Wall clock time and date at job start Mon Mar 30 2020 02:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47014 * 2 1 4 4 C 1.53004 * 109.46977 * 119.99410 * 2 1 3 5 5 C 1.53006 * 109.46758 * 65.00288 * 4 2 1 6 6 C 1.52999 * 109.47007 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.47014 * 305.00307 * 6 5 4 8 8 C 1.53003 * 109.46998 * 184.99973 * 6 5 4 9 9 N 1.46498 * 109.46941 * 65.00190 * 6 5 4 10 10 C 1.39677 * 119.99713 * 204.99862 * 9 6 5 11 11 C 1.38994 * 120.04102 * 0.02562 * 10 9 6 12 12 C 1.38150 * 120.06611 * 180.02562 * 11 10 9 13 13 C 1.38181 * 120.14103 * 359.97438 * 12 11 10 14 14 C 1.38920 * 120.07488 * 0.03930 * 13 12 11 15 15 O 1.35750 * 120.02899 * 179.97438 * 14 13 12 16 16 C 1.34833 * 116.99905 * 174.49189 * 15 14 13 17 17 H 1.07995 * 120.00081 * 5.08170 * 16 15 14 18 18 C 1.38650 * 119.99674 * 185.08173 * 16 15 14 19 19 N 1.31556 * 120.00470 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99816 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47008 * 59.99985 * 20 18 16 22 22 H 1.48496 * 109.47452 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47168 * 299.99977 * 20 18 16 24 24 C 1.38751 * 120.03663 * 179.72423 * 10 9 6 25 25 H 1.08992 * 109.47256 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47215 * 300.00366 * 1 2 3 27 27 H 1.09005 * 109.46746 * 60.00276 * 1 2 3 28 28 H 1.08997 * 109.47215 * 239.99634 * 2 1 3 29 29 H 1.08996 * 109.46634 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46828 * 299.99457 * 3 2 1 31 31 H 1.08997 * 109.46977 * 60.00050 * 3 2 1 32 32 H 1.09001 * 109.47114 * 184.99800 * 4 2 1 33 33 H 1.08996 * 109.47469 * 305.00694 * 4 2 1 34 34 H 1.09002 * 109.47167 * 300.00123 * 5 4 2 35 35 H 1.09005 * 109.46885 * 59.99825 * 5 4 2 36 36 H 1.09004 * 109.47014 * 300.00292 * 8 6 5 37 37 H 1.08995 * 109.46896 * 60.00155 * 8 6 5 38 38 H 1.08997 * 109.46778 * 180.02562 * 8 6 5 39 39 H 0.97002 * 120.00451 * 24.99725 * 9 6 5 40 40 H 1.08000 * 119.97014 * 0.02562 * 11 10 9 41 41 H 1.07999 * 119.93255 * 179.97438 * 12 11 10 42 42 H 1.07996 * 119.96374 * 180.02562 * 13 12 11 43 43 H 0.96999 * 120.00158 * 180.02562 * 19 18 16 44 44 H 1.08002 * 120.07242 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6352 -2.1954 1.1881 6 6 2.1457 -2.9167 2.4371 7 1 3.2210 -2.7647 2.5304 8 6 1.8505 -4.4133 2.3181 9 7 1.4718 -2.3787 3.6214 10 6 2.0861 -2.4629 4.8730 11 6 3.3369 -3.0566 4.9957 12 6 3.9446 -3.1407 6.2335 13 6 3.3119 -2.6348 7.3530 14 6 2.0616 -2.0405 7.2371 15 8 1.4406 -1.5443 8.3375 16 6 0.2839 -0.8801 8.1404 17 1 -0.1504 -0.8333 7.1527 18 6 -0.3479 -0.2572 9.2058 19 7 0.1808 -0.3146 10.4091 20 14 -1.9501 0.6636 8.9327 21 1 -2.9752 -0.2723 8.4050 22 1 -2.4179 1.2361 10.2205 23 1 -1.7306 1.7597 7.9551 24 6 1.4511 -1.9485 5.9943 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1263 -0.6443 1.2953 33 1 1.6053 -0.2617 2.1370 34 1 0.5489 -2.2723 1.1421 35 1 2.0699 -2.6549 0.3003 36 1 0.7752 -4.5652 2.2248 37 1 2.3519 -4.8136 1.4370 38 1 2.2138 -4.9271 3.2082 39 1 0.5991 -1.9639 3.5364 40 1 3.8341 -3.4525 4.1226 41 1 4.9163 -3.6027 6.3265 42 1 3.7898 -2.7017 8.3191 43 1 -0.2615 0.1209 11.1545 44 1 0.4815 -1.4820 5.9009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037069587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:32 Heat of formation + Delta-G solvation = -29.835706 kcal Electronic energy + Delta-G solvation = -21401.226670 eV Core-core repulsion = 18318.147650 eV Total energy + Delta-G solvation = -3083.079020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.17764 -37.99635 -36.62251 -35.09294 -32.26568 -31.75727 -29.32510 -28.54093 -27.62028 -27.33485 -25.20500 -23.94230 -21.93742 -21.38517 -20.06409 -19.92263 -17.79161 -17.38205 -15.78416 -15.61075 -15.05865 -14.92770 -14.43185 -14.29357 -13.99185 -13.65785 -13.50779 -13.34640 -13.05219 -12.78414 -12.68993 -12.36996 -12.27272 -11.96189 -11.76800 -11.59499 -11.52199 -11.37159 -11.10159 -10.91129 -10.73659 -10.70751 -10.64065 -10.44966 -10.43245 -10.29175 -9.34693 -9.31738 -8.71148 -7.29431 -6.68911 -6.36868 -3.96031 2.44470 2.63887 3.16314 3.18162 3.20175 3.85274 4.03010 4.50484 4.72501 4.74000 4.77699 5.02410 5.14917 5.16688 5.22441 5.40406 5.43409 5.46461 5.55327 5.57840 5.65986 5.67021 5.73261 5.79183 5.79860 5.93261 5.96860 5.99412 6.05978 6.07729 6.23496 6.30105 6.33353 6.34714 6.45234 6.72367 6.73739 7.11381 7.20326 7.45401 7.55064 7.74356 8.09690 8.11038 8.29696 9.09305 9.82774 10.81593 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.004599 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.693768 B = 6087.169263 C = 7482.061886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.115 4.115 5 C -0.126 4.126 6 C 0.152 3.848 7 H 0.076 0.924 8 C -0.168 4.168 9 N -0.747 5.747 10 C 0.253 3.747 11 C -0.280 4.280 12 C -0.041 4.041 13 C -0.239 4.239 14 C 0.190 3.810 15 O -0.180 6.180 16 C -0.388 4.388 17 H 0.090 0.910 18 C 0.038 3.962 19 N -0.866 5.866 20 Si 0.938 3.062 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.304 4.304 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.392 0.608 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.269 0.731 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 -1.928 -19.863 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.152 4.152 5 C -0.164 4.164 6 C 0.046 3.954 7 H 0.094 0.906 8 C -0.227 4.227 9 N -0.378 5.378 10 C 0.151 3.849 11 C -0.303 4.303 12 C -0.060 4.060 13 C -0.259 4.259 14 C 0.135 3.865 15 O -0.083 6.083 16 C -0.465 4.465 17 H 0.107 0.893 18 C -0.165 4.165 19 N -0.501 5.501 20 Si 0.763 3.237 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.327 4.327 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.226 0.774 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.079 0.921 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.371 -1.922 -19.504 19.741 hybrid contribution -1.206 0.598 -0.215 1.363 sum 1.166 -1.324 -19.719 19.798 Atomic orbital electron populations 1.21902 0.95416 1.01747 1.01642 1.21126 0.95825 0.96150 0.98396 1.21846 1.00908 0.96154 1.01673 1.21648 1.00945 0.94756 0.97867 1.21928 1.01537 0.95660 0.97275 1.20790 0.97524 0.92213 0.84843 0.90585 1.22299 1.01751 0.96870 1.01789 1.44635 1.21947 1.67162 1.04031 1.17459 0.91205 0.91900 0.84317 1.20095 0.97391 1.15370 0.97442 1.20376 0.97615 0.96188 0.91785 1.20025 0.95803 1.11210 0.98889 1.19071 0.90730 0.90296 0.86371 1.83986 1.35167 1.61748 1.27377 1.21238 0.97563 1.31137 0.96539 0.89296 1.25250 0.99486 0.97276 0.94517 1.70030 1.38921 1.41669 0.99484 0.85826 0.80452 0.79443 0.77941 1.19630 1.20326 1.19639 1.20499 1.04110 1.16340 0.91798 0.92523 0.92552 0.93116 0.91605 0.92787 0.93002 0.92548 0.92037 0.91273 0.91465 0.91132 0.92764 0.92570 0.91926 0.77371 0.87808 0.87347 0.87042 0.92115 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.95 37.16 0.33 -0.95 16 2 C -0.10 -0.84 2.92 -90.61 -0.26 -1.11 16 3 C -0.15 -1.30 9.19 37.16 0.34 -0.95 16 4 C -0.11 -1.15 4.57 -26.73 -0.12 -1.27 16 5 C -0.13 -1.19 4.51 -26.73 -0.12 -1.31 16 6 C 0.15 1.78 2.27 -67.93 -0.15 1.62 16 7 H 0.08 0.94 6.48 -51.93 -0.34 0.60 16 8 C -0.17 -1.86 9.43 37.16 0.35 -1.51 16 9 N -0.75 -10.96 4.70 -52.19 -0.25 -11.20 16 10 C 0.25 4.74 6.63 -83.81 -0.56 4.18 16 11 C -0.28 -5.04 8.85 -39.33 -0.35 -5.39 16 12 C -0.04 -0.76 10.03 -39.63 -0.40 -1.16 16 13 C -0.24 -5.30 9.99 -39.35 -0.39 -5.70 16 14 C 0.19 4.76 6.65 -39.13 -0.26 4.50 16 15 O -0.18 -5.28 9.76 0.04 0.00 -5.28 16 16 C -0.39 -11.11 9.49 30.88 0.29 -10.81 16 17 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.87 -25.89 13.67 55.48 0.76 -25.13 16 20 Si 0.94 20.92 29.55 -169.99 -5.02 15.89 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 24 C -0.30 -6.80 9.01 -39.20 -0.35 -7.15 16 25 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 34 H 0.07 0.62 6.57 -51.93 -0.34 0.28 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.80 7.71 -51.93 -0.40 0.40 16 39 H 0.39 5.49 8.61 -40.82 -0.35 5.13 16 40 H 0.10 1.62 6.11 -52.49 -0.32 1.30 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.12 2.76 5.63 -52.49 -0.30 2.47 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -30.70 353.45 -8.20 -38.91 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.27 Total: 7.51 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -1.75 Total: -26.02 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.51 Total: -36.33 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: 0.00 Total: -5.28 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.70 -8.20 -38.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.070 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds