Wall clock time and date at job start Mon Mar 30 2020 02:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.34784 * 120.00075 * 85.00024 * 4 2 1 6 6 O 1.21686 * 119.99536 * 0.02562 * 5 4 2 7 7 C 1.46370 * 120.00233 * 180.02562 * 5 4 2 8 8 H 1.07991 * 120.00335 * 0.02562 * 7 5 4 9 9 C 1.40051 * 119.99693 * 180.02562 * 7 5 4 10 10 N 1.30664 * 120.00240 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99781 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47238 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47491 * 119.99921 * 11 9 7 14 14 H 1.48503 * 109.46732 * 239.99701 * 11 9 7 15 15 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 16 16 C 1.52997 * 109.47164 * 59.99836 * 15 2 1 17 17 C 1.52996 * 109.46975 * 180.02562 * 16 15 2 18 18 C 1.53005 * 109.47245 * 299.99595 * 17 16 15 19 19 C 1.53000 * 109.46632 * 59.99973 * 18 17 16 20 20 C 1.53002 * 109.47233 * 60.00445 * 19 18 17 21 21 C 1.52997 * 109.46817 * 299.99806 * 20 19 18 22 22 C 1.52993 * 109.47476 * 59.99598 * 17 16 15 23 23 C 1.52996 * 109.47131 * 299.99635 * 21 20 19 24 24 C 1.52996 * 109.47518 * 300.00318 * 19 18 17 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 29 29 H 0.97005 * 120.00326 * 180.02562 * 10 9 7 30 30 H 1.09000 * 109.47140 * 299.99948 * 16 15 2 31 31 H 1.09001 * 109.47375 * 59.99966 * 16 15 2 32 32 H 1.08996 * 109.47261 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.47420 * 300.00558 * 18 17 16 34 34 H 1.08992 * 109.47457 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.46968 * 180.02562 * 19 18 17 36 36 H 1.08996 * 109.47407 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47070 * 59.99626 * 20 19 18 38 38 H 1.09001 * 109.47289 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.47730 * 179.97438 * 22 17 16 40 40 H 1.09000 * 109.46925 * 60.00213 * 22 17 16 41 41 H 1.08996 * 109.47452 * 300.00000 * 23 21 20 42 42 H 1.09004 * 109.47552 * 180.02562 * 23 21 20 43 43 H 1.09001 * 109.46993 * 299.99696 * 24 19 18 44 44 H 1.09004 * 109.47298 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3572 6 8 1.8581 1.1624 -2.4117 7 6 2.6344 -0.7086 -3.5524 8 1 2.8905 -1.7566 -3.5041 9 6 2.7687 -0.0098 -4.7587 10 7 2.4584 1.2582 -4.8172 11 14 3.3900 -0.8907 -6.2842 12 1 3.6691 -2.3119 -5.9560 13 1 2.3586 -0.8218 -7.3503 14 1 4.6369 -0.2386 -6.7590 15 6 2.0400 -0.7213 1.2493 16 6 1.5300 -2.1638 1.2493 17 6 2.0395 -2.8848 2.4988 18 6 3.5695 -2.8849 2.4994 19 6 4.0795 -1.4424 2.4993 20 6 3.5691 -0.7209 3.7483 21 6 2.0391 -0.7209 3.7477 22 6 1.5291 -2.1634 3.7477 23 6 1.5296 0.0002 2.4982 24 6 3.5700 -0.7213 1.2498 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.2490 -1.6318 -1.1526 29 1 2.5510 1.7421 -5.6528 30 1 0.4400 -2.1638 1.2493 31 1 1.8933 -2.6776 0.3593 32 1 1.6765 -3.9126 2.4986 33 1 3.9332 -3.3989 1.6096 34 1 3.9325 -3.3990 3.3893 35 1 5.1695 -1.4424 2.4993 36 1 3.9320 0.3068 3.7480 37 1 3.9321 -1.2347 4.6385 38 1 1.6754 -0.2074 4.6377 39 1 1.8917 -2.6773 4.6380 40 1 0.4391 -2.1634 3.7473 41 1 1.8929 1.0278 2.4982 42 1 0.4396 0.0006 2.4980 43 1 3.9337 -1.2352 0.3600 44 1 3.9337 0.3063 1.2496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006249647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:17 Heat of formation + Delta-G solvation = -77.572359 kcal Electronic energy + Delta-G solvation = -23310.005784 eV Core-core repulsion = 20224.856747 eV Total energy + Delta-G solvation = -3085.149037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.47718 -37.45374 -34.91700 -32.59344 -32.51398 -32.41086 -31.00973 -28.76446 -26.22855 -25.83547 -25.50824 -23.01424 -21.45152 -21.18576 -20.01305 -18.78896 -17.59951 -16.92899 -15.32026 -14.89886 -14.50865 -14.35232 -14.31659 -14.20474 -13.79044 -13.61101 -13.20379 -12.93940 -12.80919 -12.49632 -12.34385 -12.24208 -12.08958 -11.58124 -11.26025 -11.06464 -10.97881 -10.84377 -10.73781 -10.66048 -10.61246 -10.53246 -10.39304 -10.26378 -10.14238 -9.47130 -9.41328 -9.34465 -8.81479 -7.52461 -7.37388 -6.13177 -4.58184 3.15103 3.23380 3.27633 4.14365 4.59705 4.60201 4.61810 4.66151 4.92213 5.17898 5.26603 5.33256 5.34052 5.37519 5.40354 5.48033 5.50113 5.52952 5.75950 5.79513 5.81740 5.87956 5.91452 5.99461 6.06674 6.06743 6.11814 6.16309 6.24072 6.28820 6.30665 6.33993 6.37965 6.42092 6.55272 6.61094 6.65769 6.75538 6.86123 7.04413 7.48080 8.02236 8.22883 8.41465 9.08179 9.64117 10.66491 10.87137 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029118 B = 0.004886 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.380995 B = 5729.117685 C = 6038.700792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.163 3.837 3 H 0.072 0.928 4 N -0.759 5.759 5 C 0.557 3.443 6 O -0.581 6.581 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.089 3.911 10 N -0.769 5.769 11 Si 0.904 3.096 12 H -0.264 1.264 13 H -0.277 1.277 14 H -0.277 1.277 15 C -0.056 4.056 16 C -0.103 4.103 17 C -0.085 4.085 18 C -0.106 4.106 19 C -0.086 4.086 20 C -0.106 4.106 21 C -0.084 4.084 22 C -0.105 4.105 23 C -0.102 4.102 24 C -0.099 4.099 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.377 0.623 29 H 0.266 0.734 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 -7.658 16.399 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.090 0.910 4 N -0.414 5.414 5 C 0.360 3.640 6 O -0.464 6.464 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.131 4.131 10 N -0.398 5.398 11 Si 0.729 3.271 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.056 4.056 16 C -0.140 4.140 17 C -0.104 4.104 18 C -0.144 4.144 19 C -0.105 4.105 20 C -0.144 4.144 21 C -0.103 4.103 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.137 4.137 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.210 0.790 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.115 -6.601 16.235 17.526 hybrid contribution 0.404 -0.877 -0.788 1.247 sum 0.519 -7.479 15.447 17.170 Atomic orbital electron populations 1.22281 0.97462 1.00941 1.01252 1.20439 0.92522 0.96827 0.84514 0.91011 1.46201 1.72963 1.12671 1.09538 1.18177 0.77710 0.86364 0.81739 1.90589 1.54782 1.16475 1.84587 1.20928 1.46874 0.97043 0.93498 0.91627 1.25683 0.93352 0.94420 0.99620 1.70032 1.35562 1.08186 1.26023 0.86379 0.78780 0.80324 0.81621 1.18846 1.20237 1.20238 1.20672 0.95268 0.95068 0.94615 1.21609 1.00380 0.95019 0.97013 1.21053 0.95476 0.98572 0.95282 1.21524 0.95300 0.96313 1.01240 1.21067 0.99085 0.94977 0.95332 1.21529 0.95303 1.00201 0.97360 1.21038 0.95485 0.95897 0.97875 1.21516 0.99988 0.95447 0.97345 1.21594 1.00382 0.98666 0.93317 1.21511 0.94592 1.00446 0.97108 0.92244 0.93284 0.93235 0.79039 0.92303 0.91712 0.91802 0.91741 0.91997 0.92633 0.91711 0.92193 0.92595 0.91761 0.92566 0.92250 0.92038 0.91653 0.91248 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 8.78 37.16 0.33 -2.55 16 2 C 0.16 3.10 1.85 -67.93 -0.13 2.97 16 3 H 0.07 1.59 7.58 -51.93 -0.39 1.20 16 4 N -0.76 -16.70 4.30 -55.22 -0.24 -16.94 16 5 C 0.56 15.75 7.71 -12.99 -0.10 15.65 16 6 O -0.58 -18.79 14.68 5.20 0.08 -18.71 16 7 C -0.55 -15.51 9.54 -35.63 -0.34 -15.85 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 10 N -0.77 -23.28 11.83 55.55 0.66 -22.63 16 11 Si 0.90 20.36 29.56 -169.99 -5.02 15.33 16 12 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 C -0.06 -0.81 0.34 -154.51 -0.05 -0.86 16 16 C -0.10 -1.35 3.95 -26.73 -0.11 -1.46 16 17 C -0.09 -0.95 3.19 -90.62 -0.29 -1.24 16 18 C -0.11 -1.18 5.19 -26.73 -0.14 -1.32 16 19 C -0.09 -1.03 3.19 -90.62 -0.29 -1.32 16 20 C -0.11 -1.16 5.19 -26.73 -0.14 -1.30 16 21 C -0.08 -0.92 3.19 -90.62 -0.29 -1.21 16 22 C -0.11 -1.09 5.19 -26.74 -0.14 -1.23 16 23 C -0.10 -1.30 4.12 -26.73 -0.11 -1.41 16 24 C -0.10 -1.46 4.32 -26.73 -0.12 -1.57 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.05 0.75 6.43 -51.93 -0.33 0.41 16 27 H 0.05 0.81 6.43 -51.93 -0.33 0.48 16 28 H 0.38 7.50 6.63 -40.82 -0.27 7.23 16 29 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 30 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 31 H 0.06 0.90 6.51 -51.93 -0.34 0.56 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.82 6.43 -51.93 -0.33 0.48 16 43 H 0.07 1.13 7.45 -51.93 -0.39 0.74 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 320.67 15.07 4.83 4.83 Total: -1.00 -32.63 320.67 -9.04 -41.67 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.34 Total: 6.73 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.00 Total: -10.29 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.42 Total: -39.57 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.08 Total: -18.71 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.63 -9.04 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006249647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.902 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds