Wall clock time and date at job start Mon Mar 30 2020 01:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47048 * 2 1 4 4 H 1.09004 * 109.47446 * 304.99967 * 3 2 1 5 5 C 1.53002 * 109.47178 * 65.00074 * 3 2 1 6 6 C 1.53001 * 109.47085 * 185.00046 * 3 2 1 7 7 H 1.08999 * 109.47314 * 300.00017 * 6 3 2 8 8 C 1.52994 * 109.47021 * 60.00571 * 6 3 2 9 9 N 1.46908 * 109.46905 * 180.02562 * 6 3 2 10 10 C 1.46903 * 110.99867 * 155.00125 * 9 6 3 11 11 C 1.50699 * 109.47107 * 179.97438 * 10 9 6 12 12 C 1.38328 * 119.96224 * 270.02211 * 11 10 9 13 13 C 1.38281 * 120.13505 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46814 * 90.00164 * 21 19 17 23 23 H 1.48501 * 109.47378 * 210.00272 * 21 19 17 24 24 H 1.48503 * 109.47143 * 330.00397 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99605 * 11 10 9 26 26 H 1.09006 * 109.47410 * 299.99746 * 1 2 3 27 27 H 1.09003 * 109.47699 * 60.00237 * 1 2 3 28 28 H 1.09007 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46710 * 240.00057 * 2 1 3 30 30 H 1.09000 * 109.46983 * 119.99928 * 2 1 3 31 31 H 1.08999 * 109.47007 * 60.00114 * 5 3 2 32 32 H 1.08999 * 109.47299 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.47326 * 299.99943 * 5 3 2 34 34 H 1.09001 * 109.47257 * 180.02562 * 8 6 3 35 35 H 1.09008 * 109.46599 * 299.99212 * 8 6 3 36 36 H 1.08991 * 109.47709 * 59.99837 * 8 6 3 37 37 H 1.00893 * 110.99912 * 31.04571 * 9 6 3 38 38 H 1.09004 * 109.46952 * 59.99542 * 10 9 6 39 39 H 1.08998 * 109.46757 * 300.00157 * 10 9 6 40 40 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 41 41 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.03256 * 180.31909 * 14 13 12 43 43 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 44 44 H 1.08004 * 120.03912 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4443 -0.1257 7 1 3.9994 0.9053 0.7161 8 6 3.9695 0.7604 -1.4331 9 7 4.0545 2.8293 -0.1251 10 6 5.4450 2.8959 0.3439 11 6 5.9118 4.3287 0.3303 12 6 6.5117 4.8490 -0.8023 13 6 6.9409 6.1635 -0.8190 14 6 6.7656 6.9628 0.2937 15 6 6.1689 6.4418 1.4341 16 8 6.0007 7.2232 2.5313 17 6 6.5420 8.4574 2.4926 18 1 7.0093 8.8140 1.5866 19 6 6.4988 9.2689 3.6161 20 7 5.9301 8.8344 4.7199 21 14 7.2494 10.9786 3.5627 22 1 6.2223 11.9566 3.1222 23 1 7.7365 11.3480 4.9161 24 1 8.3862 10.9906 2.6072 25 6 5.7396 5.1208 1.4480 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0699 1.5875 2.1492 32 1 1.9989 3.1540 1.3076 33 1 0.5489 2.1252 1.3970 34 1 5.0558 0.7613 -1.5225 35 1 3.6062 -0.2674 -1.4331 36 1 3.5349 1.2994 -2.2749 37 1 3.4570 3.4238 0.4294 38 1 6.0791 2.3012 -0.3137 39 1 5.5051 2.5034 1.3590 40 1 6.6453 4.2274 -1.6754 41 1 7.4093 6.5667 -1.7045 42 1 7.0964 7.9908 0.2783 43 1 5.9002 9.4020 5.5059 44 1 5.2711 4.7140 2.3320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042553719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:53 Heat of formation + Delta-G solvation = -41.546282 kcal Electronic energy + Delta-G solvation = -21129.495222 eV Core-core repulsion = 18045.908392 eV Total energy + Delta-G solvation = -3083.586829 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.82445 -39.48906 -38.25332 -35.55932 -34.28474 -32.62658 -30.91391 -30.33356 -29.94034 -27.40677 -25.99165 -25.26201 -23.20837 -22.62564 -22.09365 -20.63717 -19.47710 -18.80494 -17.11737 -16.74851 -16.36555 -16.22341 -16.08062 -15.63254 -15.41382 -15.37163 -14.62256 -14.55991 -14.22593 -14.13639 -13.94874 -13.60790 -13.31500 -13.18862 -12.94235 -12.82324 -12.58328 -12.46165 -12.43559 -12.27518 -12.19874 -12.10247 -12.04945 -11.47736 -11.33239 -11.19310 -11.13818 -10.80333 -9.72256 -9.31599 -8.97923 -8.47079 -6.15537 0.52182 0.76137 1.34561 1.44018 1.52168 2.17584 2.79071 3.10291 3.34438 3.54401 3.79354 3.91596 4.01570 4.06650 4.11718 4.32866 4.39560 4.47988 4.49466 4.59509 4.61594 4.66675 4.68713 4.73136 4.74564 4.85008 4.98403 5.03252 5.08408 5.12598 5.13605 5.15133 5.20703 5.24934 5.31561 5.41538 5.53465 5.56920 5.65937 5.73680 5.80730 6.02651 6.13701 6.25535 6.42701 6.97815 7.79035 8.76340 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024909 B = 0.003318 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.820179 B = 8436.937248 C = 9298.082926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.088 4.088 4 H 0.072 0.928 5 C -0.156 4.156 6 C 0.085 3.915 7 H 0.040 0.960 8 C -0.137 4.137 9 N -0.686 5.686 10 C 0.112 3.888 11 C -0.037 4.037 12 C -0.170 4.170 13 C -0.072 4.072 14 C -0.245 4.245 15 C 0.114 3.886 16 O -0.234 6.234 17 C -0.413 4.413 18 H 0.101 0.899 19 C -0.023 4.023 20 N -0.922 5.922 21 Si 1.018 2.982 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.197 4.197 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.339 0.661 38 H 0.096 0.904 39 H 0.033 0.967 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.118 0.882 43 H 0.272 0.728 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 -15.905 -11.917 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.107 4.107 4 H 0.091 0.909 5 C -0.214 4.214 6 C -0.024 4.024 7 H 0.058 0.942 8 C -0.195 4.195 9 N -0.320 5.320 10 C -0.017 4.017 11 C -0.038 4.038 12 C -0.189 4.189 13 C -0.090 4.090 14 C -0.264 4.264 15 C 0.064 3.936 16 O -0.141 6.141 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.838 3.162 22 H -0.188 1.188 23 H -0.196 1.196 24 H -0.177 1.177 25 C -0.217 4.217 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.159 0.841 38 H 0.114 0.886 39 H 0.051 0.949 40 H 0.161 0.839 41 H 0.163 0.837 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.305 -15.910 -12.163 20.717 hybrid contribution 0.140 1.002 1.533 1.836 sum -5.165 -14.908 -10.630 19.024 Atomic orbital electron populations 1.21820 0.95440 1.01966 1.01840 1.21592 0.96246 0.94941 1.02552 1.21277 0.93927 0.97427 0.98055 0.90914 1.21964 1.02210 0.99798 0.97396 1.21649 0.94570 0.88163 0.98025 0.94172 1.21830 1.01177 1.00033 0.96410 1.60662 1.02230 1.09738 1.59325 1.20817 0.90828 0.91317 0.98734 1.19588 0.96548 0.95456 0.92206 1.20937 1.03803 0.95754 0.98428 1.21159 0.97120 0.93859 0.96896 1.21307 1.08737 1.01545 0.94831 1.19853 0.94529 0.91541 0.87714 1.83936 1.68676 1.26191 1.35292 1.21815 1.37719 0.88900 1.00513 0.88189 1.26584 0.97435 1.04527 0.93506 1.70183 1.43656 1.39215 1.02977 0.84592 0.78639 0.74427 0.78582 1.18779 1.19562 1.17674 1.20223 1.09391 0.91706 1.00342 0.92868 0.92726 0.92015 0.90604 0.92079 0.92955 0.93813 0.91276 0.93017 0.90787 0.92532 0.84079 0.88596 0.94901 0.83858 0.83724 0.86427 0.91877 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.67 71.98 0.70 -1.32 16 2 C -0.12 -1.64 5.19 30.59 0.16 -1.48 16 3 C -0.09 -1.57 2.11 -10.79 -0.02 -1.60 16 4 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 5 C -0.16 -3.09 8.71 71.98 0.63 -2.46 16 6 C 0.09 1.69 2.23 44.91 0.10 1.79 16 7 H 0.04 0.82 7.80 -2.39 -0.02 0.80 16 8 C -0.14 -2.32 9.07 71.98 0.65 -1.66 16 9 N -0.69 -17.32 6.30 -495.56 -3.12 -20.44 16 10 C 0.11 3.02 5.61 85.56 0.48 3.50 16 11 C -0.04 -1.30 5.39 -19.88 -0.11 -1.41 16 12 C -0.17 -5.51 9.70 22.30 0.22 -5.29 16 13 C -0.07 -2.55 10.04 22.25 0.22 -2.33 16 14 C -0.24 -10.93 9.17 22.39 0.21 -10.72 16 15 C 0.11 5.80 6.65 22.58 0.15 5.95 16 16 O -0.23 -14.38 9.76 -22.74 -0.22 -14.60 16 17 C -0.41 -24.49 9.49 67.92 0.64 -23.85 16 18 H 0.10 5.45 5.21 -2.91 -0.02 5.44 16 19 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 20 N -0.92 -57.29 13.67 21.61 0.30 -56.99 16 21 Si 1.02 43.39 29.55 68.60 2.03 45.41 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 24 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 25 C -0.20 -8.62 9.65 22.39 0.22 -8.40 16 26 H 0.05 0.73 6.57 -2.38 -0.02 0.72 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.08 0.95 6.17 -2.39 -0.01 0.93 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.04 1.00 6.21 -2.39 -0.01 0.99 16 33 H 0.07 1.23 6.57 -2.39 -0.02 1.21 16 34 H 0.05 0.89 7.46 -2.39 -0.02 0.87 16 35 H 0.07 0.98 6.32 -2.38 -0.02 0.97 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.34 9.40 6.15 -89.70 -0.55 8.85 16 38 H 0.10 2.24 7.38 -2.38 -0.02 2.22 16 39 H 0.03 0.91 8.00 -2.39 -0.02 0.89 16 40 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 41 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 42 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -68.80 349.56 4.12 -64.69 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.43 Total: 32.08 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 4.71 Total: -50.15 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -2.83 Total: -77.43 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.22 Total: -14.60 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -68.80 4.12 -64.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042553719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.140 kcal (2) G-P(sol) polarization free energy of solvation -68.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds