Wall clock time and date at job start Mon Mar 30 2020 01:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 H 1.08998 * 109.47429 * 55.23661 * 3 2 1 5 5 N 1.46905 * 109.46998 * 295.23575 * 3 2 1 6 6 C 1.46897 * 110.99780 * 107.18642 * 5 3 2 7 7 C 1.50699 * 109.47259 * 175.27612 * 6 5 3 8 8 C 1.38320 * 119.96473 * 269.72177 * 7 6 5 9 9 C 1.38276 * 120.13976 * 179.76174 * 8 7 6 10 10 C 1.38122 * 120.06784 * 0.51272 * 9 8 7 11 11 C 1.38856 * 119.92872 * 359.74606 * 10 9 8 12 12 O 1.35754 * 120.06585 * 179.97438 * 11 10 9 13 13 C 1.34827 * 117.00271 * 5.87331 * 12 11 10 14 14 H 1.08001 * 120.00128 * 5.42021 * 13 12 11 15 15 C 1.38650 * 120.00137 * 185.42561 * 13 12 11 16 16 N 1.31562 * 119.99994 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00143 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46956 * 89.99971 * 17 15 13 19 19 H 1.48491 * 109.47231 * 210.00020 * 17 15 13 20 20 H 1.48499 * 109.46955 * 329.99978 * 17 15 13 21 21 C 1.38075 * 119.96586 * 89.99793 * 7 6 5 22 22 C 1.52995 * 109.46919 * 175.23856 * 3 2 1 23 23 C 1.53001 * 109.47362 * 299.99915 * 22 3 2 24 24 C 1.53003 * 109.47577 * 59.99952 * 22 3 2 25 25 H 1.08997 * 109.47557 * 182.66652 * 1 2 3 26 26 H 1.09006 * 109.46904 * 62.66464 * 1 2 3 27 27 H 1.08999 * 109.46577 * 302.67019 * 1 2 3 28 28 H 1.08997 * 109.46846 * 120.00196 * 2 1 3 29 29 H 1.09001 * 109.46561 * 239.99710 * 2 1 3 30 30 H 1.00892 * 111.00199 * 343.23182 * 5 3 2 31 31 H 1.09004 * 109.47106 * 295.27182 * 6 5 3 32 32 H 1.08998 * 109.47469 * 55.26927 * 6 5 3 33 33 H 1.08006 * 119.93271 * 0.02562 * 8 7 6 34 34 H 1.08006 * 119.97057 * 180.25636 * 9 8 7 35 35 H 1.08006 * 120.03446 * 179.76078 * 10 9 8 36 36 H 0.97001 * 119.99684 * 179.97438 * 16 15 13 37 37 H 1.07996 * 120.04052 * 359.95588 * 21 7 6 38 38 H 1.09004 * 109.47358 * 179.97438 * 22 3 2 39 39 H 1.08995 * 109.46852 * 59.99888 * 23 22 3 40 40 H 1.09001 * 109.47280 * 180.02562 * 23 22 3 41 41 H 1.08998 * 109.46758 * 300.00056 * 23 22 3 42 42 H 1.09001 * 109.47566 * 179.97438 * 24 22 3 43 43 H 1.09004 * 109.46801 * 300.00371 * 24 22 3 44 44 H 1.08999 * 109.47110 * 59.99401 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6088 1.9804 0.8442 5 7 1.6466 2.1009 -1.2529 6 6 0.5699 3.0730 -1.0210 7 6 0.2733 3.8093 -2.3020 8 6 0.9462 4.9812 -2.5969 9 6 0.6805 5.6572 -3.7736 10 6 -0.2658 5.1692 -4.6534 11 6 -0.9468 3.9958 -4.3577 12 8 -1.8778 3.5139 -5.2203 13 6 -2.0079 4.1529 -6.4003 14 1 -1.3284 4.9512 -6.6599 15 6 -3.0140 3.7853 -7.2806 16 7 -3.1412 4.4092 -8.4319 17 14 -4.1891 2.4041 -6.8320 18 1 -5.3623 2.9656 -6.1153 19 1 -4.6451 1.7208 -8.0689 20 1 -3.4938 1.4281 -5.9550 21 6 -0.6738 3.3163 -3.1774 22 6 3.5653 1.4440 0.1197 23 6 3.9753 0.7582 1.4245 24 6 4.1708 0.6890 -1.0653 25 1 -0.3634 -1.0265 0.0478 26 1 -0.3633 0.4719 -0.9130 27 1 -0.3632 0.5548 0.8651 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.3772 1.4222 -1.9490 31 1 -0.3262 2.5498 -0.6869 32 1 0.8813 3.7847 -0.2565 33 1 1.6838 5.3670 -1.9086 34 1 1.2105 6.5698 -4.0030 35 1 -0.4757 5.6996 -5.5705 36 1 -3.8449 4.1517 -9.0479 37 1 -1.2016 2.4032 -2.9450 38 1 3.9288 2.4717 0.1193 39 1 3.6119 -0.2694 1.4245 40 1 5.0619 0.7597 1.5100 41 1 3.5440 1.2961 2.2687 42 1 5.2575 0.6905 -0.9802 43 1 3.8074 -0.3387 -1.0653 44 1 3.8788 1.1776 -1.9949 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042585895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:14 Heat of formation + Delta-G solvation = -38.475496 kcal Electronic energy + Delta-G solvation = -21464.135625 eV Core-core repulsion = 18380.681955 eV Total energy + Delta-G solvation = -3083.453670 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.92884 -39.61628 -38.31392 -35.05683 -34.44079 -33.04951 -31.51153 -30.72127 -27.93933 -27.46532 -26.93997 -24.89071 -23.32779 -23.18717 -22.10084 -19.96219 -19.60283 -18.80906 -16.95608 -16.82971 -16.42058 -16.17879 -16.00688 -15.71096 -15.58541 -15.23882 -14.84533 -14.60341 -14.35300 -14.17663 -13.88975 -13.69918 -13.23780 -13.05809 -12.93586 -12.89441 -12.66160 -12.51283 -12.47746 -12.37398 -12.22856 -11.93706 -11.69309 -11.59060 -11.49107 -11.23533 -11.12018 -10.91205 -9.72328 -9.17449 -9.05188 -8.50489 -6.23131 0.50821 0.71515 1.30010 1.34413 1.50650 2.27246 2.73519 3.03335 3.10446 3.48094 3.85034 3.96476 4.06259 4.11179 4.22543 4.32499 4.37350 4.44071 4.47091 4.55556 4.62389 4.69060 4.74005 4.75173 4.82194 4.91535 4.96441 5.01733 5.07745 5.16202 5.17822 5.25556 5.27085 5.39684 5.40705 5.41138 5.59938 5.62422 5.68824 5.76776 5.78978 5.92122 6.19639 6.28867 6.50258 6.84081 7.59184 8.61506 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022440 B = 0.003845 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.447485 B = 7281.145869 C = 7994.674888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.145 4.145 3 C 0.093 3.907 4 H 0.073 0.927 5 N -0.682 5.682 6 C 0.111 3.889 7 C -0.036 4.036 8 C -0.162 4.162 9 C -0.078 4.078 10 C -0.239 4.239 11 C 0.119 3.881 12 O -0.246 6.246 13 C -0.398 4.398 14 H 0.079 0.921 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.971 3.029 18 H -0.266 1.266 19 H -0.266 1.266 20 H -0.263 1.263 21 C -0.184 4.184 22 C -0.080 4.080 23 C -0.147 4.147 24 C -0.142 4.142 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.340 0.660 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.105 0.895 36 H 0.285 0.715 37 H 0.120 0.880 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.462 -7.832 20.911 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.183 4.183 3 C -0.016 4.016 4 H 0.091 0.909 5 N -0.312 5.312 6 C -0.018 4.018 7 C -0.037 4.037 8 C -0.180 4.180 9 C -0.096 4.096 10 C -0.259 4.259 11 C 0.071 3.929 12 O -0.154 6.154 13 C -0.474 4.474 14 H 0.096 0.904 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.793 3.207 18 H -0.191 1.191 19 H -0.191 1.191 20 H -0.187 1.187 21 C -0.203 4.203 22 C -0.099 4.099 23 C -0.204 4.204 24 C -0.199 4.199 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.701 -7.526 20.782 25.009 hybrid contribution -1.401 -0.523 -0.789 1.691 sum 10.300 -8.049 19.993 23.887 Atomic orbital electron populations 1.21866 0.96272 1.02026 1.01352 1.22209 0.95470 0.97387 1.03264 1.21679 0.95445 0.93200 0.91297 0.90924 1.60523 1.40273 1.20033 1.10399 1.20909 0.93404 0.94605 0.92863 1.19636 0.93553 0.94965 0.95509 1.20968 1.02484 0.96588 0.98008 1.21128 0.95401 0.99533 0.93525 1.21317 1.03007 0.98837 1.02708 1.19603 0.89710 0.93072 0.90543 1.83516 1.52399 1.53461 1.26060 1.20681 1.16705 1.18484 0.91560 0.90392 1.25282 0.98597 1.00657 0.94338 1.69736 1.34700 1.42660 1.09485 0.85214 0.78406 0.78783 0.78280 1.19115 1.19111 1.18717 1.20273 1.03934 1.02098 0.94034 1.21048 0.94021 0.99607 0.95211 1.21898 1.01345 1.00801 0.96377 1.21772 0.99911 0.99912 0.98343 0.92182 0.94019 0.92370 0.89813 0.91673 0.84162 0.93817 0.88898 0.83890 0.84412 0.87666 0.90582 0.86186 0.91904 0.92004 0.92433 0.92425 0.93112 0.92712 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.06 71.98 0.65 -1.93 16 2 C -0.14 -2.17 4.50 30.60 0.14 -2.03 16 3 C 0.09 1.54 2.03 44.91 0.09 1.63 16 4 H 0.07 1.15 7.51 -2.39 -0.02 1.13 16 5 N -0.68 -14.51 5.28 -495.59 -2.61 -17.12 16 6 C 0.11 2.53 5.26 85.56 0.45 2.98 16 7 C -0.04 -1.12 5.43 -19.88 -0.11 -1.23 16 8 C -0.16 -4.95 9.70 22.30 0.22 -4.74 16 9 C -0.08 -2.75 10.04 22.25 0.22 -2.53 16 10 C -0.24 -10.78 9.13 22.39 0.20 -10.58 16 11 C 0.12 5.69 6.65 22.58 0.15 5.84 16 12 O -0.25 -13.63 8.59 -22.76 -0.20 -13.83 16 13 C -0.40 -23.88 9.90 67.92 0.67 -23.21 16 14 H 0.08 4.92 5.53 -2.91 -0.02 4.91 16 15 C 0.01 0.55 5.49 84.83 0.47 1.02 16 16 N -0.92 -56.00 13.96 21.61 0.30 -55.70 16 17 Si 0.97 45.97 28.62 68.60 1.96 47.93 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 21 C -0.18 -7.10 9.65 22.39 0.22 -6.88 16 22 C -0.08 -1.25 2.94 -10.79 -0.03 -1.29 16 23 C -0.15 -1.78 8.85 71.98 0.64 -1.14 16 24 C -0.14 -2.42 8.68 71.98 0.63 -1.80 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.04 0.81 6.49 -2.38 -0.02 0.79 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 1.04 6.19 -2.39 -0.01 1.03 16 29 H 0.06 1.05 6.62 -2.39 -0.02 1.04 16 30 H 0.34 7.93 7.71 -89.70 -0.69 7.23 16 31 H 0.04 0.96 6.60 -2.38 -0.02 0.95 16 32 H 0.09 1.84 7.96 -2.39 -0.02 1.82 16 33 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 35 H 0.11 5.23 5.72 -2.91 -0.02 5.21 16 36 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 37 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 38 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.06 0.69 6.33 -2.39 -0.02 0.67 16 40 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.05 0.86 6.54 -2.38 -0.02 0.85 16 44 H 0.05 1.01 7.60 -2.39 -0.02 0.99 16 Total: -1.00 -64.76 347.21 4.35 -60.41 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.29 Total: 24.21 kcal Atomic # 6 Polarization: -50.50 SS G_CDS: 4.60 Total: -45.89 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -2.31 Total: -72.82 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.20 Total: -13.83 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.96 Total: 47.93 kcal Total: -64.76 4.35 -60.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042585895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.931 kcal (2) G-P(sol) polarization free energy of solvation -64.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds