Wall clock time and date at job start Mon Mar 30 2020 01:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46692 * 2 1 4 4 H 1.08996 * 109.47408 * 54.99962 * 3 2 1 5 5 C 1.52999 * 109.47187 * 294.99512 * 3 2 1 6 6 C 1.53006 * 109.46840 * 174.99893 * 3 2 1 7 7 H 1.08996 * 109.47063 * 59.99858 * 6 3 2 8 8 C 1.52999 * 109.46919 * 299.99783 * 6 3 2 9 9 N 1.46904 * 109.47006 * 179.97438 * 6 3 2 10 10 C 1.46898 * 110.99751 * 204.99881 * 9 6 3 11 11 C 1.50703 * 109.47280 * 180.02562 * 10 9 6 12 12 C 1.38324 * 119.96095 * 269.96143 * 11 10 9 13 13 C 1.38279 * 120.13600 * 180.02562 * 12 11 10 14 14 C 1.38121 * 120.06858 * 0.03378 * 13 12 11 15 15 C 1.38860 * 119.93300 * 359.97438 * 14 13 12 16 16 O 1.35754 * 120.07146 * 179.97438 * 15 14 13 17 17 C 1.34826 * 116.99650 * 354.47785 * 16 15 14 18 18 H 1.07998 * 120.00391 * 5.06660 * 17 16 15 19 19 C 1.38661 * 119.99413 * 185.05921 * 17 16 15 20 20 N 1.31553 * 120.00489 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99450 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47360 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47049 * 120.00143 * 21 19 17 24 24 H 1.48504 * 109.46741 * 239.99971 * 21 19 17 25 25 C 1.38071 * 119.96609 * 89.99574 * 11 10 9 26 26 H 1.09003 * 109.47363 * 299.99774 * 1 2 3 27 27 H 1.09000 * 109.46942 * 60.00197 * 1 2 3 28 28 H 1.09000 * 109.46752 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47047 * 239.99494 * 2 1 3 30 30 H 1.09000 * 109.46942 * 119.99803 * 2 1 3 31 31 H 1.08996 * 109.47313 * 300.00508 * 5 3 2 32 32 H 1.08997 * 109.46803 * 60.00842 * 5 3 2 33 33 H 1.09000 * 109.47151 * 180.02562 * 5 3 2 34 34 H 1.09000 * 109.47151 * 60.00377 * 8 6 3 35 35 H 1.09004 * 109.47016 * 180.02562 * 8 6 3 36 36 H 1.08996 * 109.47313 * 299.99921 * 8 6 3 37 37 H 1.00902 * 111.00121 * 328.95072 * 9 6 3 38 38 H 1.09004 * 109.47129 * 59.99946 * 10 9 6 39 39 H 1.08999 * 109.47157 * 299.99933 * 10 9 6 40 40 H 1.07994 * 119.93581 * 359.97438 * 12 11 10 41 41 H 1.08001 * 119.96572 * 180.02562 * 13 12 11 42 42 H 1.08005 * 120.03769 * 179.97438 * 14 13 12 43 43 H 0.96992 * 119.99980 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.03508 * 0.25923 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 1 3.9994 0.9053 -0.7160 8 6 3.9695 0.7604 1.4331 9 7 4.0545 2.8294 0.1251 10 6 5.4450 2.8959 -0.3439 11 6 5.9118 4.3287 -0.3302 12 6 5.7401 5.1219 -1.4504 13 6 6.1676 6.4370 -1.4420 14 6 6.7682 6.9622 -0.3145 15 6 6.9421 6.1685 0.8115 16 8 7.5326 6.6817 1.9209 17 6 8.0302 7.9312 1.8270 18 1 7.8773 8.5071 0.9262 19 6 8.7382 8.4769 2.8870 20 7 8.9248 7.7754 3.9841 21 14 9.4270 10.2085 2.7571 22 1 9.0827 10.7800 1.4304 23 1 8.8429 11.0552 3.8280 24 1 10.9036 10.1664 2.9093 25 6 6.5110 4.8481 0.8001 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0698 1.5875 -2.1491 32 1 0.5489 2.1252 -1.3969 33 1 1.9989 3.1540 -1.3076 34 1 3.6062 -0.2673 1.4331 35 1 5.0558 0.7621 1.5230 36 1 3.5349 1.2994 2.2749 37 1 3.4570 3.4239 -0.4295 38 1 5.5052 2.5034 -1.3590 39 1 6.0791 2.3013 0.3137 40 1 5.2720 4.7132 -2.3336 41 1 6.0318 7.0539 -2.3179 42 1 7.1023 7.9893 -0.3087 43 1 9.4197 8.1573 4.7256 44 1 6.6491 4.2268 1.6727 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042553728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:02 Heat of formation + Delta-G solvation = -23.527894 kcal Electronic energy + Delta-G solvation = -21083.951302 eV Core-core repulsion = 18001.145809 eV Total energy + Delta-G solvation = -3082.805493 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.15630 -38.43428 -36.62196 -34.50368 -32.26101 -31.39527 -29.59221 -29.43436 -28.54660 -25.50407 -24.69985 -24.42036 -21.71007 -21.54188 -20.57741 -19.78761 -17.65509 -16.93610 -16.06671 -15.52890 -15.03917 -14.75597 -14.66447 -14.34538 -13.91296 -13.81951 -13.52246 -13.35716 -13.22334 -12.88390 -12.48504 -12.24736 -12.17843 -12.01046 -11.85677 -11.67696 -11.52031 -11.29177 -11.24939 -10.91300 -10.75452 -10.73209 -10.58527 -10.46556 -10.41944 -10.29634 -9.29012 -8.81637 -8.29687 -8.01745 -7.19455 -6.41089 -4.00035 2.16317 2.40893 3.14368 3.15818 3.21372 3.99424 4.20083 4.60081 4.67829 4.68542 4.80381 5.07444 5.10571 5.17418 5.27168 5.31780 5.34592 5.39521 5.45863 5.60806 5.63442 5.72425 5.74327 5.75957 5.79767 5.85249 5.86411 5.93360 5.98469 6.02750 6.18333 6.21805 6.22086 6.36750 6.41858 6.71149 6.96717 7.11146 7.18669 7.34939 7.38970 7.48243 7.57807 7.86652 8.04154 9.04708 9.76081 10.77205 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030508 B = 0.003099 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.562246 B = 9033.523606 C = 9489.819302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.079 0.921 5 C -0.155 4.155 6 C 0.088 3.912 7 H 0.039 0.961 8 C -0.143 4.143 9 N -0.680 5.680 10 C 0.107 3.893 11 C -0.047 4.047 12 C -0.208 4.208 13 C -0.076 4.076 14 C -0.233 4.233 15 C 0.152 3.848 16 O -0.179 6.179 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.166 4.166 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.342 0.658 38 H 0.031 0.969 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.125 0.875 43 H 0.269 0.731 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.244 -12.260 -9.443 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.113 4.113 4 H 0.098 0.902 5 C -0.212 4.212 6 C -0.022 4.022 7 H 0.057 0.943 8 C -0.201 4.201 9 N -0.313 5.313 10 C -0.021 4.021 11 C -0.048 4.048 12 C -0.227 4.227 13 C -0.094 4.094 14 C -0.253 4.253 15 C 0.099 3.901 16 O -0.083 6.083 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.185 4.185 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.163 0.837 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.916 -12.329 -8.322 19.059 hybrid contribution 0.280 0.864 -1.081 1.412 sum -11.635 -11.465 -9.403 18.848 Atomic orbital electron populations 1.21822 0.95959 1.01345 1.01938 1.21619 0.95793 0.96223 1.02138 1.21329 0.94853 0.96425 0.98708 0.90230 1.21952 1.01585 1.00578 0.97079 1.21541 0.93723 0.89593 0.97351 0.94261 1.21867 1.01544 0.99121 0.97540 1.60569 1.02862 1.08160 1.59745 1.20829 0.89731 0.93849 0.97726 1.19173 0.97902 0.94277 0.93447 1.20413 1.09198 0.94998 0.98133 1.20681 0.97042 0.94827 0.96878 1.21179 1.08306 1.01266 0.94506 1.19365 0.91708 0.92135 0.86927 1.83985 1.63754 1.31173 1.29344 1.21363 1.33765 0.88384 1.03187 0.89099 1.25280 0.96576 0.99995 0.94709 1.70048 1.38392 1.36986 1.04410 0.85658 0.78715 0.80421 0.78688 1.19151 1.20167 1.20182 1.20019 1.06254 0.93510 0.98758 0.92685 0.92618 0.93012 0.92253 0.91392 0.92942 0.92169 0.92320 0.92647 0.92720 0.91894 0.83658 0.95057 0.90581 0.88156 0.87624 0.85683 0.92127 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -0.95 5.19 -26.73 -0.14 -1.09 16 3 C -0.09 -0.88 2.11 -90.62 -0.19 -1.07 16 4 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 5 C -0.15 -1.35 8.71 37.16 0.32 -1.03 16 6 C 0.09 0.96 2.23 -67.71 -0.15 0.81 16 7 H 0.04 0.43 7.80 -51.93 -0.40 0.02 16 8 C -0.14 -1.56 9.07 37.16 0.34 -1.23 16 9 N -0.68 -9.19 6.30 -107.99 -0.68 -9.87 16 10 C 0.11 1.57 5.61 -4.98 -0.03 1.55 16 11 C -0.05 -0.86 5.39 -104.65 -0.56 -1.43 16 12 C -0.21 -3.64 9.70 -39.53 -0.38 -4.03 16 13 C -0.08 -1.43 10.04 -39.61 -0.40 -1.82 16 14 C -0.23 -5.19 9.17 -39.39 -0.36 -5.55 16 15 C 0.15 3.77 6.65 -39.10 -0.26 3.51 16 16 O -0.18 -5.21 9.76 0.05 0.00 -5.21 16 17 C -0.39 -11.10 9.49 30.89 0.29 -10.80 16 18 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -25.67 13.67 55.48 0.76 -24.91 16 21 Si 0.94 20.79 29.55 -169.99 -5.02 15.77 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 C -0.17 -3.61 9.64 -39.40 -0.38 -3.99 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.39 6.56 -51.93 -0.34 0.05 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.54 6.17 -51.93 -0.32 0.21 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 33 H 0.06 0.55 6.21 -51.93 -0.32 0.23 16 34 H 0.05 0.50 6.32 -51.93 -0.33 0.17 16 35 H 0.05 0.64 7.45 -51.93 -0.39 0.25 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.34 4.50 6.16 -39.29 -0.24 4.25 16 38 H 0.03 0.42 8.00 -51.93 -0.42 0.00 16 39 H 0.08 1.12 7.38 -51.93 -0.38 0.74 16 40 H 0.10 1.49 8.06 -52.49 -0.42 1.06 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.13 2.79 5.64 -52.48 -0.30 2.49 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.12 2.54 8.06 -52.49 -0.42 2.11 16 LS Contribution 349.55 15.07 5.27 5.27 Total: -1.00 -30.26 349.55 -8.31 -38.57 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.99 Total: 6.34 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -1.64 Total: -25.95 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.08 Total: -34.79 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: 0.00 Total: -5.21 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.26 -8.31 -38.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042553728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.038 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds