Wall clock time and date at job start Mon Mar 30 2020 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47014 * 2 1 4 4 C 1.53004 * 109.46977 * 119.99410 * 2 1 3 5 5 C 1.53006 * 109.46758 * 65.00288 * 4 2 1 6 6 C 1.52999 * 109.47007 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.47014 * 305.00307 * 6 5 4 8 8 C 1.53003 * 109.46998 * 184.99973 * 6 5 4 9 9 N 1.46498 * 109.46941 * 65.00190 * 6 5 4 10 10 C 1.39677 * 119.99713 * 204.99862 * 9 6 5 11 11 C 1.38994 * 120.04102 * 0.02562 * 10 9 6 12 12 C 1.38150 * 120.06611 * 180.02562 * 11 10 9 13 13 C 1.38181 * 120.14103 * 359.97438 * 12 11 10 14 14 C 1.38920 * 120.07488 * 0.03930 * 13 12 11 15 15 O 1.35750 * 120.02899 * 179.97438 * 14 13 12 16 16 C 1.34833 * 116.99905 * 174.49189 * 15 14 13 17 17 H 1.07995 * 120.00081 * 5.08170 * 16 15 14 18 18 C 1.38650 * 119.99674 * 185.08173 * 16 15 14 19 19 N 1.31556 * 120.00470 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99816 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47008 * 59.99985 * 20 18 16 22 22 H 1.48496 * 109.47452 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47168 * 299.99977 * 20 18 16 24 24 C 1.38751 * 120.03663 * 179.72423 * 10 9 6 25 25 H 1.08992 * 109.47256 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47215 * 300.00366 * 1 2 3 27 27 H 1.09005 * 109.46746 * 60.00276 * 1 2 3 28 28 H 1.08997 * 109.47215 * 239.99634 * 2 1 3 29 29 H 1.08996 * 109.46634 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46828 * 299.99457 * 3 2 1 31 31 H 1.08997 * 109.46977 * 60.00050 * 3 2 1 32 32 H 1.09001 * 109.47114 * 184.99800 * 4 2 1 33 33 H 1.08996 * 109.47469 * 305.00694 * 4 2 1 34 34 H 1.09002 * 109.47167 * 300.00123 * 5 4 2 35 35 H 1.09005 * 109.46885 * 59.99825 * 5 4 2 36 36 H 1.09004 * 109.47014 * 300.00292 * 8 6 5 37 37 H 1.08995 * 109.46896 * 60.00155 * 8 6 5 38 38 H 1.08997 * 109.46778 * 180.02562 * 8 6 5 39 39 H 0.97002 * 120.00451 * 24.99725 * 9 6 5 40 40 H 1.08000 * 119.97014 * 0.02562 * 11 10 9 41 41 H 1.07999 * 119.93255 * 179.97438 * 12 11 10 42 42 H 1.07996 * 119.96374 * 180.02562 * 13 12 11 43 43 H 0.96999 * 120.00158 * 180.02562 * 19 18 16 44 44 H 1.08002 * 120.07242 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6352 -2.1954 1.1881 6 6 2.1457 -2.9167 2.4371 7 1 3.2210 -2.7647 2.5304 8 6 1.8505 -4.4133 2.3181 9 7 1.4718 -2.3787 3.6214 10 6 2.0861 -2.4629 4.8730 11 6 3.3369 -3.0566 4.9957 12 6 3.9446 -3.1407 6.2335 13 6 3.3119 -2.6348 7.3530 14 6 2.0616 -2.0405 7.2371 15 8 1.4406 -1.5443 8.3375 16 6 0.2839 -0.8801 8.1404 17 1 -0.1504 -0.8333 7.1527 18 6 -0.3479 -0.2572 9.2058 19 7 0.1808 -0.3146 10.4091 20 14 -1.9501 0.6636 8.9327 21 1 -2.9752 -0.2723 8.4050 22 1 -2.4179 1.2361 10.2205 23 1 -1.7306 1.7597 7.9551 24 6 1.4511 -1.9485 5.9943 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1263 -0.6443 1.2953 33 1 1.6053 -0.2617 2.1370 34 1 0.5489 -2.2723 1.1421 35 1 2.0699 -2.6549 0.3003 36 1 0.7752 -4.5652 2.2248 37 1 2.3519 -4.8136 1.4370 38 1 2.2138 -4.9271 3.2082 39 1 0.5991 -1.9639 3.5364 40 1 3.8341 -3.4525 4.1226 41 1 4.9163 -3.6027 6.3265 42 1 3.7898 -2.7017 8.3191 43 1 -0.2615 0.1209 11.1545 44 1 0.4815 -1.4820 5.9009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037069587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:31 Heat of formation + Delta-G solvation = -47.046679 kcal Electronic energy + Delta-G solvation = -21401.972994 eV Core-core repulsion = 18318.147650 eV Total energy + Delta-G solvation = -3083.825344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.81137 -39.31946 -37.92245 -36.29958 -34.24945 -33.07779 -30.63594 -29.78948 -29.09969 -28.01487 -27.22580 -24.79717 -23.50008 -22.83624 -21.28758 -20.76791 -19.62208 -19.07979 -17.15605 -16.94921 -16.56215 -16.11183 -15.83645 -15.58529 -15.47148 -15.14076 -14.71988 -14.49052 -14.33074 -14.13767 -13.89662 -13.50762 -13.48643 -13.07050 -13.01488 -12.91799 -12.64082 -12.45920 -12.41635 -12.21663 -12.12433 -12.06208 -11.78801 -11.49344 -11.33723 -11.29875 -11.21534 -10.88907 -10.56540 -9.08424 -8.44547 -8.17407 -6.12887 0.78969 0.95388 1.33358 1.45310 1.49959 2.18733 2.61473 2.90566 3.28964 3.61133 3.71094 3.98744 4.01920 4.17549 4.26061 4.34644 4.37503 4.46785 4.59074 4.63359 4.71965 4.76311 4.82438 4.85257 4.87968 4.93463 5.00027 5.01363 5.07919 5.15552 5.16070 5.18446 5.26259 5.27091 5.34138 5.43863 5.51188 5.53583 5.58444 5.77652 5.83207 6.06763 6.14833 6.67323 6.92856 7.00888 7.84686 8.79012 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.004599 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.693768 B = 6087.169263 C = 7482.061886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.113 4.113 5 C -0.117 4.117 6 C 0.147 3.853 7 H 0.077 0.923 8 C -0.164 4.164 9 N -0.736 5.736 10 C 0.262 3.738 11 C -0.264 4.264 12 C -0.027 4.027 13 C -0.265 4.265 14 C 0.153 3.847 15 O -0.234 6.234 16 C -0.411 4.411 17 H 0.098 0.902 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.017 2.983 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.259 1.259 24 C -0.319 4.319 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.396 0.604 40 H 0.141 0.859 41 H 0.150 0.850 42 H 0.104 0.896 43 H 0.272 0.728 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.448 -2.726 -23.792 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.151 4.151 5 C -0.155 4.155 6 C 0.043 3.957 7 H 0.095 0.905 8 C -0.223 4.223 9 N -0.365 5.365 10 C 0.157 3.843 11 C -0.287 4.287 12 C -0.046 4.046 13 C -0.286 4.286 14 C 0.102 3.898 15 O -0.140 6.140 16 C -0.487 4.487 17 H 0.115 0.885 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.836 3.164 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.183 1.183 24 C -0.343 4.343 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.230 0.770 40 H 0.159 0.841 41 H 0.168 0.832 42 H 0.122 0.878 43 H 0.081 0.919 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.588 -2.749 -23.521 23.822 hybrid contribution -1.074 0.704 0.720 1.472 sum 1.514 -2.044 -22.801 22.942 Atomic orbital electron populations 1.21903 0.95316 1.02066 1.01415 1.21107 0.95853 0.95962 0.98204 1.21862 1.01026 0.96343 1.01501 1.21614 1.00589 0.95312 0.97549 1.21883 1.01916 0.94865 0.96823 1.21073 0.97343 0.93054 0.84248 0.90471 1.22256 1.02057 0.95723 1.02255 1.44832 1.21997 1.66126 1.03572 1.17534 0.91404 0.90491 0.84861 1.20556 0.96560 1.13185 0.98393 1.20823 0.98741 0.94337 0.90666 1.20241 0.95484 1.12687 1.00193 1.19641 0.92077 0.91458 0.86669 1.83945 1.36252 1.64037 1.29773 1.21735 0.98001 1.31615 0.97342 0.88472 1.26566 1.03589 0.98007 0.93897 1.70184 1.41362 1.43849 1.00694 0.84680 0.75211 0.78145 0.78353 1.18193 1.19471 1.18329 1.20509 1.04056 1.17429 0.92314 0.91921 0.93902 0.92278 0.90151 0.92632 0.92010 0.93923 0.92331 0.93687 0.91033 0.88660 0.92808 0.89810 0.93642 0.76989 0.84117 0.83209 0.87767 0.91907 0.87097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.95 71.98 0.64 -1.58 16 2 C -0.09 -1.38 2.92 -10.79 -0.03 -1.41 16 3 C -0.15 -2.36 9.19 71.98 0.66 -1.70 16 4 C -0.11 -1.98 4.57 30.60 0.14 -1.84 16 5 C -0.12 -1.76 4.51 30.60 0.14 -1.62 16 6 C 0.15 2.90 2.27 44.99 0.10 3.00 16 7 H 0.08 1.56 6.48 -2.39 -0.02 1.54 16 8 C -0.16 -2.97 9.43 71.98 0.68 -2.29 16 9 N -0.74 -20.07 4.70 -319.02 -1.50 -21.57 16 10 C 0.26 9.47 6.63 38.20 0.25 9.72 16 11 C -0.26 -8.71 8.85 22.43 0.20 -8.51 16 12 C -0.03 -0.96 10.03 22.24 0.22 -0.74 16 13 C -0.27 -12.08 9.99 22.42 0.22 -11.85 16 14 C 0.15 8.05 6.65 22.56 0.15 8.20 16 15 O -0.23 -14.72 9.76 -22.78 -0.22 -14.95 16 16 C -0.41 -24.84 9.49 67.92 0.64 -24.19 16 17 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 18 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 19 N -0.92 -58.18 13.67 21.61 0.30 -57.89 16 20 Si 1.02 44.08 29.55 68.60 2.03 46.10 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 24 C -0.32 -14.66 9.01 22.52 0.20 -14.46 16 25 H 0.06 0.85 6.57 -2.39 -0.02 0.83 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.04 1.01 7.75 -2.39 -0.02 0.99 16 34 H 0.07 1.06 6.57 -2.39 -0.02 1.05 16 35 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.04 0.99 7.71 -2.39 -0.02 0.97 16 39 H 0.40 10.50 8.61 -92.71 -0.80 9.70 16 40 H 0.14 3.66 6.11 -2.91 -0.02 3.65 16 41 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 42 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.11 5.23 5.63 -2.91 -0.02 5.22 16 Total: -1.00 -72.03 353.45 5.47 -66.55 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.18 Total: 31.95 kcal Atomic # 6 Polarization: -54.89 SS G_CDS: 4.69 Total: -50.20 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -1.20 Total: -79.46 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.22 Total: -14.95 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -72.03 5.47 -66.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.507 kcal (2) G-P(sol) polarization free energy of solvation -72.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds