Wall clock time and date at job start Mon Mar 30 2020 01:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47048 * 2 1 4 4 H 1.09004 * 109.47446 * 304.99967 * 3 2 1 5 5 C 1.53002 * 109.47178 * 65.00074 * 3 2 1 6 6 C 1.53001 * 109.47085 * 185.00046 * 3 2 1 7 7 H 1.08999 * 109.47314 * 300.00017 * 6 3 2 8 8 C 1.52994 * 109.47021 * 60.00571 * 6 3 2 9 9 N 1.46908 * 109.46905 * 180.02562 * 6 3 2 10 10 C 1.46903 * 110.99867 * 155.00125 * 9 6 3 11 11 C 1.50699 * 109.47107 * 179.97438 * 10 9 6 12 12 C 1.38328 * 119.96224 * 270.02211 * 11 10 9 13 13 C 1.38281 * 120.13505 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46814 * 90.00164 * 21 19 17 23 23 H 1.48501 * 109.47378 * 210.00272 * 21 19 17 24 24 H 1.48503 * 109.47143 * 330.00397 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99605 * 11 10 9 26 26 H 1.09006 * 109.47410 * 299.99746 * 1 2 3 27 27 H 1.09003 * 109.47699 * 60.00237 * 1 2 3 28 28 H 1.09007 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46710 * 240.00057 * 2 1 3 30 30 H 1.09000 * 109.46983 * 119.99928 * 2 1 3 31 31 H 1.08999 * 109.47007 * 60.00114 * 5 3 2 32 32 H 1.08999 * 109.47299 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.47326 * 299.99943 * 5 3 2 34 34 H 1.09001 * 109.47257 * 180.02562 * 8 6 3 35 35 H 1.09008 * 109.46599 * 299.99212 * 8 6 3 36 36 H 1.08991 * 109.47709 * 59.99837 * 8 6 3 37 37 H 1.00893 * 110.99912 * 31.04571 * 9 6 3 38 38 H 1.09004 * 109.46952 * 59.99542 * 10 9 6 39 39 H 1.08998 * 109.46757 * 300.00157 * 10 9 6 40 40 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 41 41 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.03256 * 180.31909 * 14 13 12 43 43 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 44 44 H 1.08004 * 120.03912 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4443 -0.1257 7 1 3.9994 0.9053 0.7161 8 6 3.9695 0.7604 -1.4331 9 7 4.0545 2.8293 -0.1251 10 6 5.4450 2.8959 0.3439 11 6 5.9118 4.3287 0.3303 12 6 6.5117 4.8490 -0.8023 13 6 6.9409 6.1635 -0.8190 14 6 6.7656 6.9628 0.2937 15 6 6.1689 6.4418 1.4341 16 8 6.0007 7.2232 2.5313 17 6 6.5420 8.4574 2.4926 18 1 7.0093 8.8140 1.5866 19 6 6.4988 9.2689 3.6161 20 7 5.9301 8.8344 4.7199 21 14 7.2494 10.9786 3.5627 22 1 6.2223 11.9566 3.1222 23 1 7.7365 11.3480 4.9161 24 1 8.3862 10.9906 2.6072 25 6 5.7396 5.1208 1.4480 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0699 1.5875 2.1492 32 1 1.9989 3.1540 1.3076 33 1 0.5489 2.1252 1.3970 34 1 5.0558 0.7613 -1.5225 35 1 3.6062 -0.2674 -1.4331 36 1 3.5349 1.2994 -2.2749 37 1 3.4570 3.4238 0.4294 38 1 6.0791 2.3012 -0.3137 39 1 5.5051 2.5034 1.3590 40 1 6.6453 4.2274 -1.6754 41 1 7.4093 6.5667 -1.7045 42 1 7.0964 7.9908 0.2783 43 1 5.9002 9.4020 5.5059 44 1 5.2711 4.7140 2.3320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042553719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:54 Heat of formation + Delta-G solvation = -24.148371 kcal Electronic energy + Delta-G solvation = -21128.740792 eV Core-core repulsion = 18045.908392 eV Total energy + Delta-G solvation = -3082.832399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.16202 -38.42079 -36.62040 -34.49326 -32.27229 -31.41685 -29.54644 -29.37889 -28.60720 -25.48297 -24.70587 -24.41249 -21.72691 -21.47561 -20.61285 -19.76692 -17.63850 -17.02331 -15.96119 -15.51227 -15.03937 -14.75517 -14.56355 -14.38810 -14.07678 -13.68541 -13.50959 -13.41435 -13.31202 -12.66459 -12.57458 -12.28673 -12.11963 -12.01229 -11.85566 -11.64346 -11.53650 -11.29469 -11.24766 -10.88619 -10.74253 -10.69425 -10.59716 -10.49451 -10.40079 -10.29362 -9.31459 -8.81868 -8.33719 -8.01688 -7.19429 -6.42526 -4.01719 2.14143 2.42784 3.13971 3.14911 3.19640 3.98381 4.20870 4.61697 4.68814 4.70988 4.82891 5.07860 5.11504 5.20098 5.28389 5.33642 5.36801 5.43710 5.44627 5.57712 5.65602 5.72510 5.78281 5.80081 5.83729 5.87635 5.90846 5.94374 6.00226 6.01839 6.18765 6.22901 6.24898 6.34112 6.37227 6.69784 6.94491 7.10200 7.18232 7.32333 7.42509 7.46313 7.56938 7.86239 8.02642 9.03468 9.74208 10.75780 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024909 B = 0.003318 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.820179 B = 8436.937248 C = 9298.082926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.078 0.922 5 C -0.156 4.156 6 C 0.086 3.914 7 H 0.041 0.959 8 C -0.141 4.141 9 N -0.681 5.681 10 C 0.106 3.894 11 C -0.046 4.046 12 C -0.188 4.188 13 C -0.078 4.078 14 C -0.232 4.232 15 C 0.153 3.847 16 O -0.181 6.181 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.865 5.865 21 Si 0.940 3.060 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.185 4.185 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.345 0.655 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.269 0.731 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 -14.543 -9.241 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.112 4.112 4 H 0.097 0.903 5 C -0.214 4.214 6 C -0.024 4.024 7 H 0.059 0.941 8 C -0.199 4.199 9 N -0.315 5.315 10 C -0.022 4.022 11 C -0.047 4.047 12 C -0.208 4.208 13 C -0.096 4.096 14 C -0.251 4.251 15 C 0.100 3.900 16 O -0.085 6.085 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.500 5.500 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.205 4.205 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.167 0.833 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.812 -14.501 -9.434 18.250 hybrid contribution 0.336 0.848 0.909 1.287 sum -5.476 -13.653 -8.525 17.002 Atomic orbital electron populations 1.21823 0.95941 1.01324 1.01993 1.21618 0.95829 0.96235 1.02066 1.21324 0.94735 0.96387 0.98791 0.90346 1.21968 1.01671 1.00773 0.96978 1.21547 0.93877 0.89668 0.97275 0.94127 1.21851 1.01261 0.99184 0.97556 1.60610 1.02966 1.08191 1.59763 1.20829 0.89709 0.93712 0.97957 1.19186 0.98029 0.94082 0.93407 1.20416 1.06660 0.95904 0.97796 1.20745 0.98075 0.93793 0.96967 1.21186 1.08411 1.01229 0.94279 1.19301 0.92620 0.90538 0.87576 1.83974 1.66264 1.25313 1.32900 1.21311 1.37318 0.88437 0.99676 0.89144 1.25268 0.97119 0.99860 0.94269 1.70035 1.41035 1.37042 1.01900 0.85728 0.79148 0.80565 0.78079 1.19905 1.20286 1.19226 1.20029 1.09149 0.92231 0.99130 0.92500 0.92750 0.93032 0.91525 0.92191 0.92806 0.92144 0.92116 0.92911 0.92643 0.92068 0.83328 0.90737 0.94857 0.87645 0.87527 0.85684 0.92099 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.12 -0.98 5.19 -26.73 -0.14 -1.12 16 3 C -0.09 -0.91 2.11 -90.62 -0.19 -1.10 16 4 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 5 C -0.16 -1.58 8.71 37.16 0.32 -1.26 16 6 C 0.09 0.94 2.23 -67.71 -0.15 0.79 16 7 H 0.04 0.46 7.80 -51.93 -0.40 0.05 16 8 C -0.14 -1.41 9.07 37.15 0.34 -1.07 16 9 N -0.68 -9.20 6.30 -107.99 -0.68 -9.88 16 10 C 0.11 1.56 5.61 -4.97 -0.03 1.53 16 11 C -0.05 -0.84 5.39 -104.65 -0.56 -1.41 16 12 C -0.19 -3.38 9.70 -39.53 -0.38 -3.76 16 13 C -0.08 -1.47 10.04 -39.61 -0.40 -1.87 16 14 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16 15 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 16 O -0.18 -5.21 9.76 0.05 0.00 -5.21 16 17 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 18 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 21 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 25 C -0.19 -3.96 9.65 -39.39 -0.38 -4.34 16 26 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 29 H 0.07 0.52 6.17 -51.93 -0.32 0.20 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.68 6.21 -51.93 -0.32 0.36 16 33 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 34 H 0.05 0.55 7.46 -51.93 -0.39 0.16 16 35 H 0.05 0.46 6.32 -51.92 -0.33 0.13 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.35 4.88 6.15 -39.30 -0.24 4.64 16 38 H 0.07 1.01 7.38 -51.93 -0.38 0.63 16 39 H 0.03 0.48 8.00 -51.93 -0.42 0.07 16 40 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.11 2.33 8.06 -52.48 -0.42 1.90 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -29.94 349.56 -8.31 -38.25 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.99 Total: 6.89 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -1.64 Total: -26.20 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.08 Total: -34.67 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: 0.00 Total: -5.21 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.94 -8.31 -38.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042553719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.099 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds