Wall clock time and date at job start Mon Mar 30 2020 02:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47096 * 2 1 4 4 N 1.46507 * 109.47408 * 119.99859 * 2 1 3 5 5 C 1.34775 * 119.99876 * 275.00414 * 4 2 1 6 6 O 1.21683 * 120.00208 * 359.97438 * 5 4 2 7 7 C 1.46373 * 119.99634 * 179.97438 * 5 4 2 8 8 H 1.08002 * 120.00452 * 0.02562 * 7 5 4 9 9 C 1.40050 * 119.99716 * 179.71971 * 7 5 4 10 10 N 1.30674 * 120.00151 * 0.28083 * 9 7 5 11 11 Si 1.86803 * 119.99913 * 180.27503 * 9 7 5 12 12 H 1.48508 * 109.46742 * 90.00451 * 11 9 7 13 13 H 1.48501 * 109.47216 * 210.00308 * 11 9 7 14 14 H 1.48499 * 109.47135 * 330.00649 * 11 9 7 15 15 C 1.52999 * 109.47114 * 239.99844 * 2 1 3 16 16 C 1.52998 * 109.47424 * 299.99999 * 15 2 1 17 17 C 1.52999 * 109.47424 * 180.02562 * 16 15 2 18 18 C 1.53006 * 109.47148 * 59.99872 * 17 16 15 19 19 C 1.53007 * 109.46861 * 300.00372 * 18 17 16 20 20 C 1.53003 * 109.46974 * 299.99746 * 19 18 17 21 21 C 1.52995 * 109.47078 * 60.00100 * 20 19 18 22 22 C 1.52994 * 109.46920 * 299.99961 * 17 16 15 23 23 C 1.53003 * 109.47235 * 60.00069 * 21 20 19 24 24 C 1.52993 * 109.47287 * 60.00045 * 19 18 17 25 25 H 1.09004 * 109.47023 * 299.99803 * 1 2 3 26 26 H 1.08994 * 109.47214 * 59.99952 * 1 2 3 27 27 H 1.09004 * 109.46812 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99601 * 94.99753 * 4 2 1 29 29 H 0.97005 * 120.00029 * 179.97438 * 10 9 7 30 30 H 1.09003 * 109.46883 * 300.00069 * 16 15 2 31 31 H 1.09000 * 109.46935 * 59.99829 * 16 15 2 32 32 H 1.08995 * 109.47266 * 180.02562 * 17 16 15 33 33 H 1.08997 * 109.47326 * 180.02562 * 18 17 16 34 34 H 1.09003 * 109.47067 * 59.99987 * 18 17 16 35 35 H 1.09000 * 109.46732 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47066 * 300.00198 * 20 19 18 37 37 H 1.08995 * 109.46928 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.47088 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47209 * 300.00030 * 22 17 16 40 40 H 1.09004 * 109.47254 * 179.97438 * 22 17 16 41 41 H 1.09000 * 109.47525 * 179.97438 * 23 21 20 42 42 H 1.09009 * 109.46846 * 59.99513 * 23 21 20 43 43 H 1.09004 * 109.47177 * 180.02562 * 24 19 18 44 44 H 1.09003 * 109.47418 * 59.99909 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8580 1.1625 2.4117 7 6 2.6345 -0.7084 3.5524 8 1 2.8915 -1.7563 3.5039 9 6 2.7738 -0.0083 4.7573 10 7 2.4634 1.2597 4.8159 11 14 3.4032 -0.8872 6.2808 12 1 4.8835 -0.7824 6.3366 13 1 2.8165 -0.2596 7.4921 14 1 3.0099 -2.3180 6.2247 15 6 2.0400 -0.7213 -1.2492 16 6 1.5300 -2.1638 -1.2492 17 6 2.0405 -2.8852 -2.4981 18 6 3.5706 -2.8852 -2.4975 19 6 4.0805 -1.4426 -2.4975 20 6 3.5710 -0.7216 -3.7471 21 6 2.0411 -0.7217 -3.7477 22 6 1.5310 -2.1642 -3.7476 23 6 1.5304 -0.0002 -2.4988 24 6 3.5700 -0.7213 -1.2486 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2491 -1.6318 1.1526 29 1 2.5595 1.7445 5.6506 30 1 1.8934 -2.6776 -0.3592 31 1 0.4400 -2.1638 -1.2492 32 1 1.6768 -3.9127 -2.4984 33 1 3.9343 -3.3988 -3.3874 34 1 3.9336 -3.3989 -1.6073 35 1 5.1705 -1.4426 -2.4966 36 1 3.9347 -1.2355 -4.6368 37 1 3.9346 0.3059 -3.7473 38 1 1.6781 -0.2076 -4.6377 39 1 0.4410 -2.1642 -3.7481 40 1 1.8951 -2.6779 -4.6374 41 1 0.4405 0.0001 -2.4995 42 1 1.8938 1.0275 -2.4988 43 1 3.9329 0.3066 -1.2488 44 1 3.9330 -1.2349 -0.3583 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006795385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:20 Heat of formation + Delta-G solvation = -77.551301 kcal Electronic energy + Delta-G solvation = -23310.214682 eV Core-core repulsion = 20225.066558 eV Total energy + Delta-G solvation = -3085.148124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.47659 -37.45359 -34.91643 -32.59253 -32.51384 -32.40848 -31.00934 -28.76478 -26.22675 -25.83537 -25.50749 -23.01379 -21.45160 -21.18535 -20.01230 -18.78864 -17.59852 -16.92774 -15.31519 -14.89831 -14.50844 -14.35312 -14.31547 -14.20756 -13.79201 -13.61194 -13.20368 -12.93954 -12.80751 -12.49686 -12.33935 -12.24079 -12.08968 -11.57839 -11.26409 -11.07189 -10.96246 -10.84193 -10.73630 -10.66037 -10.61589 -10.53218 -10.38639 -10.26727 -10.16486 -9.47136 -9.41321 -9.34460 -8.80537 -7.52620 -7.37374 -6.12920 -4.58106 3.16366 3.23235 3.26496 4.14458 4.59700 4.60236 4.61819 4.66234 4.92205 5.17878 5.26545 5.33238 5.34061 5.37582 5.40349 5.48065 5.50107 5.52948 5.75952 5.79509 5.81747 5.87999 5.91463 5.99493 6.06667 6.06680 6.11838 6.16327 6.24066 6.28812 6.30684 6.34001 6.37971 6.42078 6.55292 6.61071 6.65784 6.75525 6.86147 7.04439 7.48025 8.02150 8.22765 8.41308 9.08164 9.64202 10.66672 10.87239 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029092 B = 0.004888 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.241453 B = 5726.541750 C = 6037.189379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.163 3.837 3 H 0.072 0.928 4 N -0.759 5.759 5 C 0.557 3.443 6 O -0.581 6.581 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.089 3.911 10 N -0.769 5.769 11 Si 0.904 3.096 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.266 1.266 15 C -0.056 4.056 16 C -0.103 4.103 17 C -0.085 4.085 18 C -0.106 4.106 19 C -0.086 4.086 20 C -0.106 4.106 21 C -0.084 4.084 22 C -0.105 4.105 23 C -0.102 4.102 24 C -0.099 4.099 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.377 0.623 29 H 0.267 0.733 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 -7.652 -16.391 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.090 0.910 4 N -0.414 5.414 5 C 0.360 3.640 6 O -0.464 6.464 7 C -0.584 4.584 8 H 0.083 0.917 9 C -0.131 4.131 10 N -0.398 5.398 11 Si 0.729 3.271 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.190 1.190 15 C -0.056 4.056 16 C -0.140 4.140 17 C -0.104 4.104 18 C -0.144 4.144 19 C -0.105 4.105 20 C -0.144 4.144 21 C -0.103 4.103 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.137 4.137 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.210 0.790 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.115 -6.592 -16.225 17.513 hybrid contribution 0.422 -0.884 0.781 1.252 sum 0.537 -7.476 -15.444 17.166 Atomic orbital electron populations 1.22280 0.97463 1.00941 1.01252 1.20439 0.92523 0.96828 0.84515 0.91011 1.46202 1.72963 1.12671 1.09535 1.18164 0.77721 0.86354 0.81725 1.90588 1.54793 1.16472 1.84584 1.20895 1.46916 0.96992 0.93586 0.91677 1.25682 0.93366 0.94424 0.99593 1.70026 1.35463 1.08151 1.26167 0.86431 0.79337 0.80249 0.81056 1.19819 1.20526 1.18987 1.20674 0.95274 0.95071 0.94613 1.21610 1.00377 0.95016 0.97020 1.21054 0.95474 0.98575 0.95280 1.21526 0.95294 0.96316 1.01235 1.21068 0.99085 0.94980 0.95332 1.21527 0.95303 1.00207 0.97357 1.21039 0.95478 0.95899 0.97879 1.21519 0.99988 0.95445 0.97346 1.21596 1.00379 0.98665 0.93318 1.21515 0.94593 1.00440 0.97113 0.92243 0.93285 0.93236 0.79040 0.92251 0.91809 0.91706 0.91738 0.92631 0.91991 0.91711 0.92600 0.92195 0.91761 0.92241 0.92566 0.91654 0.92040 0.92215 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 8.78 37.16 0.33 -2.55 16 2 C 0.16 3.10 1.85 -67.93 -0.13 2.97 16 3 H 0.07 1.59 7.58 -51.93 -0.39 1.20 16 4 N -0.76 -16.71 4.30 -55.22 -0.24 -16.94 16 5 C 0.56 15.76 7.71 -12.99 -0.10 15.66 16 6 O -0.58 -18.79 14.68 5.20 0.08 -18.71 16 7 C -0.55 -15.52 9.54 -35.63 -0.34 -15.86 16 8 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.09 2.50 5.50 -17.36 -0.10 2.40 16 10 N -0.77 -23.29 11.83 55.55 0.66 -22.63 16 11 Si 0.90 20.36 29.56 -169.99 -5.02 15.34 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 15 C -0.06 -0.81 0.34 -154.50 -0.05 -0.86 16 16 C -0.10 -1.35 3.95 -26.73 -0.11 -1.46 16 17 C -0.09 -0.95 3.19 -90.62 -0.29 -1.24 16 18 C -0.11 -1.18 5.19 -26.72 -0.14 -1.32 16 19 C -0.09 -1.03 3.19 -90.62 -0.29 -1.32 16 20 C -0.11 -1.16 5.19 -26.73 -0.14 -1.30 16 21 C -0.08 -0.92 3.19 -90.62 -0.29 -1.21 16 22 C -0.11 -1.09 5.19 -26.73 -0.14 -1.23 16 23 C -0.10 -1.30 4.12 -26.73 -0.11 -1.41 16 24 C -0.10 -1.46 4.31 -26.73 -0.12 -1.57 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.05 0.75 6.43 -51.93 -0.33 0.41 16 27 H 0.05 0.81 6.43 -51.93 -0.33 0.48 16 28 H 0.38 7.50 6.63 -40.82 -0.27 7.23 16 29 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 30 H 0.06 0.89 6.51 -51.93 -0.34 0.56 16 31 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.82 6.43 -51.93 -0.33 0.48 16 42 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.07 1.13 7.44 -51.93 -0.39 0.75 16 LS Contribution 320.67 15.07 4.83 4.83 Total: -1.00 -32.61 320.67 -9.04 -41.65 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.34 Total: 6.76 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.00 Total: -10.29 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.42 Total: -39.58 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.08 Total: -18.71 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.61 -9.04 -41.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006795385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.903 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds