Wall clock time and date at job start Mon Mar 30 2020 01:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 117.00541 * 2 1 4 4 C 1.38761 * 120.05233 * 359.71979 * 3 2 1 5 5 C 1.38122 * 119.94017 * 179.70232 * 4 3 2 6 6 C 1.38286 * 120.05742 * 0.59602 * 5 4 3 7 7 C 1.38244 * 120.10970 * 359.68192 * 6 5 4 8 8 C 1.50703 * 119.96837 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47059 * 248.97255 * 8 7 6 10 10 C 1.46907 * 111.00087 * 201.43830 * 9 8 7 11 11 C 1.50696 * 109.47020 * 164.20507 * 10 9 8 12 12 H 1.07995 * 120.00346 * 4.89077 * 11 10 9 13 13 C 1.37878 * 119.99661 * 184.89721 * 11 10 9 14 14 N 1.31515 * 120.00178 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99935 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46725 * 59.99984 * 15 13 11 17 17 H 1.48497 * 109.47288 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47054 * 300.00288 * 15 13 11 19 19 C 1.46904 * 110.99586 * 77.49160 * 9 8 7 20 20 C 1.53006 * 109.46915 * 280.59311 * 19 9 8 21 21 C 1.52996 * 109.47345 * 177.48910 * 20 19 9 22 22 C 1.53002 * 109.47286 * 297.49164 * 20 19 9 23 23 C 1.38165 * 120.06044 * 0.02562 * 7 6 5 24 24 H 1.08997 * 109.47469 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46845 * 300.00798 * 1 2 3 26 26 H 1.09003 * 109.46539 * 60.00458 * 1 2 3 27 27 H 1.07996 * 120.02710 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.97011 * 180.30206 * 5 4 3 29 29 H 1.07997 * 119.94340 * 179.69763 * 6 5 4 30 30 H 1.08996 * 109.47421 * 8.98019 * 8 7 6 31 31 H 1.09006 * 109.46953 * 128.97646 * 8 7 6 32 32 H 1.09004 * 109.47234 * 284.20636 * 10 9 8 33 33 H 1.08999 * 109.47036 * 44.20491 * 10 9 8 34 34 H 0.97003 * 119.99544 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.47291 * 40.59592 * 19 9 8 36 36 H 1.09002 * 109.46852 * 160.60135 * 19 9 8 37 37 H 1.09000 * 109.46518 * 57.48549 * 20 19 9 38 38 H 1.09004 * 109.47214 * 60.00003 * 21 20 19 39 39 H 1.08995 * 109.47199 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46913 * 300.00312 * 21 20 19 41 41 H 1.08994 * 109.47175 * 184.89608 * 22 20 19 42 42 H 1.09006 * 109.46689 * 304.89740 * 22 20 19 43 43 H 1.09002 * 109.47144 * 64.89251 * 22 20 19 44 44 H 1.07995 * 120.03419 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 -0.0059 5 6 1.9210 3.6047 0.0004 6 6 3.3021 3.6757 0.0000 7 6 4.0561 2.5170 0.0000 8 6 5.5609 2.5980 -0.0010 9 7 6.0758 2.1276 -1.2938 10 6 7.4794 1.7092 -1.1808 11 6 7.8571 0.8871 -2.3860 12 1 7.1535 0.7605 -3.1954 13 6 9.1011 0.2964 -2.4551 14 7 9.9581 0.4508 -1.4696 15 14 9.5691 -0.7233 -3.9487 16 1 9.5063 0.1245 -5.1663 17 1 10.9493 -1.2444 -3.7796 18 1 8.6238 -1.8602 -4.0879 19 6 5.9149 3.1562 -2.3302 20 6 4.4692 3.1536 -2.8313 21 6 4.2858 4.2661 -3.8655 22 6 4.1550 1.8017 -3.4753 23 6 3.4312 1.2847 -0.0001 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 0.2129 2.3204 -0.0109 28 1 1.3342 4.5114 0.0007 29 1 3.7924 4.6379 -0.0001 30 1 5.8693 3.6312 0.1588 31 1 5.9590 1.9724 0.7980 32 1 8.1182 2.5908 -1.1277 33 1 7.6090 1.1118 -0.2783 34 1 10.8331 0.0349 -1.5182 35 1 6.1526 4.1341 -1.9116 36 1 6.5877 2.9432 -3.1610 37 1 3.7938 3.3221 -1.9926 38 1 4.9614 4.0974 -4.7042 39 1 3.2559 4.2645 -4.2221 40 1 4.5097 5.2291 -3.4066 41 1 3.1555 1.8295 -3.9091 42 1 4.8851 1.5936 -4.2576 43 1 4.2009 1.0191 -2.7180 44 1 4.0206 0.3798 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049800799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:30 Heat of formation + Delta-G solvation = -34.285864 kcal Electronic energy + Delta-G solvation = -22427.761879 eV Core-core repulsion = 19344.489886 eV Total energy + Delta-G solvation = -3083.271994 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.16466 -39.51311 -37.75276 -35.57205 -34.51304 -32.38447 -31.29866 -29.06506 -28.14322 -27.84088 -27.25357 -25.58384 -23.45240 -22.68638 -21.65831 -20.72568 -18.79466 -18.23903 -17.21932 -16.94714 -16.80239 -16.55189 -16.19884 -15.79746 -15.45526 -14.87876 -14.70174 -14.52238 -14.22905 -14.00355 -13.74232 -13.62682 -13.23166 -13.03643 -12.90151 -12.81070 -12.67194 -12.56279 -12.45645 -12.28636 -12.09500 -11.97047 -11.70737 -11.60954 -11.39302 -11.25687 -11.04675 -10.58891 -9.62878 -8.98585 -8.94085 -8.17809 -6.26559 0.46011 0.59465 1.39678 1.42702 1.50461 2.40636 2.46769 2.85056 3.13793 3.43178 3.91376 3.99512 4.08622 4.19400 4.28221 4.33289 4.39847 4.43397 4.44896 4.53924 4.62503 4.69303 4.72717 4.77124 4.87079 4.91534 4.95449 4.99649 5.11370 5.17111 5.18356 5.24962 5.27836 5.37270 5.44960 5.56348 5.64493 5.68030 5.69499 5.79012 5.92403 6.10587 6.43971 6.58395 6.67556 6.88929 7.42122 8.92550 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018166 B = 0.005063 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.974490 B = 5528.668951 C = 5883.469211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.116 3.884 4 C -0.210 4.210 5 C -0.076 4.076 6 C -0.156 4.156 7 C -0.026 4.026 8 C 0.087 3.913 9 N -0.529 5.529 10 C 0.209 3.791 11 C -0.513 4.513 12 H 0.059 0.941 13 C 0.003 3.997 14 N -0.935 5.935 15 Si 0.963 3.037 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.271 1.271 19 C 0.072 3.928 20 C -0.099 4.099 21 C -0.139 4.139 22 C -0.122 4.122 23 C -0.147 4.147 24 H 0.113 0.887 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.152 0.848 28 H 0.156 0.844 29 H 0.133 0.867 30 H 0.046 0.954 31 H 0.064 0.936 32 H -0.038 1.038 33 H 0.004 0.996 34 H 0.263 0.737 35 H 0.025 0.975 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.031 0.969 43 H 0.041 0.959 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.677 6.852 1.558 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C 0.071 3.929 4 C -0.229 4.229 5 C -0.094 4.094 6 C -0.175 4.175 7 C -0.027 4.027 8 C -0.041 4.041 9 N -0.252 5.252 10 C 0.083 3.917 11 C -0.552 4.552 12 H 0.078 0.922 13 C -0.195 4.195 14 N -0.576 5.576 15 Si 0.788 3.212 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.056 4.056 20 C -0.117 4.117 21 C -0.196 4.196 22 C -0.179 4.179 23 C -0.166 4.166 24 H 0.131 0.869 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.170 0.830 28 H 0.174 0.826 29 H 0.151 0.849 30 H 0.064 0.936 31 H 0.082 0.918 32 H -0.021 1.021 33 H 0.022 0.978 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.675 6.191 1.472 21.633 hybrid contribution 1.396 -0.129 -0.238 1.422 sum -19.279 6.063 1.234 20.248 Atomic orbital electron populations 1.23314 0.76496 1.05285 1.02337 1.86063 1.23536 1.27401 1.88873 1.19096 0.91830 0.85041 0.96963 1.21439 1.00918 0.91646 1.08862 1.21177 0.93817 0.97932 0.96442 1.21073 0.94553 0.97513 1.04347 1.19491 0.94367 0.92707 0.96085 1.21134 0.91757 0.98773 0.92431 1.61976 1.20227 1.38198 1.04835 1.19407 0.83106 0.92835 0.96334 1.21387 0.99025 1.30551 1.04214 0.92236 1.25834 0.96404 0.97858 0.99362 1.70073 1.07674 1.46081 1.33747 0.85532 0.77140 0.79018 0.79506 1.19330 1.20753 1.19665 1.22123 0.97539 0.91364 0.94600 1.21415 0.95707 0.95372 0.99250 1.21762 1.01803 0.97761 0.98305 1.21529 0.99374 0.97551 0.99494 1.20146 0.91838 0.98058 1.06586 0.86893 0.91371 0.91646 0.83048 0.82640 0.84903 0.93587 0.91805 1.02073 0.97786 0.92793 0.95681 0.93161 0.88970 0.93653 0.91408 0.92185 0.92840 0.94965 0.93976 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.34 -9.42 10.50 -92.44 -0.97 -10.39 16 3 C 0.12 3.29 6.69 22.51 0.15 3.44 16 4 C -0.21 -4.54 9.04 22.37 0.20 -4.34 16 5 C -0.08 -1.54 10.04 22.25 0.22 -1.32 16 6 C -0.16 -3.91 7.44 22.28 0.17 -3.74 16 7 C -0.03 -0.82 3.62 -19.88 -0.07 -0.89 16 8 C 0.09 3.25 5.19 85.56 0.44 3.69 16 9 N -0.53 -23.26 3.77 -905.33 -3.41 -26.68 16 10 C 0.21 11.38 4.71 85.55 0.40 11.79 16 11 C -0.51 -29.76 8.39 25.60 0.21 -29.54 16 12 H 0.06 3.43 7.58 -2.91 -0.02 3.41 16 13 C 0.00 0.18 5.46 84.65 0.46 0.64 16 14 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 15 Si 0.96 45.58 29.54 68.60 2.03 47.60 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 19 C 0.07 2.83 4.24 86.30 0.37 3.20 16 20 C -0.10 -3.18 2.69 -10.79 -0.03 -3.21 16 21 C -0.14 -3.59 9.19 71.98 0.66 -2.93 16 22 C -0.12 -4.26 8.99 71.98 0.65 -3.61 16 23 C -0.15 -4.97 9.38 22.37 0.21 -4.76 16 24 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 0.85 7.67 -2.39 -0.02 0.83 16 26 H 0.06 0.87 7.65 -2.39 -0.02 0.85 16 27 H 0.15 2.29 6.30 -2.91 -0.02 2.27 16 28 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 29 H 0.13 2.91 7.96 -2.91 -0.02 2.89 16 30 H 0.05 1.59 7.41 -2.39 -0.02 1.58 16 31 H 0.06 2.53 7.62 -2.38 -0.02 2.51 16 32 H -0.04 -2.24 8.05 -2.39 -0.02 -2.26 16 33 H 0.00 0.24 7.67 -2.39 -0.02 0.22 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.03 0.94 7.63 -2.39 -0.02 0.92 16 36 H 0.05 2.26 6.95 -2.39 -0.02 2.24 16 37 H 0.09 2.81 3.62 -2.39 -0.01 2.80 16 38 H 0.04 1.22 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.03 1.18 8.14 -2.38 -0.02 1.17 16 43 H 0.04 1.68 7.55 -2.39 -0.02 1.66 16 44 H 0.10 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -67.84 350.24 4.04 -63.79 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.95 Total: 12.84 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 5.16 Total: -30.17 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -3.13 Total: -83.68 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.97 Total: -10.39 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -67.84 4.04 -63.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.508 kcal (2) G-P(sol) polarization free energy of solvation -67.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds