Wall clock time and date at job start Mon Mar 30 2020 01:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47141 * 2 1 4 4 H 1.08999 * 109.47222 * 54.36891 * 3 2 1 5 5 C 1.50698 * 109.47138 * 174.37458 * 3 2 1 6 6 H 1.08002 * 120.00353 * 119.99897 * 5 3 2 7 7 C 1.37880 * 119.99756 * 299.99443 * 5 3 2 8 8 N 1.31515 * 120.00012 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99795 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47469 * 60.00396 * 9 7 5 11 11 H 1.48503 * 109.46702 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47341 * 299.99897 * 9 7 5 13 13 N 1.46908 * 109.46889 * 294.37039 * 3 2 1 14 14 C 1.46896 * 110.99967 * 154.43903 * 13 3 2 15 15 H 1.09002 * 109.47193 * 33.86179 * 14 13 3 16 16 C 1.53001 * 109.47266 * 273.86295 * 14 13 3 17 17 C 1.53000 * 109.47262 * 153.85827 * 14 13 3 18 18 C 1.53002 * 109.47085 * 295.00366 * 17 14 13 19 19 C 1.50702 * 109.47024 * 179.97438 * 18 17 14 20 20 C 1.38268 * 119.94232 * 269.73050 * 19 18 17 21 21 C 1.38142 * 120.05327 * 179.73044 * 20 19 18 22 22 C 1.38731 * 119.94501 * 0.55684 * 21 20 19 23 23 O 1.35899 * 120.05865 * 179.68902 * 22 21 20 24 24 C 1.38731 * 119.88849 * 359.71173 * 22 21 20 25 25 C 1.38143 * 119.94288 * 359.97438 * 24 22 21 26 26 H 1.08996 * 109.47067 * 65.34075 * 1 2 3 27 27 H 1.08997 * 109.46650 * 185.33890 * 1 2 3 28 28 H 1.08997 * 109.46959 * 305.33303 * 1 2 3 29 29 H 1.09003 * 109.47152 * 239.99772 * 2 1 3 30 30 H 1.09000 * 109.47431 * 120.00075 * 2 1 3 31 31 H 0.96994 * 119.99722 * 179.97438 * 8 7 5 32 32 H 1.00903 * 110.99927 * 30.48703 * 13 3 2 33 33 H 1.08996 * 109.47499 * 64.73532 * 16 14 13 34 34 H 1.09004 * 109.47216 * 184.73924 * 16 14 13 35 35 H 1.09002 * 109.46821 * 304.73444 * 16 14 13 36 36 H 1.09004 * 109.46739 * 55.00044 * 17 14 13 37 37 H 1.08999 * 109.47172 * 174.99870 * 17 14 13 38 38 H 1.09004 * 109.47069 * 299.99476 * 18 17 14 39 39 H 1.08998 * 109.47054 * 59.99473 * 18 17 14 40 40 H 1.08001 * 119.96992 * 359.96740 * 20 19 18 41 41 H 1.08000 * 120.03002 * 180.24859 * 21 20 19 42 42 H 0.96699 * 113.99665 * 270.02592 * 23 22 21 43 43 H 1.08003 * 120.03148 * 179.97438 * 24 22 21 44 44 H 1.08001 * 119.97570 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 0.8353 5 6 3.5406 1.4448 0.1393 6 1 4.1539 1.8865 -0.6322 7 6 4.1305 0.8830 1.2517 8 7 3.3837 0.3447 2.1909 9 14 5.9904 0.8865 1.4247 10 1 6.4850 2.2867 1.4250 11 1 6.3701 0.2266 2.6997 12 1 6.5948 0.1482 0.2867 13 7 1.6644 2.0947 -1.2617 14 6 1.5709 3.5510 -1.0940 15 1 2.3139 3.8817 -0.3683 16 6 0.1719 3.9182 -0.5949 17 6 1.8295 4.2367 -2.4371 18 6 3.2711 3.9715 -2.8758 19 6 3.5256 4.6463 -4.1991 20 6 3.2909 3.9637 -5.3784 21 6 3.5181 4.5820 -6.5926 22 6 3.9933 5.8850 -6.6281 23 8 4.2236 6.4933 -7.8213 24 6 4.2333 6.5658 -5.4434 25 6 3.9983 5.9453 -4.2317 26 1 -0.3633 0.4287 -0.9339 27 1 -0.3632 -1.0232 0.0956 28 1 -0.3633 0.5943 0.8384 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7987 -0.0508 2.9733 32 1 0.8011 1.7159 -1.6215 33 1 0.0193 3.4990 0.3996 34 1 0.0750 5.0030 -0.5508 35 1 -0.5752 3.5141 -1.2781 36 1 1.1432 3.8404 -3.1854 37 1 1.6730 5.3104 -2.3330 38 1 3.9574 4.3678 -2.1275 39 1 3.4275 2.8978 -2.9799 40 1 2.9259 2.9477 -5.3501 41 1 3.3308 4.0499 -7.5135 42 1 5.1202 6.3665 -8.1607 43 1 4.6036 7.5800 -5.4683 44 1 4.1846 6.4749 -3.3091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:08 Heat of formation + Delta-G solvation = -43.188829 kcal Electronic energy + Delta-G solvation = -21510.847329 eV Core-core repulsion = 18427.189273 eV Total energy + Delta-G solvation = -3083.658055 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.73209 -37.55449 -36.72100 -34.19527 -32.13187 -31.29729 -30.94220 -28.83387 -27.61873 -26.03634 -23.66941 -22.75674 -22.71755 -20.91460 -19.87872 -19.51775 -18.43562 -16.21216 -15.81052 -15.76018 -15.17016 -15.04815 -14.44178 -14.17482 -13.83419 -13.48585 -13.28580 -13.04088 -12.70209 -12.63458 -12.43427 -12.10778 -11.92934 -11.69351 -11.51251 -11.26314 -11.06202 -10.85401 -10.64306 -10.58533 -10.45998 -10.35778 -10.11238 -9.92388 -9.65942 -9.45465 -9.04547 -8.94918 -8.35913 -8.31507 -7.13927 -5.94257 -3.98075 1.28619 1.39524 3.34398 3.39009 3.42090 3.66487 4.19661 4.46161 4.91658 4.98241 5.03495 5.24283 5.35830 5.44213 5.52629 5.56865 5.69162 5.80048 5.87350 5.95405 6.04460 6.13711 6.17021 6.18183 6.19372 6.33773 6.39804 6.42850 6.43780 6.46970 6.66365 6.69265 6.82313 6.86532 6.91513 6.99016 7.13060 7.23248 7.56403 7.57875 7.81458 7.95389 8.37195 8.44411 8.81884 9.10093 9.66869 11.10968 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017253 B = 0.004220 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.516687 B = 6633.741669 C = 7548.761198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.679 5.679 14 C 0.086 3.914 15 H 0.081 0.919 16 C -0.177 4.177 17 C -0.092 4.092 18 C -0.076 4.076 19 C -0.073 4.073 20 C -0.101 4.101 21 C -0.144 4.144 22 C 0.084 3.916 23 O -0.503 6.503 24 C -0.145 4.145 25 C -0.106 4.106 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.259 0.741 32 H 0.316 0.684 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.385 0.615 43 H 0.123 0.877 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 8.590 -12.734 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.024 4.024 15 H 0.100 0.900 16 C -0.236 4.236 17 C -0.131 4.131 18 C -0.113 4.113 19 C -0.073 4.073 20 C -0.119 4.119 21 C -0.162 4.162 22 C 0.040 3.960 23 O -0.313 6.313 24 C -0.163 4.163 25 C -0.124 4.124 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.240 0.760 43 H 0.141 0.859 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.034 8.686 -12.727 15.443 hybrid contribution 0.624 -0.066 0.594 0.864 sum -0.411 8.620 -12.133 14.889 Atomic orbital electron populations 1.21872 0.99702 0.99555 0.99491 1.21771 0.91139 1.00615 1.02936 1.19143 0.95228 0.89779 0.84609 0.98062 1.21194 0.91348 1.36287 1.04071 0.92064 1.24949 0.97840 0.95786 0.95961 1.69862 1.34662 1.39589 1.09611 0.86663 0.86104 0.78093 0.77108 1.20483 1.21556 1.20367 1.60787 1.36151 1.01634 1.32399 1.21489 0.95008 0.90276 0.95673 0.90049 1.22502 0.98947 1.00802 1.01382 1.21500 0.95601 0.98596 0.97356 1.20594 0.97161 1.02056 0.91493 1.20311 0.96666 0.94006 0.96330 1.21052 0.99359 1.00226 0.91257 1.21392 1.02054 0.94143 0.98648 1.18441 1.01431 0.91357 0.84772 1.84824 1.36078 1.75399 1.34957 1.21364 1.02449 1.00412 0.92095 1.21012 0.99313 0.94759 0.97353 0.94637 0.94559 0.93988 0.94170 0.88396 0.93123 0.86665 0.92731 0.93275 0.93422 0.92682 0.93082 0.91281 0.88780 0.85337 0.85842 0.75989 0.85918 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.65 37.16 0.36 -2.47 16 2 C -0.13 -2.90 5.36 -26.73 -0.14 -3.04 16 3 C 0.22 5.21 1.83 -68.86 -0.13 5.09 16 4 H 0.00 0.05 7.24 -51.93 -0.38 -0.33 16 5 C -0.49 -12.98 8.53 -34.44 -0.29 -13.27 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.15 11.29 55.43 0.63 -24.52 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -13.37 5.50 -100.95 -0.56 -13.93 16 14 C 0.09 1.51 2.39 -67.71 -0.16 1.35 16 15 H 0.08 1.64 7.65 -51.93 -0.40 1.24 16 16 C -0.18 -2.78 9.17 37.16 0.34 -2.44 16 17 C -0.09 -1.38 4.87 -26.73 -0.13 -1.51 16 18 C -0.08 -1.16 5.23 -27.88 -0.15 -1.30 16 19 C -0.07 -1.00 5.13 -104.60 -0.54 -1.54 16 20 C -0.10 -1.31 9.69 -39.61 -0.38 -1.70 16 21 C -0.14 -1.74 9.99 -39.43 -0.39 -2.13 16 22 C 0.08 1.01 6.70 -39.22 -0.26 0.75 16 23 O -0.50 -5.31 13.50 -19.42 -0.26 -5.57 16 24 C -0.14 -1.72 9.99 -39.43 -0.39 -2.12 16 25 C -0.11 -1.35 9.69 -39.61 -0.38 -1.73 16 26 H 0.03 0.60 6.64 -51.93 -0.34 0.26 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.10 2.56 5.94 -51.93 -0.31 2.25 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.32 5.83 6.25 -39.29 -0.25 5.59 16 33 H 0.05 0.94 7.58 -51.93 -0.39 0.54 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.69 8.04 -51.93 -0.42 0.27 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 39 H 0.09 1.62 7.69 -51.93 -0.40 1.23 16 40 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.39 2.18 9.06 45.56 0.41 2.59 16 43 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 44 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 356.06 15.07 5.37 5.37 Total: -1.00 -28.68 356.06 -9.26 -37.95 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.66 Total: 9.22 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -2.75 Total: -24.67 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.07 Total: -38.45 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.26 Total: -5.57 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.68 -9.26 -37.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.243 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds