Wall clock time and date at job start Mon Mar 30 2020 01:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47246 * 2 1 4 4 C 1.35898 * 117.00319 * 180.02562 * 3 2 1 5 5 C 1.38752 * 120.05229 * 359.97438 * 4 3 2 6 6 C 1.38125 * 119.94269 * 180.02562 * 5 4 3 7 7 C 1.38292 * 120.05640 * 0.02562 * 6 5 4 8 8 C 1.38250 * 120.10959 * 359.70918 * 7 6 5 9 9 C 1.38166 * 120.05202 * 0.54512 * 8 7 6 10 10 C 1.50705 * 120.02411 * 179.75216 * 9 8 7 11 11 H 1.08996 * 109.46989 * 219.72525 * 10 9 8 12 12 C 1.52992 * 109.47183 * 99.72570 * 10 9 8 13 13 N 1.46901 * 109.47087 * 339.72197 * 10 9 8 14 14 C 1.46894 * 110.99977 * 207.16704 * 13 10 9 15 15 H 1.09001 * 109.47386 * 326.09330 * 14 13 10 16 16 C 1.50697 * 109.47336 * 206.09337 * 14 13 10 17 17 H 1.07998 * 119.99755 * 0.02562 * 16 14 13 18 18 C 1.37873 * 120.00346 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99945 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 120.00367 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46447 * 60.00295 * 20 18 16 22 22 H 1.48502 * 109.47190 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47149 * 300.00234 * 20 18 16 24 24 C 1.53005 * 109.47173 * 86.09252 * 14 13 10 25 25 C 1.53005 * 109.46846 * 61.42075 * 24 14 13 26 26 H 1.09000 * 109.47262 * 299.99771 * 1 2 3 27 27 H 1.08994 * 109.47421 * 59.99978 * 1 2 3 28 28 H 1.09001 * 109.47188 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47015 * 239.99745 * 2 1 3 30 30 H 1.09010 * 109.47064 * 119.99962 * 2 1 3 31 31 H 1.07997 * 120.02927 * 359.97438 * 5 4 3 32 32 H 1.08002 * 119.97204 * 180.02562 * 6 5 4 33 33 H 1.08001 * 119.94253 * 179.97438 * 7 6 5 34 34 H 1.07999 * 119.97083 * 180.27841 * 8 7 6 35 35 H 1.08994 * 109.47407 * 180.02562 * 12 10 9 36 36 H 1.09009 * 109.47250 * 299.99714 * 12 10 9 37 37 H 1.08996 * 109.47676 * 59.99363 * 12 10 9 38 38 H 1.00900 * 110.99911 * 83.21379 * 13 10 9 39 39 H 0.97004 * 120.00373 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.47439 * 181.41786 * 24 14 13 41 41 H 1.08997 * 109.47028 * 301.42459 * 24 14 13 42 42 H 1.09006 * 109.46826 * 65.38488 * 25 24 14 43 43 H 1.08996 * 109.47205 * 185.38506 * 25 24 14 44 44 H 1.09000 * 109.47348 * 305.38919 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1999 0.4258 -0.0005 6 6 5.5688 0.6094 -0.0005 7 6 6.0962 1.8878 0.0000 8 6 5.2551 2.9850 -0.0056 9 6 3.8850 2.8066 -0.0003 10 6 2.9687 4.0031 -0.0007 11 1 2.1226 3.8130 0.6596 12 6 2.4602 4.2555 -1.4214 13 7 3.7041 5.1832 0.4732 14 6 2.7947 6.1568 1.0919 15 1 1.8332 6.1329 0.5789 16 6 3.3877 7.5379 0.9830 17 1 4.3444 7.6783 0.5020 18 6 2.7091 8.6221 1.4976 19 7 1.5443 8.4510 2.0838 20 14 3.4446 10.3340 1.3633 21 1 3.6385 10.6785 -0.0681 22 1 2.5251 11.3183 1.9887 23 1 4.7544 10.3662 2.0620 24 6 2.5947 5.8024 2.5668 25 6 3.9390 5.8706 3.2944 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 3.7885 -0.5728 0.0003 32 1 6.2280 -0.2461 -0.0009 33 1 7.1669 2.0293 0.0004 34 1 5.6693 3.9824 -0.0097 35 1 1.7979 5.1212 -1.4218 36 1 3.3064 4.4457 -2.0818 37 1 1.9147 3.3800 -1.7731 38 1 4.2309 5.6060 -0.2763 39 1 1.0670 9.2138 2.4462 40 1 1.9002 6.5099 3.0197 41 1 2.1893 4.7937 2.6464 42 1 4.2987 6.8996 3.2974 43 1 3.8143 5.5263 4.3210 44 1 4.6616 5.2346 2.7831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:11 Heat of formation + Delta-G solvation = -24.597114 kcal Electronic energy + Delta-G solvation = -22259.649689 eV Core-core repulsion = 19176.797831 eV Total energy + Delta-G solvation = -3082.851858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09190 -37.58804 -36.40958 -33.68471 -31.90350 -31.19683 -29.94252 -29.26552 -27.95918 -25.76070 -24.04366 -23.29056 -22.80324 -21.43468 -20.28005 -18.70309 -17.98873 -16.50924 -16.03728 -15.70513 -15.34732 -14.82289 -14.22510 -13.95245 -13.75035 -13.45841 -13.31220 -12.98851 -12.74601 -12.63443 -12.45355 -11.95848 -11.88048 -11.75075 -11.60652 -11.48224 -11.28588 -10.88932 -10.77673 -10.70644 -10.62161 -10.36543 -10.18891 -9.97726 -9.64363 -9.29236 -8.72609 -8.50463 -8.42536 -7.85687 -7.16639 -5.96977 -4.02113 1.64843 1.72333 3.33385 3.34484 3.38241 3.40722 4.06331 4.43648 4.85447 4.86708 4.95146 5.10535 5.16431 5.32757 5.36175 5.38987 5.44812 5.62930 5.71530 5.74729 5.85915 5.90757 5.97198 6.10248 6.19737 6.36776 6.46336 6.55855 6.64045 6.68567 6.78563 6.80465 6.91802 6.95149 7.12906 7.33236 7.42462 7.57588 7.65424 7.80348 7.85322 7.92113 8.32486 8.46383 8.73380 9.07548 9.62324 11.08932 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.004761 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.631585 B = 5880.136516 C = 6481.126785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.310 6.310 4 C 0.124 3.876 5 C -0.216 4.216 6 C -0.096 4.096 7 C -0.162 4.162 8 C -0.057 4.057 9 C -0.085 4.085 10 C 0.129 3.871 11 H 0.083 0.917 12 C -0.167 4.167 13 N -0.679 5.679 14 C 0.218 3.782 15 H 0.002 0.998 16 C -0.511 4.511 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.277 1.277 24 C -0.101 4.101 25 C -0.118 4.118 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.330 0.670 39 H 0.260 0.740 40 H 0.084 0.916 41 H 0.009 0.991 42 H 0.050 0.950 43 H 0.010 0.990 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 -16.275 -4.851 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.224 6.224 4 C 0.079 3.921 5 C -0.234 4.234 6 C -0.115 4.115 7 C -0.181 4.181 8 C -0.075 4.075 9 C -0.086 4.086 10 C 0.018 3.982 11 H 0.101 0.899 12 C -0.226 4.226 13 N -0.309 5.309 14 C 0.111 3.889 15 H 0.020 0.980 16 C -0.550 4.550 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.140 4.140 25 C -0.175 4.175 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.156 0.844 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.148 0.852 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.028 0.972 42 H 0.070 0.930 43 H 0.030 0.970 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.237 -16.293 -4.143 16.960 hybrid contribution -0.007 0.959 -0.730 1.205 sum 2.230 -15.334 -4.873 16.244 Atomic orbital electron populations 1.21764 0.92972 1.02439 1.03757 1.22700 0.95743 0.82645 1.00880 1.86121 1.19236 1.28337 1.88691 1.18852 0.82048 0.93682 0.97514 1.21067 0.94450 0.97405 1.10514 1.20796 0.94129 0.97113 0.99423 1.21061 0.99634 0.92577 1.04795 1.20969 0.91782 0.99440 0.95338 1.19488 0.94593 0.91784 1.02757 1.20191 0.94038 0.89444 0.94516 0.89937 1.22373 1.01105 1.01564 0.97551 1.60761 1.27882 1.08593 1.33696 1.19097 0.90149 0.88517 0.91135 0.98023 1.21142 1.05199 0.91083 1.37559 0.92434 1.24868 0.94855 0.98843 0.95208 1.69882 1.13844 1.30560 1.38471 0.86665 0.79008 0.84163 0.78171 1.20450 1.21428 1.20263 1.21426 0.97150 0.97225 0.98199 1.21430 0.98974 1.01161 0.95983 0.91369 0.91531 0.90742 0.92502 0.92414 0.86261 0.86643 0.86449 0.84413 0.92094 0.93174 0.92992 0.85234 0.92986 0.89748 0.97234 0.93049 0.97050 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 37.16 0.38 -1.02 16 2 C 0.06 0.61 5.46 37.16 0.20 0.81 16 3 O -0.31 -4.70 9.28 -19.42 -0.18 -4.88 16 4 C 0.12 1.96 6.66 -39.22 -0.26 1.70 16 5 C -0.22 -2.90 9.04 -39.43 -0.36 -3.25 16 6 C -0.10 -1.23 10.04 -39.60 -0.40 -1.63 16 7 C -0.16 -2.22 10.04 -39.56 -0.40 -2.62 16 8 C -0.06 -0.91 9.33 -39.60 -0.37 -1.27 16 9 C -0.08 -1.45 5.10 -104.47 -0.53 -1.98 16 10 C 0.13 2.43 2.26 -68.87 -0.16 2.28 16 11 H 0.08 1.74 6.90 -51.93 -0.36 1.38 16 12 C -0.17 -2.89 9.13 37.15 0.34 -2.56 16 13 N -0.68 -14.10 4.06 -102.18 -0.41 -14.51 16 14 C 0.22 5.39 2.11 -68.87 -0.15 5.25 16 15 H 0.00 0.06 7.28 -51.93 -0.38 -0.32 16 16 C -0.51 -13.56 7.36 -34.44 -0.25 -13.82 16 17 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.17 11.33 55.43 0.63 -24.54 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 C -0.10 -2.51 5.56 -26.73 -0.15 -2.66 16 25 C -0.12 -2.73 9.47 37.16 0.35 -2.37 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 30 H 0.06 0.58 7.66 -51.92 -0.40 0.18 16 31 H 0.12 1.31 6.30 -52.49 -0.33 0.98 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.14 2.20 6.90 -52.49 -0.36 1.84 16 35 H 0.06 1.14 7.60 -51.93 -0.39 0.74 16 36 H 0.05 0.81 8.13 -51.92 -0.42 0.39 16 37 H 0.05 0.84 8.05 -51.93 -0.42 0.42 16 38 H 0.33 6.68 7.54 -39.29 -0.30 6.38 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.08 2.31 6.11 -51.93 -0.32 1.99 16 41 H 0.01 0.22 7.52 -51.93 -0.39 -0.17 16 42 H 0.05 1.26 7.38 -51.93 -0.38 0.87 16 43 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.05 1.07 7.49 -51.93 -0.39 0.68 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -28.54 349.77 -8.86 -37.40 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.31 Total: 6.64 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -1.84 Total: -21.50 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.21 Total: -39.05 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.18 Total: -4.88 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.54 -8.86 -37.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.799 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds