Wall clock time and date at job start Mon Mar 30 2020 01:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 H 1.08998 * 109.47429 * 55.23661 * 3 2 1 5 5 N 1.46905 * 109.46998 * 295.23575 * 3 2 1 6 6 C 1.46897 * 110.99780 * 107.18642 * 5 3 2 7 7 C 1.50699 * 109.47259 * 175.27612 * 6 5 3 8 8 C 1.38320 * 119.96473 * 269.72177 * 7 6 5 9 9 C 1.38276 * 120.13976 * 179.76174 * 8 7 6 10 10 C 1.38122 * 120.06784 * 0.51272 * 9 8 7 11 11 C 1.38856 * 119.92872 * 359.74606 * 10 9 8 12 12 O 1.35754 * 120.06585 * 179.97438 * 11 10 9 13 13 C 1.34827 * 117.00271 * 5.87331 * 12 11 10 14 14 H 1.08001 * 120.00128 * 5.42021 * 13 12 11 15 15 C 1.38650 * 120.00137 * 185.42561 * 13 12 11 16 16 N 1.31562 * 119.99994 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00143 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46956 * 89.99971 * 17 15 13 19 19 H 1.48491 * 109.47231 * 210.00020 * 17 15 13 20 20 H 1.48499 * 109.46955 * 329.99978 * 17 15 13 21 21 C 1.38075 * 119.96586 * 89.99793 * 7 6 5 22 22 C 1.52995 * 109.46919 * 175.23856 * 3 2 1 23 23 C 1.53001 * 109.47362 * 299.99915 * 22 3 2 24 24 C 1.53003 * 109.47577 * 59.99952 * 22 3 2 25 25 H 1.08997 * 109.47557 * 182.66652 * 1 2 3 26 26 H 1.09006 * 109.46904 * 62.66464 * 1 2 3 27 27 H 1.08999 * 109.46577 * 302.67019 * 1 2 3 28 28 H 1.08997 * 109.46846 * 120.00196 * 2 1 3 29 29 H 1.09001 * 109.46561 * 239.99710 * 2 1 3 30 30 H 1.00892 * 111.00199 * 343.23182 * 5 3 2 31 31 H 1.09004 * 109.47106 * 295.27182 * 6 5 3 32 32 H 1.08998 * 109.47469 * 55.26927 * 6 5 3 33 33 H 1.08006 * 119.93271 * 0.02562 * 8 7 6 34 34 H 1.08006 * 119.97057 * 180.25636 * 9 8 7 35 35 H 1.08006 * 120.03446 * 179.76078 * 10 9 8 36 36 H 0.97001 * 119.99684 * 179.97438 * 16 15 13 37 37 H 1.07996 * 120.04052 * 359.95588 * 21 7 6 38 38 H 1.09004 * 109.47358 * 179.97438 * 22 3 2 39 39 H 1.08995 * 109.46852 * 59.99888 * 23 22 3 40 40 H 1.09001 * 109.47280 * 180.02562 * 23 22 3 41 41 H 1.08998 * 109.46758 * 300.00056 * 23 22 3 42 42 H 1.09001 * 109.47566 * 179.97438 * 24 22 3 43 43 H 1.09004 * 109.46801 * 300.00371 * 24 22 3 44 44 H 1.08999 * 109.47110 * 59.99401 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6088 1.9804 0.8442 5 7 1.6466 2.1009 -1.2529 6 6 0.5699 3.0730 -1.0210 7 6 0.2733 3.8093 -2.3020 8 6 0.9462 4.9812 -2.5969 9 6 0.6805 5.6572 -3.7736 10 6 -0.2658 5.1692 -4.6534 11 6 -0.9468 3.9958 -4.3577 12 8 -1.8778 3.5139 -5.2203 13 6 -2.0079 4.1529 -6.4003 14 1 -1.3284 4.9512 -6.6599 15 6 -3.0140 3.7853 -7.2806 16 7 -3.1412 4.4092 -8.4319 17 14 -4.1891 2.4041 -6.8320 18 1 -5.3623 2.9656 -6.1153 19 1 -4.6451 1.7208 -8.0689 20 1 -3.4938 1.4281 -5.9550 21 6 -0.6738 3.3163 -3.1774 22 6 3.5653 1.4440 0.1197 23 6 3.9753 0.7582 1.4245 24 6 4.1708 0.6890 -1.0653 25 1 -0.3634 -1.0265 0.0478 26 1 -0.3633 0.4719 -0.9130 27 1 -0.3632 0.5548 0.8651 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.3772 1.4222 -1.9490 31 1 -0.3262 2.5498 -0.6869 32 1 0.8813 3.7847 -0.2565 33 1 1.6838 5.3670 -1.9086 34 1 1.2105 6.5698 -4.0030 35 1 -0.4757 5.6996 -5.5705 36 1 -3.8449 4.1517 -9.0479 37 1 -1.2016 2.4032 -2.9450 38 1 3.9288 2.4717 0.1193 39 1 3.6119 -0.2694 1.4245 40 1 5.0619 0.7597 1.5100 41 1 3.5440 1.2961 2.2687 42 1 5.2575 0.6905 -0.9802 43 1 3.8074 -0.3387 -1.0653 44 1 3.8788 1.1776 -1.9949 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042585895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:15 Heat of formation + Delta-G solvation = -22.671041 kcal Electronic energy + Delta-G solvation = -21463.450292 eV Core-core repulsion = 18380.681955 eV Total energy + Delta-G solvation = -3082.768337 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.33560 -38.60148 -36.73468 -34.03226 -32.38857 -32.15549 -30.16251 -29.16791 -27.24324 -26.23667 -25.16671 -23.79301 -22.60298 -21.63356 -20.51640 -19.10662 -17.68643 -17.12082 -15.81135 -15.45728 -15.29308 -15.12630 -14.66046 -14.26040 -14.05369 -13.92373 -13.66824 -13.47026 -12.88417 -12.62682 -12.60077 -12.40682 -12.28508 -12.07960 -11.92830 -11.73519 -11.72456 -11.28131 -10.99719 -10.97011 -10.85777 -10.76870 -10.73897 -10.48926 -10.35939 -10.12186 -9.39780 -8.86127 -8.34748 -8.08343 -7.34134 -6.40130 -4.06885 2.05636 2.31604 3.21953 3.25608 3.40066 4.16326 4.24361 4.58170 4.62728 4.76105 4.84870 4.97589 5.06217 5.10886 5.13689 5.21536 5.29988 5.43655 5.46313 5.54243 5.57579 5.68834 5.73792 5.75323 5.80358 5.84755 5.88462 5.92151 5.97451 6.09681 6.12138 6.16218 6.27781 6.31898 6.37710 6.55842 6.81434 7.11808 7.14294 7.28095 7.34881 7.49013 7.63373 7.82163 8.06022 8.95506 9.58623 10.67865 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022440 B = 0.003845 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.447485 B = 7281.145869 C = 7994.674888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.150 4.150 3 C 0.091 3.909 4 H 0.067 0.933 5 N -0.676 5.676 6 C 0.105 3.895 7 C -0.047 4.047 8 C -0.180 4.180 9 C -0.079 4.079 10 C -0.218 4.218 11 C 0.158 3.842 12 O -0.220 6.220 13 C -0.388 4.388 14 H 0.105 0.895 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.260 1.260 21 C -0.185 4.185 22 C -0.082 4.082 23 C -0.150 4.150 24 C -0.144 4.144 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.345 0.655 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.279 0.721 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.048 0.952 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.331 -6.740 17.596 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.189 4.189 3 C -0.019 4.019 4 H 0.085 0.915 5 N -0.307 5.307 6 C -0.024 4.024 7 C -0.047 4.047 8 C -0.200 4.200 9 C -0.097 4.097 10 C -0.238 4.238 11 C 0.106 3.894 12 O -0.126 6.126 13 C -0.464 4.464 14 H 0.123 0.877 15 C -0.140 4.140 16 N -0.520 5.520 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.184 1.184 21 C -0.205 4.205 22 C -0.101 4.101 23 C -0.208 4.208 24 C -0.202 4.202 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.164 0.836 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.535 -6.445 17.429 21.361 hybrid contribution -1.307 -0.946 0.012 1.614 sum 9.227 -7.392 17.441 21.071 Atomic orbital electron populations 1.21876 0.95933 1.01760 1.02013 1.22261 0.95889 0.97941 1.02797 1.21638 0.95111 0.92823 0.92359 0.91521 1.60521 1.41043 1.19851 1.09286 1.20917 0.92451 0.94135 0.94870 1.19181 0.95510 0.95106 0.94918 1.20478 1.03302 0.97529 0.98668 1.20803 0.96550 0.98552 0.93806 1.21308 1.01316 0.98637 1.02519 1.19057 0.89221 0.91651 0.89445 1.83580 1.50238 1.52565 1.26181 1.20750 1.16742 1.18788 0.90101 0.87719 1.24457 0.96950 0.98123 0.94489 1.69651 1.33336 1.40643 1.08333 0.86188 0.80673 0.81946 0.78119 1.19958 1.20796 1.18425 1.20010 1.03446 1.02056 0.94971 1.21076 0.94542 1.00015 0.94509 1.21937 1.00970 1.00637 0.97275 1.21802 0.99510 0.99768 0.99078 0.92683 0.92439 0.92849 0.91239 0.91216 0.83620 0.94578 0.90777 0.87498 0.87270 0.85088 0.91103 0.87057 0.90934 0.92585 0.92850 0.93048 0.93599 0.93248 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.06 37.16 0.34 -1.16 16 2 C -0.15 -1.34 4.50 -26.73 -0.12 -1.46 16 3 C 0.09 0.89 2.03 -67.71 -0.14 0.75 16 4 H 0.07 0.66 7.51 -51.93 -0.39 0.27 16 5 N -0.68 -8.13 5.28 -107.99 -0.57 -8.70 16 6 C 0.10 1.38 5.26 -4.98 -0.03 1.35 16 7 C -0.05 -0.78 5.43 -104.65 -0.57 -1.35 16 8 C -0.18 -3.07 9.70 -39.54 -0.38 -3.45 16 9 C -0.08 -1.45 10.04 -39.61 -0.40 -1.85 16 10 C -0.22 -4.77 9.13 -39.40 -0.36 -5.13 16 11 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 12 O -0.22 -5.84 8.59 0.04 0.00 -5.84 16 13 C -0.39 -11.02 9.90 30.88 0.31 -10.71 16 14 H 0.11 3.04 5.53 -52.49 -0.29 2.75 16 15 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 16 N -0.88 -25.64 13.96 55.48 0.77 -24.86 16 17 Si 0.91 21.79 28.62 -169.99 -4.86 16.92 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 21 C -0.18 -3.64 9.65 -39.40 -0.38 -4.02 16 22 C -0.08 -0.76 2.94 -90.62 -0.27 -1.03 16 23 C -0.15 -1.16 8.85 37.16 0.33 -0.83 16 24 C -0.14 -1.38 8.68 37.16 0.32 -1.06 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.62 6.49 -51.93 -0.34 0.28 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.55 6.19 -51.93 -0.32 0.23 16 29 H 0.07 0.64 6.62 -51.93 -0.34 0.30 16 30 H 0.34 4.36 7.71 -39.30 -0.30 4.06 16 31 H 0.04 0.46 6.60 -51.93 -0.34 0.12 16 32 H 0.07 0.91 7.96 -51.93 -0.41 0.50 16 33 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 34 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.13 3.01 5.72 -52.48 -0.30 2.71 16 36 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.41 6.33 -51.93 -0.33 0.08 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.44 6.54 -51.93 -0.34 0.10 16 44 H 0.07 0.76 7.60 -51.93 -0.39 0.36 16 LS Contribution 347.21 15.07 5.23 5.23 Total: -1.00 -28.65 347.21 -8.17 -36.82 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.04 Total: 5.28 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -1.70 Total: -24.86 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.20 Total: -33.56 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: 0.00 Total: -5.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.86 Total: 16.92 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.65 -8.17 -36.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042585895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.154 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds