Wall clock time and date at job start Mon Mar 30 2020 02:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47096 * 2 1 4 4 N 1.46507 * 109.47408 * 119.99859 * 2 1 3 5 5 C 1.34775 * 119.99876 * 275.00414 * 4 2 1 6 6 O 1.21683 * 120.00208 * 359.97438 * 5 4 2 7 7 C 1.46373 * 119.99634 * 179.97438 * 5 4 2 8 8 H 1.08002 * 120.00452 * 0.02562 * 7 5 4 9 9 C 1.40050 * 119.99716 * 179.71971 * 7 5 4 10 10 N 1.30674 * 120.00151 * 0.28083 * 9 7 5 11 11 Si 1.86803 * 119.99913 * 180.27503 * 9 7 5 12 12 H 1.48508 * 109.46742 * 90.00451 * 11 9 7 13 13 H 1.48501 * 109.47216 * 210.00308 * 11 9 7 14 14 H 1.48499 * 109.47135 * 330.00649 * 11 9 7 15 15 C 1.52999 * 109.47114 * 239.99844 * 2 1 3 16 16 C 1.52998 * 109.47424 * 299.99999 * 15 2 1 17 17 C 1.52999 * 109.47424 * 180.02562 * 16 15 2 18 18 C 1.53006 * 109.47148 * 59.99872 * 17 16 15 19 19 C 1.53007 * 109.46861 * 300.00372 * 18 17 16 20 20 C 1.53003 * 109.46974 * 299.99746 * 19 18 17 21 21 C 1.52995 * 109.47078 * 60.00100 * 20 19 18 22 22 C 1.52994 * 109.46920 * 299.99961 * 17 16 15 23 23 C 1.53003 * 109.47235 * 60.00069 * 21 20 19 24 24 C 1.52993 * 109.47287 * 60.00045 * 19 18 17 25 25 H 1.09004 * 109.47023 * 299.99803 * 1 2 3 26 26 H 1.08994 * 109.47214 * 59.99952 * 1 2 3 27 27 H 1.09004 * 109.46812 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99601 * 94.99753 * 4 2 1 29 29 H 0.97005 * 120.00029 * 179.97438 * 10 9 7 30 30 H 1.09003 * 109.46883 * 300.00069 * 16 15 2 31 31 H 1.09000 * 109.46935 * 59.99829 * 16 15 2 32 32 H 1.08995 * 109.47266 * 180.02562 * 17 16 15 33 33 H 1.08997 * 109.47326 * 180.02562 * 18 17 16 34 34 H 1.09003 * 109.47067 * 59.99987 * 18 17 16 35 35 H 1.09000 * 109.46732 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47066 * 300.00198 * 20 19 18 37 37 H 1.08995 * 109.46928 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.47088 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47209 * 300.00030 * 22 17 16 40 40 H 1.09004 * 109.47254 * 179.97438 * 22 17 16 41 41 H 1.09000 * 109.47525 * 179.97438 * 23 21 20 42 42 H 1.09009 * 109.46846 * 59.99513 * 23 21 20 43 43 H 1.09004 * 109.47177 * 180.02562 * 24 19 18 44 44 H 1.09003 * 109.47418 * 59.99909 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8580 1.1625 2.4117 7 6 2.6345 -0.7084 3.5524 8 1 2.8915 -1.7563 3.5039 9 6 2.7738 -0.0083 4.7573 10 7 2.4634 1.2597 4.8159 11 14 3.4032 -0.8872 6.2808 12 1 4.8835 -0.7824 6.3366 13 1 2.8165 -0.2596 7.4921 14 1 3.0099 -2.3180 6.2247 15 6 2.0400 -0.7213 -1.2492 16 6 1.5300 -2.1638 -1.2492 17 6 2.0405 -2.8852 -2.4981 18 6 3.5706 -2.8852 -2.4975 19 6 4.0805 -1.4426 -2.4975 20 6 3.5710 -0.7216 -3.7471 21 6 2.0411 -0.7217 -3.7477 22 6 1.5310 -2.1642 -3.7476 23 6 1.5304 -0.0002 -2.4988 24 6 3.5700 -0.7213 -1.2486 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2491 -1.6318 1.1526 29 1 2.5595 1.7445 5.6506 30 1 1.8934 -2.6776 -0.3592 31 1 0.4400 -2.1638 -1.2492 32 1 1.6768 -3.9127 -2.4984 33 1 3.9343 -3.3988 -3.3874 34 1 3.9336 -3.3989 -1.6073 35 1 5.1705 -1.4426 -2.4966 36 1 3.9347 -1.2355 -4.6368 37 1 3.9346 0.3059 -3.7473 38 1 1.6781 -0.2076 -4.6377 39 1 0.4410 -2.1642 -3.7481 40 1 1.8951 -2.6779 -4.6374 41 1 0.4405 0.0001 -2.4995 42 1 1.8938 1.0275 -2.4988 43 1 3.9329 0.3066 -1.2488 44 1 3.9330 -1.2349 -0.3583 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006795385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:19 Heat of formation + Delta-G solvation = -97.636792 kcal Electronic energy + Delta-G solvation = -23311.085654 eV Core-core repulsion = 20225.066558 eV Total energy + Delta-G solvation = -3086.019096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54793 -39.40315 -36.60679 -34.58871 -33.57841 -33.46106 -32.69752 -30.29577 -28.24472 -26.81618 -26.62539 -24.51212 -22.50578 -22.17138 -21.68984 -20.38848 -19.21785 -18.29452 -17.43607 -16.41180 -16.05518 -15.53944 -15.38946 -15.33199 -15.11844 -14.99168 -14.45587 -14.37855 -14.15361 -13.95488 -13.71262 -13.42533 -13.23567 -13.13216 -13.00460 -12.73568 -12.60804 -12.57085 -12.12164 -12.02816 -11.71755 -11.70445 -11.60765 -11.53064 -11.46376 -10.93184 -10.55661 -10.43563 -10.41587 -9.80260 -9.36093 -8.27453 -6.83880 1.38252 1.40170 1.55051 2.24330 2.49933 3.17104 3.56160 3.59643 3.66744 3.69773 4.11438 4.23446 4.25714 4.36540 4.37646 4.38385 4.45928 4.49721 4.52637 4.58000 4.66275 4.76325 4.82933 4.89126 4.93428 4.94625 5.10918 5.14924 5.19996 5.21410 5.24653 5.25137 5.25602 5.29267 5.31890 5.37063 5.42840 5.60147 5.64726 5.72183 5.74232 5.91410 6.27239 6.39604 6.88144 7.61324 8.53688 8.71108 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029092 B = 0.004888 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.241453 B = 5726.541750 C = 6037.189379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.161 3.839 3 H 0.029 0.971 4 N -0.744 5.744 5 C 0.541 3.459 6 O -0.633 6.633 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.029 3.971 10 N -0.823 5.823 11 Si 0.996 3.004 12 H -0.262 1.262 13 H -0.273 1.273 14 H -0.249 1.249 15 C -0.045 4.045 16 C -0.102 4.102 17 C -0.082 4.082 18 C -0.105 4.105 19 C -0.083 4.083 20 C -0.105 4.105 21 C -0.081 4.081 22 C -0.102 4.102 23 C -0.102 4.102 24 C -0.099 4.099 25 H 0.015 0.985 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.389 0.611 29 H 0.273 0.727 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.035 0.965 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.527 -10.510 -18.140 20.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.055 3.945 3 H 0.047 0.953 4 N -0.398 5.398 5 C 0.344 3.656 6 O -0.520 6.520 7 C -0.613 4.613 8 H 0.101 0.899 9 C -0.185 4.185 10 N -0.453 5.453 11 Si 0.815 3.185 12 H -0.187 1.187 13 H -0.198 1.198 14 H -0.172 1.172 15 C -0.045 4.045 16 C -0.139 4.139 17 C -0.100 4.100 18 C -0.142 4.142 19 C -0.101 4.101 20 C -0.143 4.143 21 C -0.099 4.099 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.137 4.137 25 H 0.035 0.965 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.224 0.776 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.296 -9.495 -18.027 20.377 hybrid contribution 0.366 0.061 1.291 1.343 sum 0.662 -9.434 -16.737 19.224 Atomic orbital electron populations 1.22175 0.96291 1.01922 1.00537 1.20608 0.93408 0.95037 0.85460 0.95306 1.45871 1.71780 1.13027 1.09086 1.18541 0.77479 0.85990 0.83550 1.90540 1.57028 1.18649 1.85823 1.21432 1.47400 0.98045 0.94378 0.89855 1.26946 0.92837 0.95102 1.03643 1.70202 1.36870 1.10539 1.27699 0.85056 0.78841 0.79222 0.75378 1.18670 1.19775 1.17241 1.20560 0.94997 0.96022 0.92947 1.21605 1.00576 0.93615 0.98131 1.21059 0.95351 0.99241 0.94366 1.21532 0.95358 0.95312 1.02006 1.21050 0.99307 0.95631 0.94150 1.21537 0.95415 0.99965 0.97362 1.21052 0.95327 0.96553 0.97005 1.21528 1.00495 0.94521 0.97438 1.21609 1.00773 0.98118 0.93486 1.21487 0.94895 0.99218 0.98126 0.96543 0.90364 0.91269 0.77603 0.91723 0.93100 0.91274 0.90057 0.90346 0.92754 0.91424 0.90297 0.92906 0.89923 0.91501 0.90459 0.90940 0.93337 0.94616 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 8.78 71.98 0.63 -4.91 16 2 C 0.16 6.41 1.85 44.99 0.08 6.49 16 3 H 0.03 1.39 7.58 -2.39 -0.02 1.37 16 4 N -0.74 -34.40 4.30 -446.83 -1.92 -36.32 16 5 C 0.54 32.28 7.71 86.36 0.67 32.95 16 6 O -0.63 -43.70 14.68 -4.29 -0.06 -43.77 16 7 C -0.58 -33.60 9.54 24.83 0.24 -33.36 16 8 H 0.08 4.38 7.85 -2.91 -0.02 4.36 16 9 C 0.03 1.69 5.50 85.30 0.47 2.15 16 10 N -0.82 -51.81 11.83 21.84 0.26 -51.56 16 11 Si 1.00 42.05 29.56 68.60 2.03 44.07 16 12 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 13 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 14 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 15 C -0.04 -1.30 0.34 -52.18 -0.02 -1.32 16 16 C -0.10 -2.52 3.95 30.59 0.12 -2.40 16 17 C -0.08 -1.54 3.19 -10.79 -0.03 -1.58 16 18 C -0.10 -2.01 5.19 30.60 0.16 -1.85 16 19 C -0.08 -1.85 3.19 -10.79 -0.03 -1.89 16 20 C -0.11 -2.01 5.19 30.59 0.16 -1.85 16 21 C -0.08 -1.50 3.19 -10.79 -0.03 -1.54 16 22 C -0.10 -1.65 5.19 30.59 0.16 -1.49 16 23 C -0.10 -2.49 4.12 30.60 0.13 -2.37 16 24 C -0.10 -3.01 4.31 30.59 0.13 -2.88 16 25 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 2.38 6.43 -2.39 -0.02 2.36 16 27 H 0.07 2.24 6.43 -2.39 -0.02 2.23 16 28 H 0.39 15.99 6.63 -92.71 -0.61 15.37 16 29 H 0.27 15.56 8.29 -92.70 -0.77 14.79 16 30 H 0.05 1.38 6.51 -2.39 -0.02 1.36 16 31 H 0.07 1.66 6.43 -2.39 -0.02 1.64 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.66 6.43 -2.39 -0.02 1.65 16 42 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.05 1.57 7.44 -2.39 -0.02 1.55 16 Total: -1.00 -75.75 320.67 3.49 -72.26 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.37 Total: 31.14 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 2.82 Total: -15.84 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -1.66 Total: -87.87 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.06 Total: -43.77 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -75.75 3.49 -72.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006795385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.376 kcal (2) G-P(sol) polarization free energy of solvation -75.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds