Wall clock time and date at job start Mon Mar 30 2020 01:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47259 * 2 1 4 4 H 1.09003 * 109.47354 * 54.99785 * 3 2 1 5 5 C 1.53000 * 109.46928 * 294.99474 * 3 2 1 6 6 C 1.53000 * 109.46973 * 174.99788 * 3 2 1 7 7 H 1.09003 * 109.47084 * 59.99831 * 6 3 2 8 8 C 1.53003 * 109.47395 * 299.99636 * 6 3 2 9 9 N 1.46903 * 109.46916 * 179.97438 * 6 3 2 10 10 C 1.46911 * 110.99737 * 205.00159 * 9 6 3 11 11 C 1.50699 * 109.46783 * 180.02562 * 10 9 6 12 12 C 1.38309 * 119.92854 * 269.72615 * 11 10 9 13 13 C 1.38102 * 120.06648 * 179.72921 * 12 11 10 14 14 C 1.38875 * 119.92872 * 0.56419 * 13 12 11 15 15 O 1.35754 * 120.06574 * 179.68733 * 14 13 12 16 16 C 1.34832 * 117.00175 * 174.48817 * 15 14 13 17 17 H 1.08004 * 119.99633 * 5.05378 * 16 15 14 18 18 C 1.38651 * 120.00125 * 185.05310 * 16 15 14 19 19 N 1.31556 * 120.00059 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99858 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47323 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47101 * 120.00540 * 20 18 16 23 23 H 1.48502 * 109.47279 * 239.99721 * 20 18 16 24 24 C 1.38876 * 119.86680 * 359.70402 * 14 13 12 25 25 C 1.38105 * 119.92760 * 0.02562 * 24 14 13 26 26 H 1.08999 * 109.47255 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47198 * 300.00510 * 1 2 3 28 28 H 1.09000 * 109.46629 * 60.00147 * 1 2 3 29 29 H 1.09000 * 109.46629 * 119.99853 * 2 1 3 30 30 H 1.09003 * 109.47047 * 239.99206 * 2 1 3 31 31 H 1.09005 * 109.47175 * 60.00735 * 5 3 2 32 32 H 1.09007 * 109.46962 * 179.97438 * 5 3 2 33 33 H 1.08994 * 109.47491 * 300.00014 * 5 3 2 34 34 H 1.09007 * 109.46796 * 60.00401 * 8 6 3 35 35 H 1.08994 * 109.47036 * 179.97438 * 8 6 3 36 36 H 1.08994 * 109.47298 * 300.00441 * 8 6 3 37 37 H 1.00902 * 110.99988 * 81.04713 * 9 6 3 38 38 H 1.09001 * 109.46709 * 299.99807 * 10 9 6 39 39 H 1.08999 * 109.47298 * 59.99996 * 10 9 6 40 40 H 1.07998 * 119.96393 * 359.97438 * 12 11 10 41 41 H 1.07999 * 120.02923 * 180.27108 * 13 12 11 42 42 H 0.97001 * 120.00297 * 179.97438 * 19 18 16 43 43 H 1.07993 * 120.03688 * 179.97438 * 24 14 13 44 44 H 1.08001 * 119.95949 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6354 2.1264 -1.3074 6 6 3.5649 1.4442 0.1258 7 1 3.9995 0.9051 -0.7160 8 6 3.9696 0.7602 1.4332 9 7 4.0546 2.8292 0.1252 10 6 5.4452 2.8956 -0.3440 11 6 5.9120 4.3284 -0.3302 12 6 5.7444 5.1195 -1.4523 13 6 6.1660 6.4346 -1.4409 14 6 6.7695 6.9589 -0.3054 15 8 7.1907 8.2494 -0.2934 16 6 7.6631 8.7283 0.8752 17 1 7.7700 8.0701 1.7248 18 6 8.0116 10.0657 0.9861 19 7 7.8819 10.8673 -0.0489 20 14 8.6653 10.7293 2.6052 21 1 8.7156 9.6328 3.6054 22 1 10.0310 11.2755 2.4010 23 1 7.7695 11.8072 3.0962 24 6 6.9414 6.1604 0.8178 25 6 6.5125 4.8477 0.8021 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5140 -0.8899 31 1 0.5490 2.1252 -1.3970 32 1 1.9984 3.1543 -1.3072 33 1 2.0700 1.5874 -2.1492 34 1 3.6063 -0.2675 1.4332 35 1 5.0559 0.7611 1.5225 36 1 3.5350 1.2992 2.2749 37 1 3.9610 3.2462 1.0392 38 1 6.0792 2.3009 0.3137 39 1 5.5054 2.5032 -1.3591 40 1 5.2797 4.7096 -2.3368 41 1 6.0309 7.0530 -2.3159 42 1 8.1253 11.8031 0.0287 43 1 7.4107 6.5652 1.7022 44 1 6.6464 4.2261 1.6751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042553705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:51 Heat of formation + Delta-G solvation = -26.443432 kcal Electronic energy + Delta-G solvation = -20970.418997 eV Core-core repulsion = 17887.487077 eV Total energy + Delta-G solvation = -3082.931920 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.13372 -38.35877 -36.66383 -34.55444 -32.31872 -30.99754 -30.12808 -29.33789 -28.33763 -25.54123 -24.56017 -24.06847 -22.00270 -21.73353 -20.52548 -19.77976 -17.95221 -16.97705 -15.57124 -15.38080 -15.12856 -14.73613 -14.51547 -14.45512 -13.93845 -13.62106 -13.53186 -13.34257 -13.27964 -12.79188 -12.67238 -12.37723 -12.14512 -11.95073 -11.88976 -11.68274 -11.55086 -11.29951 -11.26433 -10.89930 -10.70845 -10.63630 -10.62990 -10.54719 -10.41980 -10.24787 -9.31007 -8.82727 -8.25016 -8.13092 -7.15275 -6.43907 -4.02660 2.25608 2.31824 3.12511 3.14090 3.19623 3.97415 4.19899 4.62719 4.66903 4.80319 4.98868 5.02036 5.11958 5.18796 5.25708 5.31656 5.39363 5.41806 5.47771 5.50438 5.61833 5.69568 5.74663 5.79065 5.85128 5.87343 5.88998 5.91501 5.97511 6.10203 6.12788 6.24475 6.32991 6.45888 6.50292 6.74140 6.93385 7.06322 7.18319 7.30446 7.39851 7.46261 7.56258 7.86291 8.01434 9.01951 9.72848 10.74329 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032200 B = 0.002912 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.353976 B = 9612.322842 C = 9811.946272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.079 4.079 4 H 0.067 0.933 5 C -0.139 4.139 6 C 0.086 3.914 7 H 0.073 0.927 8 C -0.185 4.185 9 N -0.677 5.677 10 C 0.119 3.881 11 C -0.183 4.183 12 C -0.052 4.052 13 C -0.194 4.194 14 C 0.155 3.845 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.234 4.234 25 C -0.066 4.066 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.341 0.659 38 H 0.026 0.974 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.269 0.731 43 H 0.125 0.875 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.476 -19.202 1.444 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.098 4.098 4 H 0.085 0.915 5 C -0.196 4.196 6 C -0.025 4.025 7 H 0.092 0.908 8 C -0.244 4.244 9 N -0.308 5.308 10 C -0.009 4.009 11 C -0.184 4.184 12 C -0.071 4.071 13 C -0.214 4.214 14 C 0.102 3.898 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.254 4.254 25 C -0.085 4.085 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.159 0.841 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.079 0.921 43 H 0.143 0.857 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.675 -18.624 0.590 20.996 hybrid contribution 0.863 -0.027 1.713 1.918 sum -8.812 -18.651 2.303 20.756 Atomic orbital electron populations 1.21809 0.96031 1.01171 1.01985 1.21664 0.95816 0.96833 1.01756 1.21108 0.94275 0.95253 0.99134 0.91461 1.21739 0.99779 1.02037 0.96039 1.21607 0.95084 0.89161 0.96599 0.90844 1.22583 1.01355 1.01538 0.98943 1.60656 1.21065 1.16339 1.32702 1.20631 0.87373 0.93470 0.99452 1.19134 1.08139 0.95613 0.95541 1.20463 0.97098 0.92531 0.97013 1.20227 1.06927 0.96038 0.98160 1.19401 0.91333 0.85793 0.93312 1.83981 1.68867 1.20574 1.34816 1.21365 1.42862 0.94045 0.88440 0.89076 1.25286 0.97207 0.94906 0.99176 1.70048 1.44761 1.05472 1.29526 0.85652 0.78538 0.79151 0.80098 1.19144 1.20170 1.20138 1.21114 1.09401 0.94754 1.00112 1.20581 0.96976 0.94576 0.96372 0.93181 0.92893 0.92416 0.91991 0.92233 0.93585 0.90981 0.93579 0.92018 0.92854 0.92511 0.84068 0.95610 0.91338 0.87098 0.86612 0.92092 0.85706 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.76 16 2 C -0.12 -0.97 5.19 -26.73 -0.14 -1.11 16 3 C -0.08 -0.73 2.16 -90.62 -0.20 -0.93 16 4 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.14 -1.40 8.79 37.16 0.33 -1.07 16 6 C 0.09 0.85 2.17 -67.71 -0.15 0.70 16 7 H 0.07 0.75 7.80 -51.93 -0.40 0.35 16 8 C -0.19 -1.65 8.82 37.16 0.33 -1.32 16 9 N -0.68 -8.25 5.47 -107.98 -0.59 -8.84 16 10 C 0.12 1.59 5.61 -4.97 -0.03 1.56 16 11 C -0.18 -3.10 5.40 -104.58 -0.56 -3.66 16 12 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 13 C -0.19 -4.16 9.99 -39.40 -0.39 -4.56 16 14 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 15 O -0.18 -5.16 9.76 0.03 0.00 -5.16 16 16 C -0.39 -11.00 9.49 30.88 0.29 -10.71 16 17 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.48 13.67 55.48 0.76 -24.73 16 20 Si 0.94 20.64 29.55 -169.99 -5.02 15.61 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 C -0.23 -5.12 9.17 -39.39 -0.36 -5.48 16 25 C -0.07 -1.21 9.69 -39.61 -0.38 -1.59 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 29 H 0.06 0.46 6.17 -51.93 -0.32 0.14 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.42 6.57 -51.93 -0.34 0.08 16 32 H 0.07 0.87 7.60 -51.92 -0.39 0.47 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.48 6.32 -51.92 -0.33 0.15 16 35 H 0.05 0.50 7.45 -51.93 -0.39 0.11 16 36 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 37 H 0.34 4.28 8.47 -39.29 -0.33 3.94 16 38 H 0.03 0.33 7.38 -51.93 -0.38 -0.05 16 39 H 0.07 0.88 8.00 -51.93 -0.42 0.47 16 40 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 44 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -29.48 352.23 -8.35 -37.83 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.16 Total: 5.72 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -1.65 Total: -25.76 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.17 Total: -33.56 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.48 -8.35 -37.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042553705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.390 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds