Wall clock time and date at job start Mon Mar 30 2020 01:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47246 * 2 1 4 4 C 1.35898 * 117.00319 * 180.02562 * 3 2 1 5 5 C 1.38752 * 120.05229 * 359.97438 * 4 3 2 6 6 C 1.38125 * 119.94269 * 180.02562 * 5 4 3 7 7 C 1.38292 * 120.05640 * 0.02562 * 6 5 4 8 8 C 1.38250 * 120.10959 * 359.70918 * 7 6 5 9 9 C 1.38166 * 120.05202 * 0.54512 * 8 7 6 10 10 C 1.50705 * 120.02411 * 179.75216 * 9 8 7 11 11 H 1.08996 * 109.46989 * 219.72525 * 10 9 8 12 12 C 1.52992 * 109.47183 * 99.72570 * 10 9 8 13 13 N 1.46901 * 109.47087 * 339.72197 * 10 9 8 14 14 C 1.46894 * 110.99977 * 207.16704 * 13 10 9 15 15 H 1.09001 * 109.47386 * 326.09330 * 14 13 10 16 16 C 1.50697 * 109.47336 * 206.09337 * 14 13 10 17 17 H 1.07998 * 119.99755 * 0.02562 * 16 14 13 18 18 C 1.37873 * 120.00346 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99945 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 120.00367 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46447 * 60.00295 * 20 18 16 22 22 H 1.48502 * 109.47190 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47149 * 300.00234 * 20 18 16 24 24 C 1.53005 * 109.47173 * 86.09252 * 14 13 10 25 25 C 1.53005 * 109.46846 * 61.42075 * 24 14 13 26 26 H 1.09000 * 109.47262 * 299.99771 * 1 2 3 27 27 H 1.08994 * 109.47421 * 59.99978 * 1 2 3 28 28 H 1.09001 * 109.47188 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47015 * 239.99745 * 2 1 3 30 30 H 1.09010 * 109.47064 * 119.99962 * 2 1 3 31 31 H 1.07997 * 120.02927 * 359.97438 * 5 4 3 32 32 H 1.08002 * 119.97204 * 180.02562 * 6 5 4 33 33 H 1.08001 * 119.94253 * 179.97438 * 7 6 5 34 34 H 1.07999 * 119.97083 * 180.27841 * 8 7 6 35 35 H 1.08994 * 109.47407 * 180.02562 * 12 10 9 36 36 H 1.09009 * 109.47250 * 299.99714 * 12 10 9 37 37 H 1.08996 * 109.47676 * 59.99363 * 12 10 9 38 38 H 1.00900 * 110.99911 * 83.21379 * 13 10 9 39 39 H 0.97004 * 120.00373 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.47439 * 181.41786 * 24 14 13 41 41 H 1.08997 * 109.47028 * 301.42459 * 24 14 13 42 42 H 1.09006 * 109.46826 * 65.38488 * 25 24 14 43 43 H 1.08996 * 109.47205 * 185.38506 * 25 24 14 44 44 H 1.09000 * 109.47348 * 305.38919 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1999 0.4258 -0.0005 6 6 5.5688 0.6094 -0.0005 7 6 6.0962 1.8878 0.0000 8 6 5.2551 2.9850 -0.0056 9 6 3.8850 2.8066 -0.0003 10 6 2.9687 4.0031 -0.0007 11 1 2.1226 3.8130 0.6596 12 6 2.4602 4.2555 -1.4214 13 7 3.7041 5.1832 0.4732 14 6 2.7947 6.1568 1.0919 15 1 1.8332 6.1329 0.5789 16 6 3.3877 7.5379 0.9830 17 1 4.3444 7.6783 0.5020 18 6 2.7091 8.6221 1.4976 19 7 1.5443 8.4510 2.0838 20 14 3.4446 10.3340 1.3633 21 1 3.6385 10.6785 -0.0681 22 1 2.5251 11.3183 1.9887 23 1 4.7544 10.3662 2.0620 24 6 2.5947 5.8024 2.5668 25 6 3.9390 5.8706 3.2944 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 3.7885 -0.5728 0.0003 32 1 6.2280 -0.2461 -0.0009 33 1 7.1669 2.0293 0.0004 34 1 5.6693 3.9824 -0.0097 35 1 1.7979 5.1212 -1.4218 36 1 3.3064 4.4457 -2.0818 37 1 1.9147 3.3800 -1.7731 38 1 4.2309 5.6060 -0.2763 39 1 1.0670 9.2138 2.4462 40 1 1.9002 6.5099 3.0197 41 1 2.1893 4.7937 2.6464 42 1 4.2987 6.8996 3.2974 43 1 3.8143 5.5263 4.3210 44 1 4.6616 5.2346 2.7831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:10 Heat of formation + Delta-G solvation = -39.497363 kcal Electronic energy + Delta-G solvation = -22260.295812 eV Core-core repulsion = 19176.797831 eV Total energy + Delta-G solvation = -3083.497981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20443 -38.88854 -37.90476 -35.42218 -33.29101 -32.65563 -31.26163 -30.54759 -29.41092 -27.71328 -25.22931 -24.97907 -24.15543 -22.47187 -21.73983 -20.51351 -19.12794 -18.29904 -17.11917 -16.97215 -16.61991 -16.57252 -15.73372 -15.38903 -15.23298 -14.87268 -14.58794 -14.33675 -14.15541 -13.89851 -13.81328 -13.51049 -13.35851 -13.18607 -12.82270 -12.78008 -12.57775 -12.53350 -12.43642 -12.36682 -11.95662 -11.87777 -11.74208 -11.57740 -11.37391 -11.24115 -10.76737 -10.50770 -9.63838 -9.04508 -8.87394 -8.06184 -6.18190 0.53719 0.62587 1.44322 1.45669 1.52688 2.38902 2.44883 2.94777 3.22633 3.58902 3.94079 4.06082 4.07996 4.19849 4.29655 4.31481 4.39340 4.41573 4.50850 4.64542 4.65080 4.75667 4.81280 4.84775 4.93119 4.94583 4.99870 5.04121 5.13649 5.21878 5.28876 5.33804 5.43934 5.51598 5.57876 5.64814 5.73624 5.78126 5.84172 5.93882 6.05452 6.29486 6.54997 6.61355 6.84296 7.08624 7.50468 8.99102 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.004761 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.631585 B = 5880.136516 C = 6481.126785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.336 6.336 4 C 0.112 3.888 5 C -0.214 4.214 6 C -0.088 4.088 7 C -0.164 4.164 8 C -0.070 4.070 9 C -0.113 4.113 10 C 0.136 3.864 11 H 0.051 0.949 12 C -0.156 4.156 13 N -0.669 5.669 14 C 0.227 3.773 15 H -0.037 1.037 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.017 3.983 19 N -0.918 5.918 20 Si 0.954 3.046 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.271 1.271 24 C -0.096 4.096 25 C -0.104 4.104 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.129 0.871 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.333 0.667 39 H 0.259 0.741 40 H 0.056 0.944 41 H 0.009 0.991 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 -18.187 -5.295 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.251 6.251 4 C 0.067 3.933 5 C -0.232 4.232 6 C -0.106 4.106 7 C -0.182 4.182 8 C -0.089 4.089 9 C -0.114 4.114 10 C 0.026 3.974 11 H 0.069 0.931 12 C -0.215 4.215 13 N -0.299 5.299 14 C 0.119 3.881 15 H -0.019 1.019 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.182 4.182 19 N -0.558 5.558 20 Si 0.780 3.220 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.196 1.196 24 C -0.135 4.135 25 C -0.162 4.162 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.147 0.853 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.151 0.849 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.028 0.972 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.106 -18.225 -4.599 19.240 hybrid contribution -0.616 1.422 -0.609 1.665 sum 3.490 -16.803 -5.208 17.934 Atomic orbital electron populations 1.21806 0.92127 1.04070 1.02724 1.23015 0.96494 0.81067 1.02196 1.86102 1.19239 1.31031 1.88727 1.19001 0.82710 0.93847 0.97790 1.21404 0.94650 0.97884 1.09292 1.21244 0.94331 0.97870 0.97161 1.21345 1.00627 0.92314 1.03914 1.20993 0.91579 1.00044 0.96240 1.19337 0.94818 0.91500 1.05782 1.20028 0.93540 0.89562 0.94276 0.93124 1.22243 1.01109 1.00945 0.97179 1.60685 1.27067 1.08074 1.34072 1.18840 0.89006 0.89185 0.91101 1.01902 1.21408 1.05203 0.91990 1.37271 0.92208 1.25626 0.95166 1.02502 0.94930 1.70032 1.15049 1.31415 1.39298 0.85669 0.78262 0.79682 0.78344 1.19742 1.21401 1.19625 1.21298 0.97622 0.96260 0.98310 1.21276 0.97706 1.00240 0.96940 0.92760 0.92213 0.87731 0.90716 0.91323 0.83542 0.83070 0.84048 0.85306 0.94345 0.91929 0.91970 0.84912 0.93142 0.92532 0.97230 0.94723 0.95130 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 10.28 71.98 0.74 -1.87 16 2 C 0.05 0.94 5.46 71.98 0.39 1.33 16 3 O -0.34 -10.10 9.28 -92.41 -0.86 -10.96 16 4 C 0.11 3.41 6.66 22.51 0.15 3.56 16 5 C -0.21 -5.10 9.04 22.37 0.20 -4.90 16 6 C -0.09 -1.91 10.04 22.26 0.22 -1.69 16 7 C -0.16 -4.02 10.04 22.29 0.22 -3.80 16 8 C -0.07 -2.16 9.33 22.26 0.21 -1.96 16 9 C -0.11 -3.85 5.10 -19.77 -0.10 -3.95 16 10 C 0.14 5.34 2.26 44.17 0.10 5.44 16 11 H 0.05 2.28 6.90 -2.39 -0.02 2.26 16 12 C -0.16 -5.60 9.13 71.98 0.66 -4.94 16 13 N -0.67 -28.62 4.06 -477.17 -1.94 -30.55 16 14 C 0.23 11.68 2.11 44.17 0.09 11.78 16 15 H -0.04 -2.13 7.28 -2.39 -0.02 -2.15 16 16 C -0.52 -28.16 7.36 25.60 0.19 -27.98 16 17 H 0.06 3.15 7.60 -2.91 -0.02 3.13 16 18 C 0.02 0.92 5.30 84.65 0.45 1.37 16 19 N -0.92 -53.51 11.33 21.45 0.24 -53.26 16 20 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 C -0.10 -4.93 5.56 30.60 0.17 -4.76 16 25 C -0.10 -4.82 9.47 71.98 0.68 -4.14 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.22 7.66 -2.39 -0.02 1.20 16 30 H 0.07 1.21 7.66 -2.38 -0.02 1.19 16 31 H 0.15 2.62 6.30 -2.91 -0.02 2.60 16 32 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.13 4.08 6.90 -2.91 -0.02 4.06 16 35 H 0.04 1.51 7.60 -2.39 -0.02 1.49 16 36 H 0.06 2.05 8.13 -2.38 -0.02 2.03 16 37 H 0.06 2.07 8.05 -2.39 -0.02 2.05 16 38 H 0.33 13.80 7.54 -89.69 -0.68 13.12 16 39 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.06 3.22 6.11 -2.39 -0.01 3.20 16 41 H 0.01 0.45 7.52 -2.39 -0.02 0.44 16 42 H 0.03 1.69 7.38 -2.38 -0.02 1.67 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.05 2.43 7.49 -2.39 -0.02 2.41 16 Total: -1.00 -63.03 349.77 4.15 -58.88 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.29 Total: 26.68 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 4.38 Total: -36.49 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -1.69 Total: -83.82 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.86 Total: -10.96 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -63.03 4.15 -58.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.381 kcal (2) G-P(sol) polarization free energy of solvation -63.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds