Wall clock time and date at job start Mon Mar 30 2020 01:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47049 * 2 1 4 4 C 1.53003 * 109.46900 * 119.99590 * 2 1 3 5 5 N 1.46897 * 109.46912 * 64.42611 * 4 2 1 6 6 C 1.46902 * 111.00083 * 200.18425 * 5 4 2 7 7 C 1.50709 * 109.46980 * 66.04269 * 6 5 4 8 8 H 1.08000 * 119.99603 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00024 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00149 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47043 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47063 * 120.00295 * 11 9 7 14 14 H 1.48499 * 109.47128 * 240.00453 * 11 9 7 15 15 C 1.46895 * 111.00573 * 76.23269 * 5 4 2 16 16 C 1.52995 * 109.47398 * 200.63639 * 15 5 4 17 17 O 1.42903 * 109.47576 * 62.77185 * 16 15 5 18 18 C 1.35894 * 117.00107 * 176.05669 * 17 16 15 19 19 C 1.38735 * 120.05440 * 179.97438 * 18 17 16 20 20 C 1.38143 * 119.94381 * 179.97438 * 19 18 17 21 21 C 1.38267 * 120.05433 * 0.02562 * 20 19 18 22 22 C 1.38265 * 120.11365 * 359.95972 * 21 20 19 23 23 C 1.38139 * 120.05632 * 0.04095 * 22 21 20 24 24 H 1.09005 * 109.46840 * 299.99957 * 1 2 3 25 25 H 1.09000 * 109.46869 * 60.00290 * 1 2 3 26 26 H 1.09003 * 109.46487 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47127 * 239.99736 * 2 1 3 28 28 H 1.08997 * 109.47260 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46960 * 300.00143 * 3 2 1 30 30 H 1.09006 * 109.47187 * 59.99519 * 3 2 1 31 31 H 1.09000 * 109.47461 * 304.42122 * 4 2 1 32 32 H 1.09007 * 109.47067 * 184.42132 * 4 2 1 33 33 H 1.08999 * 109.47578 * 186.03949 * 6 5 4 34 34 H 1.09002 * 109.47347 * 306.04659 * 6 5 4 35 35 H 0.97002 * 120.00100 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.47231 * 80.62765 * 15 5 4 37 37 H 1.09007 * 109.46966 * 320.63545 * 15 5 4 38 38 H 1.09005 * 109.47006 * 302.76750 * 16 15 5 39 39 H 1.09005 * 109.47366 * 182.77308 * 16 15 5 40 40 H 1.07996 * 120.02544 * 359.70648 * 19 18 17 41 41 H 1.08000 * 119.97505 * 180.02562 * 20 19 18 42 42 H 1.07998 * 119.94297 * 179.97438 * 21 20 19 43 43 H 1.08000 * 119.97219 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.02884 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6395 -2.1335 1.1971 6 6 1.6727 -2.7400 2.5347 7 6 0.6194 -2.1004 3.4025 8 1 -0.0117 -1.3217 3.0003 9 6 0.4609 -2.5101 4.7093 10 7 1.2290 -3.4587 5.1989 11 14 -0.8451 -1.7178 5.7846 12 1 -1.5708 -0.6851 5.0023 13 1 -1.8039 -2.7546 6.2440 14 1 -0.1992 -1.0844 6.9622 15 6 2.4819 -2.8853 0.2574 16 6 1.7579 -4.1653 -0.1649 17 8 0.5538 -3.8258 -0.8556 18 6 -0.1709 -4.8523 -1.3732 19 6 -1.3509 -4.5948 -2.0558 20 6 -2.0855 -5.6399 -2.5815 21 6 -1.6459 -6.9418 -2.4274 22 6 -0.4700 -7.2010 -1.7478 23 6 0.2682 -6.1594 -1.2202 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6134 -0.2551 2.1375 32 1 3.1272 -0.6531 1.2899 33 1 1.4767 -3.8091 2.4540 34 1 2.6549 -2.5832 2.9805 35 1 1.1177 -3.7467 6.1184 36 1 3.4242 -3.1434 0.7406 37 1 2.6805 -2.2731 -0.6223 38 1 1.5156 -4.7544 0.7197 39 1 2.4028 -4.7472 -0.8234 40 1 -1.6971 -3.5785 -2.1723 41 1 -3.0040 -5.4401 -3.1133 42 1 -2.2219 -7.7575 -2.8387 43 1 -0.1285 -8.2187 -1.6291 44 1 1.1864 -6.3624 -0.6891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044295953.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:14 Heat of formation + Delta-G solvation = -38.962214 kcal Electronic energy + Delta-G solvation = -21955.165031 eV Core-core repulsion = 18871.690255 eV Total energy + Delta-G solvation = -3083.474775 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95553 -39.22911 -37.99523 -35.62163 -34.50038 -32.02444 -31.36999 -30.06844 -28.83153 -27.83293 -26.15666 -24.77993 -23.31497 -22.96879 -21.74617 -20.53855 -19.16825 -18.52320 -17.25321 -16.94151 -16.70360 -16.54102 -16.06799 -15.55985 -15.45305 -15.24040 -14.77142 -14.28888 -14.27164 -14.06875 -13.82856 -13.66683 -13.40605 -13.20112 -12.95602 -12.75544 -12.64540 -12.47858 -12.38116 -12.29052 -12.07303 -11.72434 -11.69132 -11.63362 -11.50907 -11.26059 -11.03370 -10.60299 -9.89064 -9.05022 -8.89985 -8.20377 -6.27967 0.45569 0.58756 1.37464 1.38830 1.51869 2.36808 2.40634 2.92292 3.12156 3.25837 3.90892 3.96696 4.03497 4.12571 4.20322 4.22464 4.30934 4.35676 4.44069 4.55324 4.57894 4.61451 4.69313 4.81740 4.84355 4.90859 4.95955 4.99015 5.13212 5.14964 5.18009 5.25334 5.28689 5.37854 5.46916 5.54446 5.59746 5.64733 5.67865 5.70577 5.96545 6.09356 6.41087 6.58303 6.71364 6.88911 7.40991 8.90900 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012079 B = 0.005578 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.590085 B = 5018.926632 C = 6212.898569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.139 4.139 4 C 0.068 3.932 5 N -0.530 5.530 6 C 0.209 3.791 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.002 3.998 10 N -0.935 5.935 11 Si 0.961 3.039 12 H -0.265 1.265 13 H -0.280 1.280 14 H -0.277 1.277 15 C 0.052 3.948 16 C 0.076 3.924 17 O -0.310 6.310 18 C 0.111 3.889 19 C -0.174 4.174 20 C -0.082 4.082 21 C -0.168 4.168 22 C -0.086 4.086 23 C -0.229 4.229 24 H 0.034 0.966 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.022 0.978 33 H 0.003 0.997 34 H -0.039 1.039 35 H 0.263 0.737 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.128 0.872 41 H 0.154 0.846 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 -1.383 -16.348 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.100 4.100 3 C -0.197 4.197 4 C -0.060 4.060 5 N -0.254 5.254 6 C 0.083 3.917 7 C -0.550 4.550 8 H 0.078 0.922 9 C -0.195 4.195 10 N -0.576 5.576 11 Si 0.786 3.214 12 H -0.189 1.189 13 H -0.206 1.206 14 H -0.203 1.203 15 C -0.076 4.076 16 C 0.000 4.000 17 O -0.223 6.223 18 C 0.065 3.935 19 C -0.193 4.193 20 C -0.099 4.099 21 C -0.186 4.186 22 C -0.104 4.104 23 C -0.248 4.248 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.022 0.978 34 H -0.021 1.021 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.146 0.854 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.162 0.838 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.797 -1.280 -16.359 16.507 hybrid contribution 0.619 -0.092 1.631 1.747 sum -1.178 -1.372 -14.728 14.838 Atomic orbital electron populations 1.21570 0.95325 1.01310 1.00116 1.21044 0.96273 0.95925 0.96791 1.21774 1.00935 0.94941 1.02057 1.22080 0.96352 0.88668 0.98856 1.61964 1.52278 1.02124 1.09057 1.19392 0.93630 0.93842 0.84855 1.21455 1.17650 1.20068 0.95862 0.92232 1.25824 0.98465 0.95775 0.99453 1.70080 1.40924 1.30692 1.15898 0.85454 0.78940 0.78497 0.78506 1.18935 1.20627 1.20263 1.22195 0.93528 0.94710 0.97149 1.22807 0.84462 0.97792 0.94895 1.86159 1.36120 1.32076 1.67973 1.19518 0.92664 0.87526 0.93802 1.20688 0.94499 1.01171 1.02942 1.21300 0.99330 0.91906 0.97400 1.21398 0.97576 0.97469 1.02158 1.21277 0.94567 0.99089 0.95503 1.21475 1.03619 0.92463 1.07254 0.94672 0.92215 0.93609 0.91307 0.92348 0.91154 0.93296 0.92507 0.95966 0.97850 1.02133 0.92840 0.93131 0.88885 0.94219 0.89838 0.85410 0.82835 0.83211 0.83757 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 9.08 71.98 0.65 -3.53 16 2 C -0.08 -2.54 2.96 -10.79 -0.03 -2.57 16 3 C -0.14 -3.50 9.19 71.98 0.66 -2.84 16 4 C 0.07 2.66 4.18 86.30 0.36 3.02 16 5 N -0.53 -22.84 3.69 -900.78 -3.32 -26.16 16 6 C 0.21 11.18 4.54 85.56 0.39 11.56 16 7 C -0.51 -29.44 8.23 25.60 0.21 -29.23 16 8 H 0.06 3.42 7.32 -2.91 -0.02 3.40 16 9 C 0.00 0.14 5.46 84.65 0.46 0.60 16 10 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 11 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 C 0.05 1.85 5.20 86.30 0.45 2.29 16 16 C 0.08 2.59 4.94 71.98 0.36 2.95 16 17 O -0.31 -11.37 10.05 -92.36 -0.93 -12.30 16 18 C 0.11 3.64 6.69 22.51 0.15 3.79 16 19 C -0.17 -5.04 9.99 22.37 0.22 -4.81 16 20 C -0.08 -1.85 10.04 22.25 0.22 -1.62 16 21 C -0.17 -3.55 10.04 22.28 0.22 -3.33 16 22 C -0.09 -2.05 10.04 22.25 0.22 -1.82 16 23 C -0.23 -6.69 9.04 22.37 0.20 -6.48 16 24 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.04 1.78 7.73 -2.39 -0.02 1.76 16 27 H 0.07 2.05 6.70 -2.39 -0.02 2.03 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.27 8.14 -2.38 -0.02 1.26 16 31 H 0.06 2.52 6.58 -2.39 -0.02 2.51 16 32 H 0.02 0.82 7.99 -2.38 -0.02 0.80 16 33 H 0.00 0.20 6.65 -2.39 -0.02 0.18 16 34 H -0.04 -2.25 8.12 -2.39 -0.02 -2.27 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.05 1.74 7.99 -2.39 -0.02 1.72 16 37 H 0.09 2.85 6.48 -2.38 -0.02 2.83 16 38 H 0.04 1.56 6.51 -2.38 -0.02 1.54 16 39 H 0.08 2.27 7.42 -2.38 -0.02 2.26 16 40 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 41 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 42 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 44 H 0.13 3.51 6.30 -2.91 -0.02 3.49 16 Total: -1.00 -66.99 354.54 3.76 -63.23 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.95 Total: 16.44 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 4.76 Total: -32.02 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -3.04 Total: -82.75 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.93 Total: -12.30 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -66.99 3.76 -63.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044295953.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.267 kcal (2) G-P(sol) polarization free energy of solvation -66.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds