Wall clock time and date at job start Mon Mar 30 2020 01:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47286 * 2 1 4 4 H 1.08999 * 109.46997 * 305.00570 * 3 2 1 5 5 C 1.53002 * 109.46801 * 65.00137 * 3 2 1 6 6 C 1.53000 * 109.47376 * 185.00185 * 3 2 1 7 7 H 1.09007 * 109.46791 * 300.00285 * 6 3 2 8 8 C 1.53005 * 109.47014 * 59.99871 * 6 3 2 9 9 N 1.46894 * 109.47253 * 180.02562 * 6 3 2 10 10 C 1.46898 * 111.00061 * 155.00076 * 9 6 3 11 11 C 1.50699 * 109.47073 * 179.97438 * 10 9 6 12 12 C 1.38303 * 119.93178 * 269.72378 * 11 10 9 13 13 C 1.38102 * 120.07016 * 179.72113 * 12 11 10 14 14 C 1.38879 * 119.93059 * 0.57851 * 13 12 11 15 15 O 1.35744 * 120.07041 * 179.67768 * 14 13 12 16 16 C 1.34829 * 117.00210 * 174.48132 * 15 14 13 17 17 H 1.08001 * 120.00035 * 5.06208 * 16 15 14 18 18 C 1.38651 * 120.00042 * 185.05551 * 16 15 14 19 19 N 1.31556 * 120.00335 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99924 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46945 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46879 * 119.99954 * 20 18 16 23 23 H 1.48501 * 109.47228 * 240.00395 * 20 18 16 24 24 C 1.38881 * 119.85801 * 359.69538 * 14 13 12 25 25 C 1.38099 * 119.93237 * 0.02562 * 24 14 13 26 26 H 1.09000 * 109.47331 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47025 * 299.99967 * 1 2 3 28 28 H 1.09001 * 109.47030 * 59.99878 * 1 2 3 29 29 H 1.09001 * 109.47279 * 240.00486 * 2 1 3 30 30 H 1.08995 * 109.47328 * 120.00442 * 2 1 3 31 31 H 1.09000 * 109.46948 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47346 * 300.00050 * 5 3 2 33 33 H 1.09002 * 109.46748 * 59.99970 * 5 3 2 34 34 H 1.08996 * 109.46469 * 179.97438 * 8 6 3 35 35 H 1.09000 * 109.47302 * 300.00391 * 8 6 3 36 36 H 1.09002 * 109.46575 * 60.00405 * 8 6 3 37 37 H 1.00906 * 110.99471 * 278.95124 * 9 6 3 38 38 H 1.08994 * 109.46980 * 299.99646 * 10 9 6 39 39 H 1.08997 * 109.47138 * 59.99947 * 10 9 6 40 40 H 1.08001 * 119.96427 * 359.97438 * 12 11 10 41 41 H 1.07999 * 120.03168 * 180.27326 * 13 12 11 42 42 H 0.96995 * 120.00392 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.02763 * 179.97438 * 24 14 13 44 44 H 1.07998 * 119.96282 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4444 -0.1258 7 1 3.9995 0.9053 0.7161 8 6 3.9696 0.7603 -1.4332 9 7 4.0546 2.8293 -0.1251 10 6 5.4451 2.8958 0.3439 11 6 5.9118 4.3286 0.3302 12 6 6.5172 4.8464 -0.8004 13 6 6.9408 6.1607 -0.8181 14 6 6.7693 6.9592 0.3051 15 8 7.1906 8.2496 0.2930 16 6 6.8918 9.0012 1.3718 17 1 6.4133 8.5501 2.2285 18 6 7.1989 10.3532 1.3813 19 7 7.7814 10.9029 0.3377 20 14 6.7855 11.3944 2.8762 21 1 6.1395 10.5442 3.9083 22 1 8.0316 11.9829 3.4294 23 1 5.8572 12.4836 2.4795 24 6 6.1662 6.4347 1.4408 25 6 5.7395 5.1213 1.4502 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.9990 3.1540 1.3076 32 1 0.5490 2.1252 1.3970 33 1 2.0699 1.5874 2.1492 34 1 5.0558 0.7621 -1.5229 35 1 3.6062 -0.2673 -1.4332 36 1 3.5349 1.2994 -2.2749 37 1 3.9609 3.2463 -1.0392 38 1 5.5052 2.5034 1.3590 39 1 6.0792 2.3012 -0.3137 40 1 6.6551 4.2234 -1.6718 41 1 7.4095 6.5657 -1.7029 42 1 7.9967 11.8486 0.3445 43 1 6.0318 7.0531 2.3160 44 1 5.2708 4.7127 2.3333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042553696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:43 Heat of formation + Delta-G solvation = -26.395891 kcal Electronic energy + Delta-G solvation = -20981.112712 eV Core-core repulsion = 17898.182853 eV Total energy + Delta-G solvation = -3082.929859 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.13260 -38.35914 -36.66499 -34.55332 -32.31500 -30.99684 -30.13008 -29.33389 -28.33566 -25.54933 -24.56185 -24.04988 -21.97817 -21.75765 -20.54486 -19.76744 -17.95518 -16.93044 -15.64604 -15.39682 -15.12571 -14.71027 -14.52184 -14.36519 -14.03300 -13.59651 -13.49056 -13.28206 -13.20938 -12.83148 -12.70328 -12.59340 -12.08959 -11.95238 -11.78865 -11.67793 -11.52798 -11.30355 -11.25832 -10.90197 -10.74658 -10.63342 -10.60084 -10.55072 -10.40952 -10.24856 -9.30123 -8.82099 -8.24550 -8.13163 -7.15231 -6.43518 -4.02149 2.25057 2.32515 3.13432 3.15222 3.20754 3.98224 4.19961 4.62784 4.67058 4.80416 4.99026 5.02082 5.12027 5.18746 5.25021 5.30059 5.41321 5.41690 5.47899 5.50612 5.61839 5.70390 5.75004 5.79737 5.85341 5.87258 5.89615 5.91754 5.96336 6.10337 6.13050 6.24282 6.33117 6.45991 6.50831 6.73239 6.94201 7.06788 7.20245 7.25590 7.43889 7.46917 7.56251 7.86182 8.02049 9.02507 9.73047 10.74724 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028518 B = 0.003039 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.615844 B = 9210.988238 C = 9852.213192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.079 4.079 4 H 0.067 0.933 5 C -0.139 4.139 6 C 0.086 3.914 7 H 0.073 0.927 8 C -0.185 4.185 9 N -0.677 5.677 10 C 0.119 3.881 11 C -0.183 4.183 12 C -0.069 4.069 13 C -0.194 4.194 14 C 0.155 3.845 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.235 4.235 25 C -0.049 4.049 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.341 0.659 38 H 0.068 0.932 39 H 0.026 0.974 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.269 0.731 43 H 0.126 0.874 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.834 -19.073 -0.390 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.098 4.098 4 H 0.085 0.915 5 C -0.196 4.196 6 C -0.025 4.025 7 H 0.091 0.909 8 C -0.244 4.244 9 N -0.308 5.308 10 C -0.009 4.009 11 C -0.185 4.185 12 C -0.088 4.088 13 C -0.213 4.213 14 C 0.101 3.899 15 O -0.083 6.083 16 C -0.467 4.467 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.254 4.254 25 C -0.068 4.068 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.159 0.841 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.124 0.876 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.144 0.856 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.878 -18.551 0.010 21.017 hybrid contribution 0.293 0.176 -0.050 0.346 sum -9.585 -18.375 -0.040 20.724 Atomic orbital electron populations 1.21809 0.96032 1.01170 1.01985 1.21664 0.95816 0.96832 1.01754 1.21110 0.94281 0.95250 0.99127 0.91455 1.21739 0.99778 1.02043 0.96044 1.21606 0.95082 0.89159 0.96605 0.90857 1.22583 1.01353 1.01538 0.98931 1.60646 1.21082 1.16347 1.32691 1.20626 0.87369 0.93468 0.99447 1.19131 1.08056 0.95602 0.95676 1.20473 0.97567 0.94128 0.96624 1.20165 1.09356 0.94012 0.97787 1.19395 0.91359 0.86081 0.93021 1.83974 1.66128 1.16403 1.41752 1.21379 1.41064 0.90359 0.93865 0.89009 1.25289 0.96544 0.96031 0.98702 1.70046 1.38394 1.12666 1.28773 0.85650 0.78415 0.79567 0.79819 1.19073 1.20179 1.20143 1.21170 1.08028 0.96491 0.99746 1.20564 0.96445 0.92963 0.96815 0.93180 0.92421 0.92890 0.91984 0.92239 0.90988 0.93578 0.93596 0.92845 0.92015 0.92509 0.84066 0.91386 0.95575 0.87584 0.86691 0.92103 0.85644 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.12 -0.97 5.19 -26.73 -0.14 -1.11 16 3 C -0.08 -0.74 2.16 -90.62 -0.20 -0.93 16 4 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.14 -1.42 8.79 37.16 0.33 -1.09 16 6 C 0.09 0.85 2.17 -67.71 -0.15 0.70 16 7 H 0.07 0.76 7.80 -51.92 -0.40 0.35 16 8 C -0.19 -1.63 8.82 37.16 0.33 -1.30 16 9 N -0.68 -8.25 5.47 -108.00 -0.59 -8.84 16 10 C 0.12 1.59 5.61 -4.98 -0.03 1.56 16 11 C -0.18 -3.10 5.40 -104.58 -0.56 -3.67 16 12 C -0.07 -1.22 9.69 -39.61 -0.38 -1.61 16 13 C -0.19 -4.12 9.99 -39.39 -0.39 -4.51 16 14 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 15 O -0.18 -5.17 9.76 0.07 0.00 -5.16 16 16 C -0.39 -11.01 9.49 30.88 0.29 -10.72 16 17 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.51 13.67 55.48 0.76 -24.76 16 20 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 24 C -0.24 -5.17 9.17 -39.39 -0.36 -5.53 16 25 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.46 6.17 -51.93 -0.32 0.14 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.88 7.60 -51.93 -0.39 0.48 16 32 H 0.05 0.43 6.56 -51.93 -0.34 0.09 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.49 7.45 -51.93 -0.39 0.10 16 35 H 0.06 0.48 6.32 -51.93 -0.33 0.15 16 36 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 37 H 0.34 4.23 8.46 -39.29 -0.33 3.90 16 38 H 0.07 0.89 8.00 -51.93 -0.42 0.47 16 39 H 0.03 0.33 7.37 -51.93 -0.38 -0.05 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 44 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -29.52 352.23 -8.35 -37.87 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.16 Total: 5.70 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -1.65 Total: -25.78 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.17 Total: -33.59 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.52 -8.35 -37.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042553696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.472 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds