Wall clock time and date at job start Mon Mar 30 2020 01:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47156 * 2 1 4 4 H 1.08992 * 109.47261 * 305.61860 * 3 2 1 5 5 N 1.46901 * 109.47244 * 65.62037 * 3 2 1 6 6 C 1.46895 * 111.00093 * 252.22958 * 5 3 2 7 7 C 1.50700 * 109.47294 * 180.40127 * 6 5 3 8 8 C 1.38325 * 119.96553 * 269.95978 * 7 6 5 9 9 C 1.38281 * 120.13713 * 179.97438 * 8 7 6 10 10 C 1.38117 * 120.06928 * 0.04118 * 9 8 7 11 11 C 1.38860 * 119.93098 * 359.97438 * 10 9 8 12 12 O 1.35750 * 120.06546 * 179.97438 * 11 10 9 13 13 C 1.34823 * 117.00543 * 354.47837 * 12 11 10 14 14 H 1.08001 * 119.99823 * 5.10670 * 13 12 11 15 15 C 1.38653 * 120.00390 * 185.10127 * 13 12 11 16 16 N 1.31561 * 119.99620 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00188 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46792 * 60.00329 * 17 15 13 19 19 H 1.48506 * 109.46940 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47355 * 300.00046 * 17 15 13 21 21 C 1.38073 * 119.96483 * 90.00073 * 7 6 5 22 22 C 1.53007 * 109.47175 * 185.61795 * 3 2 1 23 23 C 1.53002 * 109.47143 * 305.00472 * 22 3 2 24 24 C 1.53004 * 109.46657 * 65.00132 * 22 3 2 25 25 H 1.08998 * 109.47200 * 297.40502 * 1 2 3 26 26 H 1.09006 * 109.46763 * 57.40348 * 1 2 3 27 27 H 1.08996 * 109.47236 * 177.39745 * 1 2 3 28 28 H 1.09003 * 109.47220 * 240.00135 * 2 1 3 29 29 H 1.09001 * 109.47304 * 120.00171 * 2 1 3 30 30 H 1.00903 * 111.00005 * 128.26888 * 5 3 2 31 31 H 1.09000 * 109.46970 * 60.40087 * 6 5 3 32 32 H 1.08998 * 109.47019 * 300.40305 * 6 5 3 33 33 H 1.07998 * 119.92755 * 359.97438 * 8 7 6 34 34 H 1.07998 * 119.96213 * 180.02562 * 9 8 7 35 35 H 1.07996 * 120.03310 * 180.02562 * 10 9 8 36 36 H 0.96997 * 119.99710 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.03750 * 0.25512 * 21 7 6 38 38 H 1.08999 * 109.47116 * 184.99729 * 22 3 2 39 39 H 1.09002 * 109.46648 * 299.99617 * 23 22 3 40 40 H 1.09000 * 109.47303 * 59.99295 * 23 22 3 41 41 H 1.08997 * 109.46788 * 180.02562 * 23 22 3 42 42 H 1.08998 * 109.47392 * 60.00282 * 24 22 3 43 43 H 1.09002 * 109.46581 * 180.02562 * 24 22 3 44 44 H 1.08999 * 109.47029 * 299.99650 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5968 1.9845 -0.8353 5 7 1.6642 2.0948 1.2615 6 6 0.5939 3.0779 1.0474 7 6 0.2428 3.7319 2.3589 8 6 -0.7395 3.1830 3.1635 9 6 -1.0641 3.7799 4.3679 10 6 -0.4086 4.9270 4.7707 11 6 0.5776 5.4805 3.9651 12 8 1.2232 6.6082 4.3580 13 6 0.7825 7.2052 5.4836 14 1 0.0063 6.7401 6.0732 15 6 1.3258 8.4163 5.8844 16 7 2.2710 8.9831 5.1660 17 14 0.7146 9.2438 7.4436 18 1 0.9453 8.3458 8.6036 19 1 1.4511 10.5168 7.6496 20 1 -0.7378 9.5264 7.3174 21 6 0.9013 4.8787 2.7558 22 6 3.5635 1.4448 -0.1412 23 6 4.1791 0.5800 0.9606 24 6 3.9496 0.8789 -1.5093 25 1 -0.3633 0.4730 0.9123 26 1 -0.3633 0.5537 -0.8659 27 1 -0.3633 -1.0266 -0.0467 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.4658 2.5226 1.7002 31 1 -0.2857 2.5755 0.6450 32 1 0.9333 3.8367 0.3424 33 1 -1.2538 2.2865 2.8504 34 1 -1.8312 3.3488 4.9941 35 1 -0.6624 5.3924 5.7116 36 1 2.6513 9.8301 5.4465 37 1 1.6648 5.3095 2.1249 38 1 3.9351 2.4656 -0.0523 39 1 3.9040 0.9832 1.9352 40 1 3.8074 -0.4408 0.8716 41 1 5.2645 0.5820 0.8602 42 1 3.5111 1.4950 -2.2943 43 1 5.0350 0.8802 -1.6097 44 1 3.5780 -0.1419 -1.5983 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042585898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:18 Heat of formation + Delta-G solvation = -24.287349 kcal Electronic energy + Delta-G solvation = -21365.362826 eV Core-core repulsion = 18282.524400 eV Total energy + Delta-G solvation = -3082.838426 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.19890 -38.48302 -36.57007 -33.85078 -32.28254 -32.13401 -30.12415 -28.95228 -27.31486 -26.14207 -25.23848 -23.67759 -22.29096 -21.54196 -20.64731 -19.25272 -17.58685 -16.94466 -15.79061 -15.41176 -15.11613 -14.96535 -14.44224 -14.40067 -13.96620 -13.87771 -13.52295 -13.31188 -13.06251 -12.62955 -12.43574 -12.37310 -12.30443 -11.89485 -11.78716 -11.61636 -11.54116 -11.23175 -11.09081 -10.91009 -10.75094 -10.62636 -10.54857 -10.48067 -10.44797 -10.24847 -9.31714 -8.81416 -8.30694 -8.00699 -7.19404 -6.42410 -4.01742 2.14332 2.42874 3.14416 3.15536 3.18156 3.98502 4.25476 4.63880 4.69695 4.71031 5.01339 5.09642 5.16508 5.22585 5.24646 5.35395 5.40715 5.50360 5.54873 5.63366 5.69467 5.71946 5.78233 5.80833 5.89215 5.91065 5.94381 6.00853 6.05646 6.18242 6.22708 6.23228 6.35120 6.37312 6.41432 6.69772 6.94574 7.09903 7.19445 7.32184 7.42467 7.46378 7.56962 7.86274 8.02631 9.03416 9.74179 10.75797 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025532 B = 0.003504 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.415714 B = 7988.911363 C = 8734.190813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.089 3.911 4 H 0.053 0.947 5 N -0.676 5.676 6 C 0.105 3.895 7 C -0.046 4.046 8 C -0.188 4.188 9 C -0.078 4.078 10 C -0.232 4.232 11 C 0.153 3.847 12 O -0.180 6.180 13 C -0.392 4.392 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.865 5.865 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.185 4.185 22 C -0.109 4.109 23 C -0.146 4.146 24 C -0.146 4.146 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.344 0.656 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.270 0.730 37 H 0.112 0.888 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 -15.080 -9.675 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.020 4.020 4 H 0.071 0.929 5 N -0.308 5.308 6 C -0.023 4.023 7 C -0.047 4.047 8 C -0.208 4.208 9 C -0.096 4.096 10 C -0.251 4.251 11 C 0.099 3.901 12 O -0.084 6.084 13 C -0.468 4.468 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.500 5.500 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.205 4.205 22 C -0.128 4.128 23 C -0.203 4.203 24 C -0.203 4.203 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.164 0.836 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.678 -15.227 -9.580 18.003 hybrid contribution 0.130 1.206 0.445 1.292 sum -0.548 -14.021 -9.134 16.743 Atomic orbital electron populations 1.21758 0.96139 1.00707 1.02072 1.21622 0.95888 0.95902 1.01424 1.21657 0.93349 0.95708 0.91334 0.92917 1.60580 1.13076 1.33755 1.23406 1.20932 0.95099 0.92512 0.93800 1.19190 0.96076 0.94071 0.95329 1.20403 1.02149 1.01675 0.96540 1.20743 0.98131 0.94925 0.95789 1.21179 1.01863 0.99626 1.02436 1.19307 0.90565 0.87906 0.92282 1.83972 1.50610 1.32630 1.41216 1.21264 1.22037 1.03888 0.99637 0.89196 1.25267 0.96195 0.95665 0.99360 1.70031 1.24562 1.17532 1.37893 0.85798 0.78862 0.78619 0.80247 1.19521 1.20306 1.19531 1.20029 1.05081 0.98788 0.96642 1.21508 0.95376 1.00053 0.95914 1.21851 0.99698 1.00024 0.98745 1.21861 1.01098 1.01151 0.96231 0.91495 0.93712 0.93614 0.92450 0.91229 0.83607 0.90547 0.94959 0.87691 0.87563 0.85717 0.92047 0.87027 0.91327 0.91828 0.92297 0.93244 0.92896 0.92762 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.08 37.15 0.34 -1.17 16 2 C -0.11 -1.09 4.80 -26.73 -0.13 -1.22 16 3 C 0.09 0.95 1.97 -67.71 -0.13 0.82 16 4 H 0.05 0.58 7.57 -51.93 -0.39 0.19 16 5 N -0.68 -8.73 5.71 -107.99 -0.62 -9.35 16 6 C 0.10 1.50 5.22 -4.98 -0.03 1.47 16 7 C -0.05 -0.82 5.39 -104.65 -0.56 -1.39 16 8 C -0.19 -3.33 9.70 -39.53 -0.38 -3.71 16 9 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 10 C -0.23 -5.12 9.17 -39.40 -0.36 -5.48 16 11 C 0.15 3.73 6.65 -39.11 -0.26 3.47 16 12 O -0.18 -5.20 9.76 0.07 0.00 -5.20 16 13 C -0.39 -11.07 9.49 30.89 0.29 -10.78 16 14 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 15 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 16 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 17 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 C -0.19 -3.93 9.65 -39.40 -0.38 -4.31 16 22 C -0.11 -1.06 2.51 -90.61 -0.23 -1.29 16 23 C -0.15 -1.41 8.57 37.16 0.32 -1.09 16 24 C -0.15 -1.20 8.96 37.16 0.33 -0.87 16 25 H 0.07 0.78 6.93 -51.93 -0.36 0.42 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.50 6.32 -51.93 -0.33 0.17 16 29 H 0.07 0.74 6.69 -51.93 -0.35 0.39 16 30 H 0.34 4.72 7.29 -39.29 -0.29 4.43 16 31 H 0.08 1.02 6.68 -51.93 -0.35 0.67 16 32 H 0.03 0.46 8.06 -51.93 -0.42 0.04 16 33 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 38 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 39 H 0.06 0.69 7.20 -51.93 -0.37 0.31 16 40 H 0.06 0.54 6.47 -51.93 -0.34 0.20 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.46 6.45 -51.93 -0.33 0.12 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -29.64 348.49 -8.34 -37.97 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.03 Total: 6.87 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -1.68 Total: -26.41 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.14 Total: -34.13 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.00 Total: -5.20 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.64 -8.34 -37.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042585898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.686 kcal (2) G-P(sol) polarization free energy of solvation -29.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds