Wall clock time and date at job start Mon Mar 30 2020 01:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47259 * 2 1 4 4 H 1.09003 * 109.47354 * 54.99785 * 3 2 1 5 5 C 1.53000 * 109.46928 * 294.99474 * 3 2 1 6 6 C 1.53000 * 109.46973 * 174.99788 * 3 2 1 7 7 H 1.09003 * 109.47084 * 59.99831 * 6 3 2 8 8 C 1.53003 * 109.47395 * 299.99636 * 6 3 2 9 9 N 1.46903 * 109.46916 * 179.97438 * 6 3 2 10 10 C 1.46911 * 110.99737 * 205.00159 * 9 6 3 11 11 C 1.50699 * 109.46783 * 180.02562 * 10 9 6 12 12 C 1.38309 * 119.92854 * 269.72615 * 11 10 9 13 13 C 1.38102 * 120.06648 * 179.72921 * 12 11 10 14 14 C 1.38875 * 119.92872 * 0.56419 * 13 12 11 15 15 O 1.35754 * 120.06574 * 179.68733 * 14 13 12 16 16 C 1.34832 * 117.00175 * 174.48817 * 15 14 13 17 17 H 1.08004 * 119.99633 * 5.05378 * 16 15 14 18 18 C 1.38651 * 120.00125 * 185.05310 * 16 15 14 19 19 N 1.31556 * 120.00059 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99858 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47323 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47101 * 120.00540 * 20 18 16 23 23 H 1.48502 * 109.47279 * 239.99721 * 20 18 16 24 24 C 1.38876 * 119.86680 * 359.70402 * 14 13 12 25 25 C 1.38105 * 119.92760 * 0.02562 * 24 14 13 26 26 H 1.08999 * 109.47255 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47198 * 300.00510 * 1 2 3 28 28 H 1.09000 * 109.46629 * 60.00147 * 1 2 3 29 29 H 1.09000 * 109.46629 * 119.99853 * 2 1 3 30 30 H 1.09003 * 109.47047 * 239.99206 * 2 1 3 31 31 H 1.09005 * 109.47175 * 60.00735 * 5 3 2 32 32 H 1.09007 * 109.46962 * 179.97438 * 5 3 2 33 33 H 1.08994 * 109.47491 * 300.00014 * 5 3 2 34 34 H 1.09007 * 109.46796 * 60.00401 * 8 6 3 35 35 H 1.08994 * 109.47036 * 179.97438 * 8 6 3 36 36 H 1.08994 * 109.47298 * 300.00441 * 8 6 3 37 37 H 1.00902 * 110.99988 * 81.04713 * 9 6 3 38 38 H 1.09001 * 109.46709 * 299.99807 * 10 9 6 39 39 H 1.08999 * 109.47298 * 59.99996 * 10 9 6 40 40 H 1.07998 * 119.96393 * 359.97438 * 12 11 10 41 41 H 1.07999 * 120.02923 * 180.27108 * 13 12 11 42 42 H 0.97001 * 120.00297 * 179.97438 * 19 18 16 43 43 H 1.07993 * 120.03688 * 179.97438 * 24 14 13 44 44 H 1.08001 * 119.95949 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6354 2.1264 -1.3074 6 6 3.5649 1.4442 0.1258 7 1 3.9995 0.9051 -0.7160 8 6 3.9696 0.7602 1.4332 9 7 4.0546 2.8292 0.1252 10 6 5.4452 2.8956 -0.3440 11 6 5.9120 4.3284 -0.3302 12 6 5.7444 5.1195 -1.4523 13 6 6.1660 6.4346 -1.4409 14 6 6.7695 6.9589 -0.3054 15 8 7.1907 8.2494 -0.2934 16 6 7.6631 8.7283 0.8752 17 1 7.7700 8.0701 1.7248 18 6 8.0116 10.0657 0.9861 19 7 7.8819 10.8673 -0.0489 20 14 8.6653 10.7293 2.6052 21 1 8.7156 9.6328 3.6054 22 1 10.0310 11.2755 2.4010 23 1 7.7695 11.8072 3.0962 24 6 6.9414 6.1604 0.8178 25 6 6.5125 4.8477 0.8021 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5140 -0.8899 31 1 0.5490 2.1252 -1.3970 32 1 1.9984 3.1543 -1.3072 33 1 2.0700 1.5874 -2.1492 34 1 3.6063 -0.2675 1.4332 35 1 5.0559 0.7611 1.5225 36 1 3.5350 1.2992 2.2749 37 1 3.9610 3.2462 1.0392 38 1 6.0792 2.3009 0.3137 39 1 5.5054 2.5032 -1.3591 40 1 5.2797 4.7096 -2.3368 41 1 6.0309 7.0530 -2.3159 42 1 8.1253 11.8031 0.0287 43 1 7.4107 6.5652 1.7022 44 1 6.6464 4.2261 1.6751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042553705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:51 Heat of formation + Delta-G solvation = -43.320058 kcal Electronic energy + Delta-G solvation = -20971.150823 eV Core-core repulsion = 17887.487077 eV Total energy + Delta-G solvation = -3083.663746 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79434 -39.36577 -38.22866 -35.55342 -34.27062 -32.15132 -31.75032 -30.06911 -29.57037 -27.45415 -25.49234 -25.15241 -23.60493 -22.61552 -21.96876 -20.63293 -19.81795 -18.83468 -16.74827 -16.48255 -16.25996 -16.22164 -15.73714 -15.46535 -15.40704 -15.36352 -14.99415 -14.34984 -14.23446 -14.05885 -13.89048 -13.65924 -13.54361 -13.01020 -12.94455 -12.75774 -12.59052 -12.42209 -12.40233 -12.28257 -12.12410 -12.06007 -11.98398 -11.37031 -11.26811 -11.16909 -11.14710 -10.79326 -9.75838 -9.20712 -8.86725 -8.46944 -6.15031 0.62287 0.69925 1.34761 1.43228 1.53235 2.17716 2.79907 3.11788 3.48948 3.54101 3.88364 4.06236 4.07008 4.13970 4.22134 4.28997 4.38659 4.46931 4.52603 4.60636 4.64131 4.73341 4.79643 4.82345 4.83720 4.92106 5.01424 5.09192 5.11668 5.16579 5.20390 5.21567 5.28062 5.33239 5.39447 5.42502 5.59648 5.61263 5.70214 5.72903 5.84521 6.03790 6.20612 6.30676 6.56460 6.97935 7.79717 8.76754 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032200 B = 0.002912 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.353976 B = 9612.322842 C = 9811.946272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.075 4.075 4 H 0.060 0.940 5 C -0.136 4.136 6 C 0.089 3.911 7 H 0.076 0.924 8 C -0.181 4.181 9 N -0.685 5.685 10 C 0.124 3.876 11 C -0.155 4.155 12 C -0.048 4.048 13 C -0.206 4.206 14 C 0.113 3.887 15 O -0.234 6.234 16 C -0.412 4.412 17 H 0.101 0.899 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.020 2.980 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.268 1.268 24 C -0.243 4.243 25 C -0.062 4.062 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.339 0.661 38 H 0.042 0.958 39 H 0.081 0.919 40 H 0.142 0.858 41 H 0.110 0.890 42 H 0.272 0.728 43 H 0.117 0.883 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.189 -22.570 2.728 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.094 4.094 4 H 0.078 0.922 5 C -0.193 4.193 6 C -0.021 4.021 7 H 0.094 0.906 8 C -0.240 4.240 9 N -0.316 5.316 10 C -0.004 4.004 11 C -0.156 4.156 12 C -0.066 4.066 13 C -0.225 4.225 14 C 0.062 3.938 15 O -0.141 6.141 16 C -0.488 4.488 17 H 0.118 0.882 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.839 3.161 21 H -0.175 1.175 22 H -0.193 1.193 23 H -0.193 1.193 24 C -0.262 4.262 25 C -0.081 4.081 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.158 0.842 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.160 0.840 41 H 0.128 0.872 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.412 -22.063 1.868 24.468 hybrid contribution 0.915 0.668 1.204 1.654 sum -9.497 -21.395 3.073 23.608 Atomic orbital electron populations 1.21810 0.95741 1.01735 1.01754 1.21628 0.96051 0.95684 1.02275 1.21075 0.93914 0.96136 0.98304 0.92190 1.21697 1.00162 1.00801 0.96654 1.21626 0.95257 0.87819 0.97381 0.90571 1.22526 1.01210 1.02157 0.98059 1.60602 1.20049 1.18123 1.32787 1.20608 0.88358 0.90588 1.00859 1.19647 1.04647 0.97263 0.94067 1.20833 0.96022 0.91063 0.98708 1.20464 1.07129 0.97617 0.97336 1.19943 0.93225 0.85176 0.95413 1.83944 1.71652 1.22921 1.35589 1.21853 1.43190 0.94860 0.88908 0.88153 1.26603 0.97328 0.94835 1.03427 1.70194 1.47460 1.05996 1.32388 0.84518 0.77921 0.78639 0.75037 1.17458 1.19319 1.19349 1.21218 1.09742 0.96175 0.99050 1.20933 0.95793 0.93269 0.98103 0.92257 0.93074 0.92732 0.91243 0.91893 0.93043 0.93080 0.93354 0.90714 0.93022 0.92628 0.84232 0.93953 0.90096 0.83995 0.87179 0.91862 0.86532 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.67 71.98 0.70 -1.18 16 2 C -0.12 -1.51 5.19 30.59 0.16 -1.35 16 3 C -0.08 -1.20 2.16 -10.80 -0.02 -1.22 16 4 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 5 C -0.14 -2.46 8.79 71.98 0.63 -1.82 16 6 C 0.09 1.46 2.17 44.92 0.10 1.56 16 7 H 0.08 1.26 7.80 -2.39 -0.02 1.24 16 8 C -0.18 -2.56 8.82 71.98 0.63 -1.92 16 9 N -0.69 -14.38 5.47 -495.54 -2.71 -17.09 16 10 C 0.12 2.80 5.61 85.55 0.48 3.28 16 11 C -0.16 -4.79 5.40 -19.83 -0.11 -4.89 16 12 C -0.05 -1.64 9.69 22.25 0.22 -1.43 16 13 C -0.21 -9.01 9.99 22.39 0.22 -8.79 16 14 C 0.11 5.72 6.65 22.58 0.15 5.87 16 15 O -0.23 -14.38 9.76 -22.80 -0.22 -14.60 16 16 C -0.41 -24.35 9.49 67.92 0.64 -23.70 16 17 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 18 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 19 N -0.92 -57.37 13.67 21.61 0.30 -57.07 16 20 Si 1.02 43.34 29.55 68.60 2.03 45.36 16 21 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 C -0.24 -10.66 9.17 22.39 0.21 -10.45 16 25 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.70 6.56 -2.39 -0.02 0.68 16 29 H 0.07 0.80 6.17 -2.39 -0.01 0.78 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.86 6.57 -2.38 -0.02 0.84 16 32 H 0.05 1.14 7.60 -2.38 -0.02 1.12 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.88 6.32 -2.38 -0.02 0.86 16 35 H 0.05 0.76 7.45 -2.39 -0.02 0.74 16 36 H 0.05 0.81 8.13 -2.39 -0.02 0.79 16 37 H 0.34 7.42 8.47 -89.69 -0.76 6.66 16 38 H 0.04 0.86 7.38 -2.39 -0.02 0.85 16 39 H 0.08 1.70 8.00 -2.39 -0.02 1.69 16 40 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 41 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 44 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -68.33 352.23 4.30 -64.03 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.22 Total: 28.31 kcal Atomic # 6 Polarization: -53.62 SS G_CDS: 4.69 Total: -48.93 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -2.42 Total: -74.17 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.22 Total: -14.60 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -68.33 4.30 -64.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042553705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.709 kcal (2) G-P(sol) polarization free energy of solvation -68.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds