Wall clock time and date at job start Mon Mar 30 2020 02:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47166 * 2 1 4 4 N 1.46895 * 109.46818 * 120.00024 * 2 1 3 5 5 C 1.46905 * 110.99929 * 274.99926 * 4 2 1 6 6 C 1.53000 * 109.47309 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47149 * 59.99903 * 6 5 4 8 8 C 1.52993 * 109.47208 * 180.02562 * 6 5 4 9 9 C 1.53003 * 109.46881 * 299.99846 * 6 5 4 10 10 C 1.50701 * 109.46917 * 239.99553 * 2 1 3 11 11 C 1.38298 * 119.93294 * 279.72786 * 10 2 1 12 12 C 1.38098 * 120.07012 * 179.72910 * 11 10 2 13 13 C 1.38886 * 119.92938 * 0.54426 * 12 11 10 14 14 O 1.35749 * 120.07258 * 179.74839 * 13 12 11 15 15 C 1.34829 * 117.00288 * 174.44321 * 14 13 12 16 16 H 1.07998 * 119.99524 * 5.05711 * 15 14 13 17 17 C 1.38649 * 119.99983 * 185.05551 * 15 14 13 18 18 N 1.31559 * 120.00036 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99959 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47260 * 89.99946 * 19 17 15 21 21 H 1.48508 * 109.46894 * 209.99827 * 19 17 15 22 22 H 1.48502 * 109.47290 * 329.99947 * 19 17 15 23 23 C 1.38881 * 119.85850 * 359.72674 * 13 12 11 24 24 C 1.38095 * 119.93269 * 0.02562 * 23 13 12 25 25 H 1.09008 * 109.46942 * 60.00209 * 1 2 3 26 26 H 1.08996 * 109.47166 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47352 * 300.00559 * 1 2 3 28 28 H 1.00898 * 111.00200 * 38.95009 * 4 2 1 29 29 H 1.09004 * 109.46826 * 299.99946 * 5 4 2 30 30 H 1.08997 * 109.47355 * 60.00093 * 5 4 2 31 31 H 1.08994 * 109.47539 * 60.00090 * 7 6 5 32 32 H 1.09002 * 109.47198 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.46837 * 300.00176 * 7 6 5 34 34 H 1.08997 * 109.47444 * 59.99768 * 8 6 5 35 35 H 1.08997 * 109.47467 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.47278 * 299.99861 * 8 6 5 37 37 H 1.08998 * 109.47261 * 60.00235 * 9 6 5 38 38 H 1.08998 * 109.46793 * 179.97438 * 9 6 5 39 39 H 1.08997 * 109.47055 * 299.99794 * 9 6 5 40 40 H 1.08005 * 119.96623 * 0.02562 * 11 10 2 41 41 H 1.07993 * 120.03852 * 180.27260 * 12 11 10 42 42 H 0.96995 * 119.99906 * 180.02562 * 18 17 15 43 43 H 1.08000 * 120.03338 * 179.97438 * 23 13 12 44 44 H 1.08000 * 119.96490 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 3.9934 -1.0850 3.2853 8 6 2.6609 0.4201 4.7694 9 6 1.6470 -1.6891 3.8954 10 6 2.0323 -0.7105 -1.2304 11 6 2.0714 -2.0926 -1.2616 12 6 2.5259 -2.7467 -2.3897 13 6 2.9547 -2.0149 -3.4896 14 8 3.4068 -2.6549 -4.5981 15 6 3.6986 -1.8907 -5.6699 16 1 3.6474 -0.8145 -5.5957 17 6 4.0643 -2.4865 -6.8672 18 7 4.3486 -1.7409 -7.9132 19 14 4.1521 -4.3480 -6.9956 20 1 2.8319 -4.8776 -7.4219 21 1 5.1836 -4.7272 -7.9945 22 1 4.5107 -4.9191 -5.6725 23 6 2.9194 -0.6270 -3.4530 24 6 2.4590 0.0211 -2.3238 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.4495 -1.4979 1.4100 29 1 2.7589 1.0462 2.1182 30 1 1.0871 0.6164 2.5525 31 1 4.6695 -0.2613 3.0564 32 1 4.3592 -1.6236 4.1595 33 1 3.9468 -1.7640 2.4339 34 1 1.6653 0.8132 4.9751 35 1 3.0264 -0.1181 5.6439 36 1 3.3367 1.2442 4.5409 37 1 1.6005 -2.3682 3.0441 38 1 2.0133 -2.2275 4.7695 39 1 0.6516 -1.2957 4.1013 40 1 1.7416 -2.6611 -0.4045 41 1 2.5521 -3.8260 -2.4151 42 1 4.6041 -2.1577 -8.7509 43 1 3.2525 -0.0552 -4.3065 44 1 2.4310 1.1003 -2.2950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040492901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:00 Heat of formation + Delta-G solvation = -20.733345 kcal Electronic energy + Delta-G solvation = -21373.222918 eV Core-core repulsion = 18290.538606 eV Total energy + Delta-G solvation = -3082.684312 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.37333 -38.47172 -36.96832 -34.79406 -32.33471 -30.45570 -30.04155 -28.05340 -27.51184 -27.26554 -25.37011 -24.92292 -22.43451 -21.89214 -19.99191 -18.94341 -17.77955 -17.24668 -15.99863 -15.37892 -15.04084 -14.61507 -14.46856 -14.01075 -13.84811 -13.75181 -13.68467 -13.43056 -13.01137 -12.74066 -12.61356 -12.34390 -12.29988 -12.23016 -12.05461 -11.77370 -11.73716 -11.43882 -11.14188 -10.97551 -10.86218 -10.77693 -10.63621 -10.56887 -10.36195 -10.09614 -9.33807 -8.82541 -8.31691 -8.17153 -7.22807 -6.38075 -4.04434 2.20363 2.29325 3.24338 3.27842 3.43100 4.16142 4.26906 4.55045 4.63190 4.69248 4.84182 4.91616 5.10559 5.13746 5.24355 5.32591 5.36790 5.39861 5.47314 5.56308 5.61086 5.65321 5.67909 5.74376 5.78476 5.83619 5.85072 5.93417 5.98049 6.07352 6.14685 6.19824 6.22973 6.38853 6.42687 6.63198 6.82677 7.00086 7.17958 7.34601 7.42120 7.43879 7.67369 7.84790 8.08568 8.97711 9.61465 10.69880 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032080 B = 0.003315 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.600351 B = 8445.453999 C = 8721.065978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.139 3.861 3 H 0.075 0.925 4 N -0.677 5.677 5 C 0.069 3.931 6 C -0.068 4.068 7 C -0.133 4.133 8 C -0.141 4.141 9 C -0.144 4.144 10 C -0.156 4.156 11 C -0.056 4.056 12 C -0.194 4.194 13 C 0.158 3.842 14 O -0.220 6.220 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.062 3.938 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.220 4.220 24 C -0.070 4.070 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.338 0.662 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.279 0.721 43 H 0.131 0.869 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 2.789 21.646 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.029 3.971 3 H 0.094 0.906 4 N -0.308 5.308 5 C -0.060 4.060 6 C -0.069 4.069 7 C -0.190 4.190 8 C -0.199 4.199 9 C -0.202 4.202 10 C -0.158 4.158 11 C -0.074 4.074 12 C -0.213 4.213 13 C 0.106 3.894 14 O -0.125 6.125 15 C -0.464 4.464 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.521 5.521 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.239 4.239 24 C -0.089 4.089 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.157 0.843 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.089 0.911 43 H 0.149 0.851 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.202 2.636 21.197 21.985 hybrid contribution -0.858 -0.442 -0.109 0.971 sum -6.060 2.194 21.088 22.051 Atomic orbital electron populations 1.22488 0.97296 1.02078 1.01582 1.20204 0.91790 0.96811 0.88270 0.90635 1.60641 1.57645 1.09438 1.03112 1.22020 0.98776 0.95235 0.89990 1.20569 0.96586 0.95447 0.94271 1.21748 0.94625 1.01174 1.01443 1.21854 1.01462 0.99117 0.97443 1.21901 0.98620 0.98053 1.01614 1.19150 1.08031 0.93542 0.95029 1.20297 0.97902 0.93450 0.95758 1.20202 1.08490 0.99178 0.93453 1.19125 0.91783 0.90945 0.87508 1.83571 1.72885 1.36620 1.19473 1.20761 1.46649 0.92154 0.86813 0.87700 1.24458 0.95766 1.00167 0.93657 1.69648 1.44613 1.36147 1.01649 0.86184 0.78210 0.83777 0.78743 1.19946 1.20845 1.18355 1.21222 1.08300 0.94327 1.00054 1.20596 0.97267 0.98335 0.92688 0.91850 0.92454 0.93392 0.84251 0.91174 0.95639 0.93051 0.93737 0.91040 0.92993 0.92618 0.92635 0.92118 0.92685 0.93149 0.87270 0.86777 0.91126 0.85109 0.87571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.14 37.16 0.34 -1.62 16 2 C 0.14 1.76 2.79 -68.86 -0.19 1.57 16 3 H 0.08 0.95 7.66 -51.93 -0.40 0.56 16 4 N -0.68 -7.66 4.91 -107.95 -0.53 -8.19 16 5 C 0.07 0.67 4.44 -3.82 -0.02 0.66 16 6 C -0.07 -0.59 0.85 -154.51 -0.13 -0.72 16 7 C -0.13 -1.29 8.32 37.16 0.31 -0.98 16 8 C -0.14 -1.06 8.47 37.15 0.31 -0.74 16 9 C -0.14 -1.15 8.14 37.16 0.30 -0.85 16 10 C -0.16 -2.55 4.96 -104.58 -0.52 -3.06 16 11 C -0.06 -0.94 9.32 -39.61 -0.37 -1.31 16 12 C -0.19 -3.89 9.99 -39.39 -0.39 -4.28 16 13 C 0.16 3.70 6.65 -39.10 -0.26 3.44 16 14 O -0.22 -5.90 8.59 0.06 0.00 -5.90 16 15 C -0.39 -11.08 9.95 30.88 0.31 -10.77 16 16 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.77 13.96 55.48 0.77 -25.00 16 19 Si 0.91 21.94 28.62 -169.99 -4.86 17.07 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.22 -4.79 9.17 -39.40 -0.36 -5.15 16 24 C -0.07 -1.27 9.66 -39.61 -0.38 -1.66 16 25 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 26 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 27 H 0.05 0.47 7.45 -51.93 -0.39 0.08 16 28 H 0.34 3.56 5.85 -39.29 -0.23 3.33 16 29 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 30 H 0.03 0.24 7.44 -51.93 -0.39 -0.15 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.81 7.60 -51.93 -0.39 0.41 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.11 1.56 7.23 -52.48 -0.38 1.18 16 41 H 0.11 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.13 3.01 5.64 -52.49 -0.30 2.71 16 44 H 0.11 1.67 8.03 -52.49 -0.42 1.25 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -29.03 351.33 -7.77 -36.80 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.30 Total: 3.74 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -1.15 Total: -23.82 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.25 Total: -33.19 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: 0.00 Total: -5.90 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.86 Total: 17.07 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.03 -7.77 -36.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040492901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.064 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds