Wall clock time and date at job start Mon Mar 30 2020 01:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 117.00541 * 2 1 4 4 C 1.38761 * 120.05233 * 359.71979 * 3 2 1 5 5 C 1.38122 * 119.94017 * 179.70232 * 4 3 2 6 6 C 1.38286 * 120.05742 * 0.59602 * 5 4 3 7 7 C 1.38244 * 120.10970 * 359.68192 * 6 5 4 8 8 C 1.50703 * 119.96837 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47059 * 248.97255 * 8 7 6 10 10 C 1.46907 * 111.00087 * 201.43830 * 9 8 7 11 11 C 1.50696 * 109.47020 * 164.20507 * 10 9 8 12 12 H 1.07995 * 120.00346 * 4.89077 * 11 10 9 13 13 C 1.37878 * 119.99661 * 184.89721 * 11 10 9 14 14 N 1.31515 * 120.00178 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99935 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46725 * 59.99984 * 15 13 11 17 17 H 1.48497 * 109.47288 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47054 * 300.00288 * 15 13 11 19 19 C 1.46904 * 110.99586 * 77.49160 * 9 8 7 20 20 C 1.53006 * 109.46915 * 280.59311 * 19 9 8 21 21 C 1.52996 * 109.47345 * 177.48910 * 20 19 9 22 22 C 1.53002 * 109.47286 * 297.49164 * 20 19 9 23 23 C 1.38165 * 120.06044 * 0.02562 * 7 6 5 24 24 H 1.08997 * 109.47469 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46845 * 300.00798 * 1 2 3 26 26 H 1.09003 * 109.46539 * 60.00458 * 1 2 3 27 27 H 1.07996 * 120.02710 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.97011 * 180.30206 * 5 4 3 29 29 H 1.07997 * 119.94340 * 179.69763 * 6 5 4 30 30 H 1.08996 * 109.47421 * 8.98019 * 8 7 6 31 31 H 1.09006 * 109.46953 * 128.97646 * 8 7 6 32 32 H 1.09004 * 109.47234 * 284.20636 * 10 9 8 33 33 H 1.08999 * 109.47036 * 44.20491 * 10 9 8 34 34 H 0.97003 * 119.99544 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.47291 * 40.59592 * 19 9 8 36 36 H 1.09002 * 109.46852 * 160.60135 * 19 9 8 37 37 H 1.09000 * 109.46518 * 57.48549 * 20 19 9 38 38 H 1.09004 * 109.47214 * 60.00003 * 21 20 19 39 39 H 1.08995 * 109.47199 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46913 * 300.00312 * 21 20 19 41 41 H 1.08994 * 109.47175 * 184.89608 * 22 20 19 42 42 H 1.09006 * 109.46689 * 304.89740 * 22 20 19 43 43 H 1.09002 * 109.47144 * 64.89251 * 22 20 19 44 44 H 1.07995 * 120.03419 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 -0.0059 5 6 1.9210 3.6047 0.0004 6 6 3.3021 3.6757 0.0000 7 6 4.0561 2.5170 0.0000 8 6 5.5609 2.5980 -0.0010 9 7 6.0758 2.1276 -1.2938 10 6 7.4794 1.7092 -1.1808 11 6 7.8571 0.8871 -2.3860 12 1 7.1535 0.7605 -3.1954 13 6 9.1011 0.2964 -2.4551 14 7 9.9581 0.4508 -1.4696 15 14 9.5691 -0.7233 -3.9487 16 1 9.5063 0.1245 -5.1663 17 1 10.9493 -1.2444 -3.7796 18 1 8.6238 -1.8602 -4.0879 19 6 5.9149 3.1562 -2.3302 20 6 4.4692 3.1536 -2.8313 21 6 4.2858 4.2661 -3.8655 22 6 4.1550 1.8017 -3.4753 23 6 3.4312 1.2847 -0.0001 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 0.2129 2.3204 -0.0109 28 1 1.3342 4.5114 0.0007 29 1 3.7924 4.6379 -0.0001 30 1 5.8693 3.6312 0.1588 31 1 5.9590 1.9724 0.7980 32 1 8.1182 2.5908 -1.1277 33 1 7.6090 1.1118 -0.2783 34 1 10.8331 0.0349 -1.5182 35 1 6.1526 4.1341 -1.9116 36 1 6.5877 2.9432 -3.1610 37 1 3.7938 3.3221 -1.9926 38 1 4.9614 4.0974 -4.7042 39 1 3.2559 4.2645 -4.2221 40 1 4.5097 5.2291 -3.4066 41 1 3.1555 1.8295 -3.9091 42 1 4.8851 1.5936 -4.2576 43 1 4.2009 1.0191 -2.7180 44 1 4.0206 0.3798 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049800799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:31 Heat of formation + Delta-G solvation = -17.395244 kcal Electronic energy + Delta-G solvation = -22427.029447 eV Core-core repulsion = 19344.489886 eV Total energy + Delta-G solvation = -3082.539562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.07128 -38.21004 -36.46118 -33.98721 -32.57321 -31.04764 -30.20860 -27.38749 -27.02051 -26.55754 -25.86669 -23.82417 -22.27596 -21.14055 -20.32442 -19.28485 -17.60967 -16.20378 -16.10941 -15.83572 -15.66796 -15.12317 -14.53733 -14.29047 -13.95138 -13.63193 -13.45156 -13.24835 -12.83873 -12.55672 -12.33843 -12.19907 -11.90503 -11.69829 -11.41945 -11.37765 -11.33454 -11.01393 -10.91827 -10.78661 -10.68990 -10.47439 -10.29765 -10.13453 -9.77474 -9.64065 -9.21510 -8.46499 -8.38499 -7.89979 -7.21173 -5.98416 -3.98804 1.56824 1.67459 3.36682 3.37440 3.40482 3.43978 3.97694 4.47090 4.88714 4.94709 5.05008 5.08871 5.13196 5.32334 5.38155 5.40499 5.47219 5.54915 5.57114 5.65188 5.79344 5.84210 5.99170 6.07084 6.17569 6.21576 6.31286 6.33741 6.39438 6.52868 6.55516 6.61919 6.63016 6.70023 6.88367 7.00660 7.04940 7.10819 7.32889 7.36322 7.57620 7.86587 8.14175 8.26707 8.58535 9.08876 9.64945 11.12272 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018166 B = 0.005063 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.974490 B = 5528.668951 C = 5883.469211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.122 3.878 4 C -0.219 4.219 5 C -0.087 4.087 6 C -0.154 4.154 7 C -0.015 4.015 8 C 0.085 3.915 9 N -0.525 5.525 10 C 0.194 3.806 11 C -0.501 4.501 12 H 0.064 0.936 13 C 0.055 3.945 14 N -0.901 5.901 15 Si 0.896 3.104 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.276 1.276 19 C 0.069 3.931 20 C -0.107 4.107 21 C -0.143 4.143 22 C -0.128 4.128 23 C -0.122 4.122 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.035 0.965 31 H 0.080 0.920 32 H -0.012 1.012 33 H 0.033 0.967 34 H 0.261 0.739 35 H 0.017 0.983 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.030 0.970 42 H 0.047 0.953 43 H 0.068 0.932 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.617 5.481 2.508 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.078 3.922 4 C -0.238 4.238 5 C -0.106 4.106 6 C -0.173 4.173 7 C -0.016 4.016 8 C -0.043 4.043 9 N -0.249 5.249 10 C 0.069 3.931 11 C -0.540 4.540 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.540 5.540 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.202 1.202 19 C -0.059 4.059 20 C -0.126 4.126 21 C -0.201 4.201 22 C -0.185 4.185 23 C -0.141 4.141 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.005 0.995 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.586 4.812 2.422 18.393 hybrid contribution 0.550 0.309 -0.603 0.873 sum -17.036 5.121 1.819 17.882 Atomic orbital electron populations 1.22978 0.79073 1.03505 1.00986 1.86094 1.20794 1.27295 1.88932 1.19038 0.92388 0.83817 0.97001 1.21074 0.99401 0.92552 1.10755 1.20763 0.94435 0.96623 0.98737 1.20903 0.93646 0.98021 1.04701 1.19772 0.96067 0.91771 0.94004 1.21153 0.89758 0.98835 0.94530 1.62039 1.23510 1.36603 1.02708 1.19777 0.80585 0.94504 0.98259 1.21118 0.98822 1.30283 1.03734 0.91829 1.24964 0.96499 0.96715 0.96377 1.69946 1.07263 1.45044 1.31786 0.86599 0.77328 0.80645 0.83063 1.20366 1.21454 1.20184 1.22117 0.95925 0.91777 0.96121 1.21456 0.97957 0.94919 0.98228 1.21802 1.00605 0.98376 0.99336 1.21601 0.98538 0.97687 1.00674 1.20293 0.90626 0.98955 1.04222 0.88603 0.93028 0.92919 0.86241 0.86438 0.86424 0.94650 0.90177 0.99464 0.94933 0.92962 0.96466 0.90206 0.90039 0.93050 0.93516 0.93575 0.95130 0.93420 0.91330 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.48 10.50 -19.43 -0.20 -4.68 16 3 C 0.12 1.81 6.69 -39.21 -0.26 1.54 16 4 C -0.22 -2.77 9.04 -39.43 -0.36 -3.13 16 5 C -0.09 -1.08 10.04 -39.61 -0.40 -1.48 16 6 C -0.15 -2.12 7.44 -39.56 -0.29 -2.42 16 7 C -0.02 -0.24 3.62 -104.64 -0.38 -0.62 16 8 C 0.09 1.53 5.19 -4.98 -0.03 1.50 16 9 N -0.52 -10.96 3.77 -237.50 -0.90 -11.86 16 10 C 0.19 4.93 4.71 -4.97 -0.02 4.91 16 11 C -0.50 -13.89 8.39 -34.44 -0.29 -14.18 16 12 H 0.06 1.76 7.58 -52.49 -0.40 1.36 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 15 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.07 1.33 4.24 -3.82 -0.02 1.32 16 20 C -0.11 -1.78 2.69 -90.62 -0.24 -2.02 16 21 C -0.14 -2.05 9.19 37.16 0.34 -1.71 16 22 C -0.13 -2.25 8.99 37.16 0.33 -1.91 16 23 C -0.12 -2.00 9.38 -39.43 -0.37 -2.37 16 24 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 26 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 27 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 28 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 29 H 0.12 1.48 7.96 -52.49 -0.42 1.06 16 30 H 0.04 0.60 7.41 -51.93 -0.38 0.22 16 31 H 0.08 1.45 7.62 -51.93 -0.40 1.06 16 32 H -0.01 -0.34 8.05 -51.93 -0.42 -0.76 16 33 H 0.03 0.89 7.67 -51.93 -0.40 0.49 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.02 0.32 7.63 -51.93 -0.40 -0.08 16 36 H 0.08 1.73 6.95 -51.93 -0.36 1.37 16 37 H 0.08 1.32 3.62 -51.93 -0.19 1.14 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.34 7.55 -51.93 -0.39 0.94 16 44 H 0.13 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -29.87 350.24 -8.59 -38.45 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.39 Total: -0.20 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -1.09 Total: -17.83 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.16 Total: -37.80 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.20 Total: -4.68 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.87 -8.59 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.057 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds