Wall clock time and date at job start Mon Mar 30 2020 01:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47156 * 2 1 4 4 H 1.08992 * 109.47261 * 305.61860 * 3 2 1 5 5 N 1.46901 * 109.47244 * 65.62037 * 3 2 1 6 6 C 1.46895 * 111.00093 * 252.22958 * 5 3 2 7 7 C 1.50700 * 109.47294 * 180.40127 * 6 5 3 8 8 C 1.38325 * 119.96553 * 269.95978 * 7 6 5 9 9 C 1.38281 * 120.13713 * 179.97438 * 8 7 6 10 10 C 1.38117 * 120.06928 * 0.04118 * 9 8 7 11 11 C 1.38860 * 119.93098 * 359.97438 * 10 9 8 12 12 O 1.35750 * 120.06546 * 179.97438 * 11 10 9 13 13 C 1.34823 * 117.00543 * 354.47837 * 12 11 10 14 14 H 1.08001 * 119.99823 * 5.10670 * 13 12 11 15 15 C 1.38653 * 120.00390 * 185.10127 * 13 12 11 16 16 N 1.31561 * 119.99620 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00188 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46792 * 60.00329 * 17 15 13 19 19 H 1.48506 * 109.46940 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47355 * 300.00046 * 17 15 13 21 21 C 1.38073 * 119.96483 * 90.00073 * 7 6 5 22 22 C 1.53007 * 109.47175 * 185.61795 * 3 2 1 23 23 C 1.53002 * 109.47143 * 305.00472 * 22 3 2 24 24 C 1.53004 * 109.46657 * 65.00132 * 22 3 2 25 25 H 1.08998 * 109.47200 * 297.40502 * 1 2 3 26 26 H 1.09006 * 109.46763 * 57.40348 * 1 2 3 27 27 H 1.08996 * 109.47236 * 177.39745 * 1 2 3 28 28 H 1.09003 * 109.47220 * 240.00135 * 2 1 3 29 29 H 1.09001 * 109.47304 * 120.00171 * 2 1 3 30 30 H 1.00903 * 111.00005 * 128.26888 * 5 3 2 31 31 H 1.09000 * 109.46970 * 60.40087 * 6 5 3 32 32 H 1.08998 * 109.47019 * 300.40305 * 6 5 3 33 33 H 1.07998 * 119.92755 * 359.97438 * 8 7 6 34 34 H 1.07998 * 119.96213 * 180.02562 * 9 8 7 35 35 H 1.07996 * 120.03310 * 180.02562 * 10 9 8 36 36 H 0.96997 * 119.99710 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.03750 * 0.25512 * 21 7 6 38 38 H 1.08999 * 109.47116 * 184.99729 * 22 3 2 39 39 H 1.09002 * 109.46648 * 299.99617 * 23 22 3 40 40 H 1.09000 * 109.47303 * 59.99295 * 23 22 3 41 41 H 1.08997 * 109.46788 * 180.02562 * 23 22 3 42 42 H 1.08998 * 109.47392 * 60.00282 * 24 22 3 43 43 H 1.09002 * 109.46581 * 180.02562 * 24 22 3 44 44 H 1.08999 * 109.47029 * 299.99650 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5968 1.9845 -0.8353 5 7 1.6642 2.0948 1.2615 6 6 0.5939 3.0779 1.0474 7 6 0.2428 3.7319 2.3589 8 6 -0.7395 3.1830 3.1635 9 6 -1.0641 3.7799 4.3679 10 6 -0.4086 4.9270 4.7707 11 6 0.5776 5.4805 3.9651 12 8 1.2232 6.6082 4.3580 13 6 0.7825 7.2052 5.4836 14 1 0.0063 6.7401 6.0732 15 6 1.3258 8.4163 5.8844 16 7 2.2710 8.9831 5.1660 17 14 0.7146 9.2438 7.4436 18 1 0.9453 8.3458 8.6036 19 1 1.4511 10.5168 7.6496 20 1 -0.7378 9.5264 7.3174 21 6 0.9013 4.8787 2.7558 22 6 3.5635 1.4448 -0.1412 23 6 4.1791 0.5800 0.9606 24 6 3.9496 0.8789 -1.5093 25 1 -0.3633 0.4730 0.9123 26 1 -0.3633 0.5537 -0.8659 27 1 -0.3633 -1.0266 -0.0467 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.4658 2.5226 1.7002 31 1 -0.2857 2.5755 0.6450 32 1 0.9333 3.8367 0.3424 33 1 -1.2538 2.2865 2.8504 34 1 -1.8312 3.3488 4.9941 35 1 -0.6624 5.3924 5.7116 36 1 2.6513 9.8301 5.4465 37 1 1.6648 5.3095 2.1249 38 1 3.9351 2.4656 -0.0523 39 1 3.9040 0.9832 1.9352 40 1 3.8074 -0.4408 0.8716 41 1 5.2645 0.5820 0.8602 42 1 3.5111 1.4950 -2.2943 43 1 5.0350 0.8802 -1.6097 44 1 3.5780 -0.1419 -1.5983 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042585898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:17 Heat of formation + Delta-G solvation = -41.350252 kcal Electronic energy + Delta-G solvation = -21366.102729 eV Core-core repulsion = 18282.524400 eV Total energy + Delta-G solvation = -3083.578329 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82548 -39.57895 -38.22506 -34.99980 -34.25276 -33.03588 -31.52313 -30.60298 -28.06079 -27.53977 -26.94131 -24.82066 -23.20175 -23.06181 -22.25814 -20.20350 -19.40967 -18.72369 -16.86925 -16.73192 -16.33326 -16.23762 -16.06722 -15.82617 -15.46725 -15.24101 -14.72507 -14.50520 -14.28119 -13.94504 -13.77888 -13.60854 -13.39348 -13.06671 -12.90835 -12.83030 -12.63165 -12.49457 -12.39882 -12.24420 -12.20296 -12.10992 -11.83833 -11.42139 -11.32579 -11.24566 -11.11265 -10.79337 -9.70879 -9.24348 -8.97128 -8.46753 -6.15358 0.53312 0.77037 1.34571 1.45580 1.50892 2.17982 2.80016 3.11585 3.36937 3.56609 3.82337 3.90197 4.03358 4.12565 4.21143 4.33592 4.40268 4.45199 4.50371 4.61605 4.62428 4.69109 4.75275 4.77571 4.85550 4.90315 4.97790 5.05005 5.07420 5.13389 5.15307 5.19803 5.29683 5.33143 5.39643 5.46493 5.55851 5.61015 5.67582 5.74582 5.81918 6.02890 6.16868 6.26869 6.44681 6.97994 7.79415 8.76422 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025532 B = 0.003504 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.415714 B = 7988.911363 C = 8734.190813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C 0.090 3.910 4 H 0.054 0.946 5 N -0.678 5.678 6 C 0.111 3.889 7 C -0.036 4.036 8 C -0.169 4.169 9 C -0.073 4.073 10 C -0.245 4.245 11 C 0.113 3.887 12 O -0.234 6.234 13 C -0.415 4.415 14 H 0.101 0.899 15 C -0.023 4.023 16 N -0.922 5.922 17 Si 1.018 2.982 18 H -0.257 1.257 19 H -0.271 1.271 20 H -0.257 1.257 21 C -0.197 4.197 22 C -0.108 4.108 23 C -0.143 4.143 24 C -0.142 4.142 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.337 0.663 31 H 0.096 0.904 32 H 0.031 0.969 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.117 0.883 36 H 0.272 0.728 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 -17.656 -10.157 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.019 4.019 4 H 0.072 0.928 5 N -0.309 5.309 6 C -0.017 4.017 7 C -0.036 4.036 8 C -0.188 4.188 9 C -0.091 4.091 10 C -0.264 4.264 11 C 0.063 3.937 12 O -0.141 6.141 13 C -0.491 4.491 14 H 0.118 0.882 15 C -0.220 4.220 16 N -0.560 5.560 17 Si 0.837 3.163 18 H -0.181 1.181 19 H -0.196 1.196 20 H -0.182 1.182 21 C -0.217 4.217 22 C -0.127 4.127 23 C -0.200 4.200 24 C -0.200 4.200 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.156 0.844 31 H 0.114 0.886 32 H 0.050 0.950 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.135 0.865 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.347 -17.865 -10.089 20.650 hybrid contribution 0.566 1.713 0.409 1.850 sum -1.781 -16.152 -9.680 18.915 Atomic orbital electron populations 1.21741 0.96037 1.01321 1.01466 1.21599 0.95928 0.95013 1.01907 1.21726 0.93976 0.96073 0.90102 0.92825 1.60621 1.12598 1.32911 1.24784 1.20914 0.96397 0.92836 0.91562 1.19589 0.94907 0.92499 0.96643 1.20919 1.00707 1.01857 0.95356 1.21153 0.98002 0.93366 0.96552 1.21296 1.01989 1.01012 1.02115 1.19867 0.92079 0.87714 0.94049 1.83933 1.52993 1.34924 1.42264 1.21782 1.22601 1.04630 1.00089 0.88199 1.26584 0.96186 0.96016 1.03227 1.70182 1.26825 1.18422 1.40590 0.84659 0.78717 0.77468 0.75442 1.18142 1.19597 1.18170 1.20226 1.05578 0.99994 0.95860 1.21484 0.94759 0.99523 0.96983 1.21820 1.00111 1.00260 0.97822 1.21831 1.01512 1.01569 0.95053 0.92908 0.93284 0.92596 0.90833 0.91850 0.84403 0.88565 0.95046 0.83937 0.83805 0.86489 0.91880 0.87799 0.92639 0.93441 0.91498 0.92712 0.92683 0.92300 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.08 71.98 0.65 -1.85 16 2 C -0.11 -1.79 4.80 30.59 0.15 -1.65 16 3 C 0.09 1.74 1.97 44.92 0.09 1.83 16 4 H 0.05 1.05 7.57 -2.39 -0.02 1.03 16 5 N -0.68 -16.38 5.71 -495.58 -2.83 -19.21 16 6 C 0.11 2.94 5.22 85.56 0.45 3.39 16 7 C -0.04 -1.23 5.39 -19.88 -0.11 -1.33 16 8 C -0.17 -5.42 9.70 22.30 0.22 -5.20 16 9 C -0.07 -2.55 10.04 22.25 0.22 -2.33 16 10 C -0.24 -10.89 9.17 22.39 0.21 -10.69 16 11 C 0.11 5.75 6.65 22.58 0.15 5.90 16 12 O -0.23 -14.38 9.76 -22.68 -0.22 -14.61 16 13 C -0.41 -24.60 9.49 67.92 0.64 -23.96 16 14 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 15 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 16 N -0.92 -57.29 13.67 21.61 0.30 -57.00 16 17 Si 1.02 43.35 29.55 68.60 2.03 45.37 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 21 C -0.20 -8.55 9.65 22.39 0.22 -8.34 16 22 C -0.11 -1.95 2.51 -10.79 -0.03 -1.98 16 23 C -0.14 -2.57 8.57 71.98 0.62 -1.96 16 24 C -0.14 -2.03 8.96 71.98 0.64 -1.39 16 25 H 0.05 1.04 6.93 -2.39 -0.02 1.02 16 26 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 1.03 6.32 -2.39 -0.02 1.01 16 29 H 0.06 1.17 6.69 -2.39 -0.02 1.15 16 30 H 0.34 9.08 7.29 -89.69 -0.65 8.43 16 31 H 0.10 2.21 6.68 -2.39 -0.02 2.20 16 32 H 0.03 0.85 8.06 -2.39 -0.02 0.83 16 33 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 38 H 0.06 1.15 8.11 -2.39 -0.02 1.13 16 39 H 0.05 1.00 7.20 -2.39 -0.02 0.98 16 40 H 0.07 1.09 6.47 -2.39 -0.02 1.07 16 41 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 42 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.86 6.45 -2.39 -0.02 0.84 16 Total: -1.00 -68.37 348.49 4.18 -64.19 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.33 Total: 31.65 kcal Atomic # 6 Polarization: -54.98 SS G_CDS: 4.58 Total: -50.40 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -2.54 Total: -76.21 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.22 Total: -14.61 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -68.37 4.18 -64.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042585898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.836 kcal (2) G-P(sol) polarization free energy of solvation -68.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds