261 6.58578 6.62683 6.97004 7.25161 7.61018 8.03492 8.95823 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.002767 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.955023 B =10116.863589 C =10249.875652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.627 5.627 3 C -0.259 4.259 4 H 0.045 0.955 5 C -0.017 4.017 6 N -0.945 5.945 7 Si 0.936 3.064 8 H -0.276 1.276 9 H -0.307 1.307 10 H -0.260 1.260 11 C 0.133 3.867 12 C -0.126 4.126 13 C 0.127 3.873 14 N -0.715 5.715 15 C 0.544 3.456 16 O -0.603 6.603 17 C -0.259 4.259 18 C 0.041 3.959 19 C -0.025 4.025 20 C -0.150 4.150 21 C -0.229 4.229 22 C 0.032 3.968 23 N -0.539 5.539 24 H 0.428 0.572 25 H 0.013 0.987 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.263 0.737 29 H 0.068 0.932 30 H 0.029 0.971 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.414 0.586 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.150 0.850 39 H 0.157 0.843 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 -19.657 -18.673 27.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.351 5.351 3 C -0.389 4.389 4 H 0.062 0.938 5 C -0.214 4.214 6 N -0.589 5.589 7 Si 0.765 3.235 8 H -0.204 1.204 9 H -0.236 1.236 10 H -0.184 1.184 11 C 0.007 3.993 12 C -0.166 4.166 13 C 0.002 3.998 14 N -0.366 5.366 15 C 0.337 3.663 16 O -0.488 6.488 17 C -0.281 4.281 18 C 0.020 3.980 19 C -0.135 4.135 20 C -0.176 4.176 21 C -0.253 4.253 22 C -0.105 4.105 23 N -0.134 5.134 24 H 0.268 0.732 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.251 0.749 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.699 -19.852 -17.951 26.774 hybrid contribution 0.228 0.733 0.712 1.047 sum -0.471 -19.119 -17.239 25.748 Atomic orbital electron populations 1.21212 0.82090 1.00505 0.98436 1.44208 1.02449 1.01376 1.87105 1.18690 1.05836 0.91641 1.22701 0.93756 1.26044 0.97040 0.98318 1.00009 1.69987 1.09268 1.38833 1.40827 0.85962 0.78228 0.78402 0.80878 1.20374 1.23593 1.18422 1.21151 0.95600 0.87386 0.95122 1.22085 1.00457 0.94407 0.99632 1.21180 0.99202 0.96154 0.83220 1.45875 1.57765 1.23822 1.09135 1.17484 0.77561 0.80727 0.90502 1.90804 1.54015 1.55682 1.48262 1.21664 1.09844 1.01152 0.95442 1.20825 0.89515 0.93775 0.93870 1.18221 1.10675 0.97953 0.86624 1.21889 1.01770 0.97325 0.96606 1.21246 1.08164 1.01213 0.94667 1.22736 1.00770 0.93662 0.93291 1.42276 1.44539 1.21303 1.05303 0.73205 0.96862 0.93900 0.91959 0.92822 0.91415 0.95261 0.92941 0.89851 0.91258 0.94030 0.74928 0.83643 0.84541 0.83232 0.82535 0.77874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.53 10.70 127.77 1.37 5.90 16 2 N -0.63 -28.98 2.47 -726.95 -1.79 -30.77 16 3 C -0.26 -14.58 9.88 84.03 0.83 -13.74 16 4 H 0.04 2.75 8.06 -2.91 -0.02 2.72 16 5 C -0.02 -1.01 5.29 84.86 0.45 -0.56 16 6 N -0.95 -59.16 13.97 21.65 0.30 -58.86 16 7 Si 0.94 46.98 25.10 68.60 1.72 48.70 16 8 H -0.28 -13.42 6.68 99.48 0.66 -12.76 16 9 H -0.31 -15.61 7.11 99.48 0.71 -14.91 16 10 H -0.26 -12.48 7.11 99.48 0.71 -11.78 16 11 C 0.13 5.45 4.53 86.38 0.39 5.84 16 12 C -0.13 -4.28 5.65 30.60 0.17 -4.11 16 13 C 0.13 4.07 5.67 86.38 0.49 4.56 16 14 N -0.72 -19.14 5.55 -472.19 -2.62 -21.75 16 15 C 0.54 15.78 7.56 85.05 0.64 16.42 16 16 O -0.60 -22.68 16.11 -4.64 -0.07 -22.75 16 17 C -0.26 -5.36 9.39 22.47 0.21 -5.15 16 18 C 0.04 0.83 9.40 22.51 0.21 1.04 16 19 C -0.03 -0.43 6.74 39.08 0.26 -0.16 16 20 C -0.15 -2.42 10.86 22.66 0.25 -2.18 16 21 C -0.23 -2.87 10.81 22.01 0.24 -2.64 16 22 C 0.03 0.30 11.90 83.45 0.99 1.29 16 23 N -0.54 -6.23 5.94 -187.34 -1.11 -7.34 16 24 H 0.43 2.88 7.87 -92.71 -0.73 2.15 16 25 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.04 1.59 8.00 -2.39 -0.02 1.57 16 27 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 28 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 30 H 0.03 1.36 3.38 -2.39 -0.01 1.35 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.41 8.49 8.43 -92.71 -0.78 7.70 16 36 H 0.15 1.94 6.93 -2.91 -0.02 1.92 16 37 H 0.14 3.08 7.46 -2.91 -0.02 3.06 16 38 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.20 0.36 8.06 -2.91 -0.02 0.34 16 Total: -1.00 -76.26 337.91 2.43 -73.83 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -0.50 Total: 12.42 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 6.51 Total: 6.52 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -5.22 Total: -118.72 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.07 Total: -22.75 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.72 Total: 48.70 kcal Total: -76.26 2.43 -73.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707369300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.522 kcal (2) G-P(sol) polarization free energy of solvation -76.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds