Wall clock time and date at job start Mon Mar 30 2020 01:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47065 * 2 1 4 4 H 1.09001 * 109.47735 * 304.99920 * 3 2 1 5 5 C 1.52997 * 109.46945 * 65.00652 * 3 2 1 6 6 C 1.53007 * 109.46869 * 185.00228 * 3 2 1 7 7 H 1.08999 * 109.47099 * 60.00329 * 6 3 2 8 8 C 1.53004 * 109.46971 * 300.00048 * 6 3 2 9 9 N 1.46897 * 109.46987 * 180.02562 * 6 3 2 10 10 C 1.46905 * 110.99971 * 205.00210 * 9 6 3 11 11 C 1.50699 * 109.47118 * 179.97438 * 10 9 6 12 12 C 1.38324 * 119.96469 * 269.72067 * 11 10 9 13 13 C 1.38277 * 120.13529 * 179.77093 * 12 11 10 14 14 C 1.38119 * 120.07101 * 0.50407 * 13 12 11 15 15 C 1.38853 * 119.93105 * 359.75245 * 14 13 12 16 16 O 1.35752 * 120.06843 * 179.97438 * 15 14 13 17 17 C 1.34826 * 117.00449 * 354.48092 * 16 15 14 18 18 H 1.08005 * 119.99554 * 5.06201 * 17 16 15 19 19 C 1.38654 * 120.00499 * 185.06030 * 17 16 15 20 20 N 1.31555 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99984 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47201 * 60.00332 * 21 19 17 23 23 H 1.48499 * 109.46976 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47289 * 299.99967 * 21 19 17 25 25 C 1.38081 * 119.96460 * 89.99887 * 11 10 9 26 26 H 1.08997 * 109.47453 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46883 * 300.00015 * 1 2 3 28 28 H 1.09004 * 109.47094 * 59.99154 * 1 2 3 29 29 H 1.09004 * 109.46788 * 240.00762 * 2 1 3 30 30 H 1.09000 * 109.47351 * 120.00398 * 2 1 3 31 31 H 1.09007 * 109.47317 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.47336 * 299.99205 * 5 3 2 33 33 H 1.08997 * 109.47739 * 59.99586 * 5 3 2 34 34 H 1.08997 * 109.47031 * 59.99999 * 8 6 3 35 35 H 1.08996 * 109.46890 * 180.02562 * 8 6 3 36 36 H 1.08999 * 109.47439 * 300.00074 * 8 6 3 37 37 H 1.00898 * 111.00216 * 328.95105 * 9 6 3 38 38 H 1.09004 * 109.46588 * 299.99544 * 10 9 6 39 39 H 1.08994 * 109.46893 * 59.99453 * 10 9 6 40 40 H 1.08003 * 119.92822 * 0.02562 * 12 11 10 41 41 H 1.08002 * 119.96290 * 180.25578 * 13 12 11 42 42 H 1.08007 * 120.03417 * 179.77206 * 14 13 12 43 43 H 0.97000 * 120.00127 * 180.02562 * 20 19 17 44 44 H 1.07999 * 120.03539 * 359.94942 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6354 2.1264 1.3074 6 6 3.5649 1.4443 -0.1258 7 1 3.8532 0.9570 -1.0572 8 6 4.1750 0.6876 1.0558 9 7 4.0546 2.8292 -0.1252 10 6 5.3499 2.9299 -0.8110 11 6 5.8190 4.3619 -0.7908 12 6 5.4739 5.2165 -1.8222 13 6 5.8984 6.5324 -1.8049 14 6 6.6774 6.9946 -0.7622 15 6 7.0300 6.1377 0.2720 16 8 7.7960 6.5889 1.2979 17 6 8.2765 7.8446 1.1969 18 1 7.9807 8.4710 0.3683 19 6 9.1505 8.3318 2.1567 20 7 9.5113 7.5687 3.1658 21 14 9.8157 10.0718 2.0171 22 1 8.6869 11.0364 2.0372 23 1 10.7236 10.3478 3.1593 24 1 10.5659 10.2142 0.7435 25 6 6.5976 4.8178 0.2544 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.9991 3.1540 1.3077 32 1 0.5490 2.1252 1.3970 33 1 2.0700 1.5874 2.1492 34 1 3.8116 -0.3400 1.0558 35 1 5.2612 0.6892 0.9665 36 1 3.8867 1.1748 1.9873 37 1 3.3773 3.4524 -0.5385 38 1 6.0802 2.3007 -0.3021 39 1 5.2410 2.5980 -1.8434 40 1 4.8681 4.8564 -2.6406 41 1 5.6239 7.1984 -2.6096 42 1 7.0118 8.0216 -0.7511 43 1 10.1224 7.9096 3.8375 44 1 6.8698 4.1491 1.0576 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042553725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:59 Heat of formation + Delta-G solvation = -41.370572 kcal Electronic energy + Delta-G solvation = -21101.470118 eV Core-core repulsion = 18017.890908 eV Total energy + Delta-G solvation = -3083.579210 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80741 -39.49643 -38.26869 -35.58041 -34.27527 -32.60451 -31.00934 -30.10901 -29.41440 -27.43631 -26.36097 -25.54460 -23.22522 -22.72574 -22.11417 -20.02889 -19.45172 -18.73907 -16.97817 -16.60699 -16.55419 -16.21030 -16.05830 -16.04303 -15.48890 -15.07892 -14.85164 -14.46031 -14.34651 -14.03796 -13.65863 -13.44449 -13.28934 -13.04116 -13.00915 -12.86344 -12.73477 -12.54785 -12.41937 -12.26701 -12.17794 -12.09729 -11.78079 -11.45172 -11.32083 -11.20404 -11.10783 -10.79227 -9.66439 -9.27841 -8.96509 -8.45899 -6.14661 0.54671 0.76134 1.34651 1.45913 1.51337 2.18501 2.79944 3.11496 3.38503 3.52872 3.83957 3.92695 4.05322 4.13208 4.19502 4.33038 4.38843 4.45905 4.54356 4.59982 4.61552 4.66438 4.75271 4.77354 4.80138 4.83468 5.03209 5.06131 5.10715 5.13675 5.16488 5.21899 5.26078 5.30471 5.32554 5.41676 5.58075 5.65400 5.68534 5.74937 5.79208 6.03896 6.15130 6.27739 6.54457 6.98498 7.80811 8.77473 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029556 B = 0.003119 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.119503 B = 8975.528838 C = 9379.936997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.071 0.929 5 C -0.142 4.142 6 C 0.090 3.910 7 H 0.049 0.951 8 C -0.143 4.143 9 N -0.688 5.688 10 C 0.113 3.887 11 C -0.037 4.037 12 C -0.183 4.183 13 C -0.071 4.071 14 C -0.246 4.246 15 C 0.111 3.889 16 O -0.235 6.235 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.024 4.024 20 N -0.923 5.923 21 Si 1.019 2.981 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.183 4.183 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.052 0.948 37 H 0.345 0.655 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.118 0.882 43 H 0.272 0.728 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.559 -12.117 -10.231 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.089 0.911 5 C -0.200 4.200 6 C -0.019 4.019 7 H 0.067 0.933 8 C -0.201 4.201 9 N -0.320 5.320 10 C -0.016 4.016 11 C -0.037 4.037 12 C -0.202 4.202 13 C -0.089 4.089 14 C -0.265 4.265 15 C 0.061 3.939 16 O -0.142 6.142 17 C -0.490 4.490 18 H 0.119 0.881 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.838 3.162 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.181 1.181 25 C -0.203 4.203 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.164 0.836 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.087 -12.288 -9.216 21.530 hybrid contribution 0.506 0.826 -0.374 1.039 sum -14.581 -11.462 -9.591 20.880 Atomic orbital electron populations 1.21811 0.95340 1.01892 1.01929 1.21576 0.96280 0.95219 1.02313 1.21271 0.93237 0.97250 0.98666 0.91056 1.21820 1.00733 1.00394 0.97018 1.21592 0.94507 0.88095 0.97749 0.93311 1.21903 0.99882 0.99830 0.98482 1.60468 1.04262 1.07898 1.59421 1.20776 0.92126 0.91205 0.97453 1.19587 0.95041 0.96289 0.92804 1.20977 1.05471 0.93523 1.00257 1.21127 0.94847 0.96362 0.96556 1.21302 1.07013 1.00490 0.97734 1.19918 0.91619 0.94054 0.88261 1.83944 1.59443 1.32193 1.38585 1.21789 1.27274 0.87741 1.12225 0.88149 1.26614 0.96139 1.05037 0.94361 1.70189 1.33983 1.39096 1.12835 0.84643 0.78508 0.74247 0.78770 1.18115 1.19619 1.18124 1.20188 1.05840 0.92760 1.01503 0.92231 0.92620 0.92713 0.91641 0.91608 0.93426 0.92198 0.92983 0.90850 0.94148 0.92877 0.83573 0.91227 0.92339 0.83563 0.83647 0.86467 0.91871 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 71.98 0.70 -1.12 16 2 C -0.12 -1.54 4.90 30.59 0.15 -1.39 16 3 C -0.09 -1.38 2.07 -10.79 -0.02 -1.40 16 4 H 0.07 1.10 8.12 -2.39 -0.02 1.08 16 5 C -0.14 -2.65 8.44 71.98 0.61 -2.04 16 6 C 0.09 1.73 2.44 44.92 0.11 1.84 16 7 H 0.05 0.88 7.80 -2.39 -0.02 0.86 16 8 C -0.14 -2.95 8.71 71.98 0.63 -2.33 16 9 N -0.69 -16.74 5.58 -495.56 -2.76 -19.50 16 10 C 0.11 2.99 5.61 85.56 0.48 3.47 16 11 C -0.04 -1.26 5.39 -19.88 -0.11 -1.36 16 12 C -0.18 -5.64 9.70 22.30 0.22 -5.42 16 13 C -0.07 -2.43 10.04 22.25 0.22 -2.21 16 14 C -0.25 -10.95 9.17 22.39 0.21 -10.75 16 15 C 0.11 5.76 6.65 22.58 0.15 5.91 16 16 O -0.23 -14.63 9.76 -22.72 -0.22 -14.85 16 17 C -0.41 -24.76 9.49 67.92 0.64 -24.11 16 18 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 19 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 20 N -0.92 -58.00 13.67 21.61 0.30 -57.71 16 21 Si 1.02 43.65 29.55 68.60 2.03 45.67 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 25 C -0.18 -8.20 9.65 22.39 0.22 -7.99 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.69 6.57 -2.39 -0.02 0.67 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 0.90 6.71 -2.39 -0.02 0.88 16 31 H 0.05 1.06 7.48 -2.38 -0.02 1.04 16 32 H 0.06 0.96 6.57 -2.39 -0.02 0.95 16 33 H 0.05 1.02 6.43 -2.39 -0.02 1.01 16 34 H 0.07 1.20 6.54 -2.39 -0.02 1.19 16 35 H 0.04 0.92 7.45 -2.39 -0.02 0.90 16 36 H 0.05 1.23 6.43 -2.39 -0.02 1.22 16 37 H 0.34 7.89 8.18 -89.70 -0.73 7.16 16 38 H 0.07 1.96 7.38 -2.38 -0.02 1.94 16 39 H 0.06 1.27 8.00 -2.39 -0.02 1.25 16 40 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 42 H 0.12 5.29 5.64 -2.91 -0.02 5.28 16 43 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -70.55 348.68 4.25 -66.30 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.25 Total: 29.94 kcal Atomic # 6 Polarization: -54.52 SS G_CDS: 4.66 Total: -49.85 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -2.47 Total: -77.21 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.22 Total: -14.85 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -70.55 4.25 -66.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042553725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.929 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds