Wall clock time and date at job start Mon Mar 30 2020 01:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47065 * 2 1 4 4 H 1.09001 * 109.47735 * 304.99920 * 3 2 1 5 5 C 1.52997 * 109.46945 * 65.00652 * 3 2 1 6 6 C 1.53007 * 109.46869 * 185.00228 * 3 2 1 7 7 H 1.08999 * 109.47099 * 60.00329 * 6 3 2 8 8 C 1.53004 * 109.46971 * 300.00048 * 6 3 2 9 9 N 1.46897 * 109.46987 * 180.02562 * 6 3 2 10 10 C 1.46905 * 110.99971 * 205.00210 * 9 6 3 11 11 C 1.50699 * 109.47118 * 179.97438 * 10 9 6 12 12 C 1.38324 * 119.96469 * 269.72067 * 11 10 9 13 13 C 1.38277 * 120.13529 * 179.77093 * 12 11 10 14 14 C 1.38119 * 120.07101 * 0.50407 * 13 12 11 15 15 C 1.38853 * 119.93105 * 359.75245 * 14 13 12 16 16 O 1.35752 * 120.06843 * 179.97438 * 15 14 13 17 17 C 1.34826 * 117.00449 * 354.48092 * 16 15 14 18 18 H 1.08005 * 119.99554 * 5.06201 * 17 16 15 19 19 C 1.38654 * 120.00499 * 185.06030 * 17 16 15 20 20 N 1.31555 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99984 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47201 * 60.00332 * 21 19 17 23 23 H 1.48499 * 109.46976 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47289 * 299.99967 * 21 19 17 25 25 C 1.38081 * 119.96460 * 89.99887 * 11 10 9 26 26 H 1.08997 * 109.47453 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46883 * 300.00015 * 1 2 3 28 28 H 1.09004 * 109.47094 * 59.99154 * 1 2 3 29 29 H 1.09004 * 109.46788 * 240.00762 * 2 1 3 30 30 H 1.09000 * 109.47351 * 120.00398 * 2 1 3 31 31 H 1.09007 * 109.47317 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.47336 * 299.99205 * 5 3 2 33 33 H 1.08997 * 109.47739 * 59.99586 * 5 3 2 34 34 H 1.08997 * 109.47031 * 59.99999 * 8 6 3 35 35 H 1.08996 * 109.46890 * 180.02562 * 8 6 3 36 36 H 1.08999 * 109.47439 * 300.00074 * 8 6 3 37 37 H 1.00898 * 111.00216 * 328.95105 * 9 6 3 38 38 H 1.09004 * 109.46588 * 299.99544 * 10 9 6 39 39 H 1.08994 * 109.46893 * 59.99453 * 10 9 6 40 40 H 1.08003 * 119.92822 * 0.02562 * 12 11 10 41 41 H 1.08002 * 119.96290 * 180.25578 * 13 12 11 42 42 H 1.08007 * 120.03417 * 179.77206 * 14 13 12 43 43 H 0.97000 * 120.00127 * 180.02562 * 20 19 17 44 44 H 1.07999 * 120.03539 * 359.94942 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6354 2.1264 1.3074 6 6 3.5649 1.4443 -0.1258 7 1 3.8532 0.9570 -1.0572 8 6 4.1750 0.6876 1.0558 9 7 4.0546 2.8292 -0.1252 10 6 5.3499 2.9299 -0.8110 11 6 5.8190 4.3619 -0.7908 12 6 5.4739 5.2165 -1.8222 13 6 5.8984 6.5324 -1.8049 14 6 6.6774 6.9946 -0.7622 15 6 7.0300 6.1377 0.2720 16 8 7.7960 6.5889 1.2979 17 6 8.2765 7.8446 1.1969 18 1 7.9807 8.4710 0.3683 19 6 9.1505 8.3318 2.1567 20 7 9.5113 7.5687 3.1658 21 14 9.8157 10.0718 2.0171 22 1 8.6869 11.0364 2.0372 23 1 10.7236 10.3478 3.1593 24 1 10.5659 10.2142 0.7435 25 6 6.5976 4.8178 0.2544 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.9991 3.1540 1.3077 32 1 0.5490 2.1252 1.3970 33 1 2.0700 1.5874 2.1492 34 1 3.8116 -0.3400 1.0558 35 1 5.2612 0.6892 0.9665 36 1 3.8867 1.1748 1.9873 37 1 3.3773 3.4524 -0.5385 38 1 6.0802 2.3007 -0.3021 39 1 5.2410 2.5980 -1.8434 40 1 4.8681 4.8564 -2.6406 41 1 5.6239 7.1984 -2.6096 42 1 7.0118 8.0216 -0.7511 43 1 10.1224 7.9096 3.8375 44 1 6.8698 4.1491 1.0576 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042553725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:00 Heat of formation + Delta-G solvation = -23.708710 kcal Electronic energy + Delta-G solvation = -21100.704242 eV Core-core repulsion = 18017.890908 eV Total energy + Delta-G solvation = -3082.813334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.14952 -38.45109 -36.63984 -34.51863 -32.26031 -31.43326 -29.56695 -28.84128 -28.44159 -25.64028 -25.20687 -24.42676 -21.85475 -21.56061 -20.54898 -19.15929 -17.64150 -16.93151 -15.80390 -15.58560 -15.20870 -15.01456 -14.63523 -14.33659 -14.17967 -13.72054 -13.45799 -13.32350 -13.01962 -12.58731 -12.39340 -12.35128 -12.17197 -11.99260 -11.84381 -11.74904 -11.54705 -11.24529 -11.02587 -10.85538 -10.74187 -10.70487 -10.56618 -10.52999 -10.44917 -10.26487 -9.29639 -8.80729 -8.29948 -8.01556 -7.19369 -6.40721 -3.99860 2.16414 2.41205 3.15317 3.16424 3.19164 3.99709 4.20364 4.62366 4.67377 4.69454 4.91494 5.09081 5.10706 5.18198 5.29679 5.31307 5.39380 5.48606 5.53460 5.59775 5.61589 5.73171 5.77841 5.81265 5.84628 5.91325 5.94846 5.98521 6.00121 6.05981 6.17750 6.22236 6.33264 6.41151 6.47894 6.71209 6.96814 7.10637 7.17799 7.34708 7.38781 7.48238 7.56334 7.86762 8.04227 9.04793 9.76087 10.77401 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029556 B = 0.003119 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.119503 B = 8975.528838 C = 9379.936997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.092 4.092 4 H 0.065 0.935 5 C -0.145 4.145 6 C 0.087 3.913 7 H 0.039 0.961 8 C -0.144 4.144 9 N -0.675 5.675 10 C 0.107 3.893 11 C -0.047 4.047 12 C -0.208 4.208 13 C -0.076 4.076 14 C -0.233 4.233 15 C 0.152 3.848 16 O -0.178 6.178 17 C -0.392 4.392 18 H 0.090 0.910 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.166 4.166 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.341 0.659 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.125 0.875 43 H 0.270 0.730 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.521 -11.691 -7.256 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.111 4.111 4 H 0.083 0.917 5 C -0.202 4.202 6 C -0.022 4.022 7 H 0.056 0.944 8 C -0.201 4.201 9 N -0.307 5.307 10 C -0.021 4.021 11 C -0.048 4.048 12 C -0.227 4.227 13 C -0.094 4.094 14 C -0.253 4.253 15 C 0.098 3.902 16 O -0.082 6.082 17 C -0.468 4.468 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.185 4.185 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.160 0.840 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.080 0.920 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.004 -11.833 -6.195 18.641 hybrid contribution 0.096 0.916 -1.110 1.442 sum -12.909 -10.917 -7.305 18.417 Atomic orbital electron populations 1.21821 0.95993 1.01315 1.01930 1.21601 0.95739 0.96322 1.02014 1.21318 0.94446 0.96271 0.99057 0.91655 1.21853 1.00090 1.01599 0.96640 1.21548 0.93538 0.89589 0.97561 0.94352 1.21899 1.00647 0.98688 0.98912 1.60541 1.04665 1.06254 1.59257 1.20836 0.91570 0.93956 0.95786 1.19167 0.97100 0.94183 0.94305 1.20414 1.07607 0.94485 1.00223 1.20679 0.96642 0.95068 0.97043 1.21172 1.05984 1.00991 0.97128 1.19363 0.90772 0.92403 0.87614 1.83981 1.56830 1.31480 1.35914 1.21264 1.26732 0.87312 1.11494 0.89217 1.25271 0.96154 0.99986 0.95091 1.70031 1.32160 1.36378 1.11301 0.85797 0.78941 0.80542 0.78233 1.19536 1.20301 1.19556 1.20019 1.04489 0.93747 1.00288 0.93035 0.92357 0.92974 0.92338 0.91510 0.91531 0.93307 0.92359 0.92799 0.92868 0.91514 0.84012 0.90581 0.95078 0.88155 0.87641 0.85709 0.92022 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C -0.12 -0.95 4.90 -26.73 -0.13 -1.08 16 3 C -0.09 -0.86 2.07 -90.62 -0.19 -1.04 16 4 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 5 C -0.14 -1.44 8.44 37.16 0.31 -1.12 16 6 C 0.09 0.94 2.44 -67.71 -0.17 0.78 16 7 H 0.04 0.41 7.80 -51.93 -0.41 0.01 16 8 C -0.14 -1.56 8.71 37.16 0.32 -1.24 16 9 N -0.68 -8.89 5.58 -107.99 -0.60 -9.50 16 10 C 0.11 1.55 5.61 -4.97 -0.03 1.52 16 11 C -0.05 -0.85 5.39 -104.65 -0.56 -1.41 16 12 C -0.21 -3.62 9.70 -39.54 -0.38 -4.01 16 13 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 14 C -0.23 -5.18 9.17 -39.40 -0.36 -5.54 16 15 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 16 O -0.18 -5.19 9.76 0.05 0.00 -5.19 16 17 C -0.39 -11.12 9.49 30.89 0.29 -10.82 16 18 H 0.09 2.35 5.20 -52.48 -0.27 2.08 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.67 13.67 55.48 0.76 -24.91 16 21 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 C -0.17 -3.60 9.65 -39.39 -0.38 -3.98 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 6.57 -51.93 -0.34 0.08 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.54 6.71 -51.93 -0.35 0.19 16 31 H 0.07 0.77 7.48 -51.92 -0.39 0.38 16 32 H 0.05 0.43 6.57 -51.93 -0.34 0.09 16 33 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 34 H 0.05 0.49 6.54 -51.93 -0.34 0.15 16 35 H 0.05 0.62 7.45 -51.93 -0.39 0.23 16 36 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 37 H 0.34 4.38 8.18 -39.29 -0.32 4.06 16 38 H 0.08 1.12 7.38 -51.93 -0.38 0.73 16 39 H 0.03 0.41 8.00 -51.93 -0.42 0.00 16 40 H 0.10 1.48 8.06 -52.48 -0.42 1.06 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.13 2.77 5.64 -52.48 -0.30 2.47 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 348.68 15.07 5.25 5.25 Total: -1.00 -30.03 348.68 -8.28 -38.31 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.00 Total: 6.33 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -1.67 Total: -26.03 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.16 Total: -34.41 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.03 -8.28 -38.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042553725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.597 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds