Wall clock time and date at job start Mon Mar 30 2020 01:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47204 * 2 1 4 4 H 1.08998 * 109.47066 * 54.52671 * 3 2 1 5 5 C 1.50701 * 109.46855 * 174.52854 * 3 2 1 6 6 H 1.07994 * 120.00041 * 120.00427 * 5 3 2 7 7 C 1.37876 * 120.00100 * 299.99909 * 5 3 2 8 8 N 1.31515 * 119.99753 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00094 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47380 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47122 * 120.00172 * 9 7 5 12 12 H 1.48499 * 109.46860 * 239.99603 * 9 7 5 13 13 N 1.46902 * 109.47386 * 294.52592 * 3 2 1 14 14 C 1.46896 * 111.00067 * 152.80579 * 13 3 2 15 15 H 1.09003 * 109.47020 * 34.54179 * 14 13 3 16 16 C 1.52995 * 109.47140 * 274.54346 * 14 13 3 17 17 C 1.52997 * 109.47140 * 154.54152 * 14 13 3 18 18 C 1.50697 * 109.47269 * 295.00190 * 17 14 13 19 19 C 1.38263 * 119.94595 * 269.72470 * 18 17 14 20 20 C 1.38140 * 120.05774 * 179.72291 * 19 18 17 21 21 C 1.38739 * 119.94451 * 0.57307 * 20 19 18 22 22 O 1.35897 * 120.05758 * 179.68268 * 21 20 19 23 23 C 1.42897 * 116.99941 * 0.02562 * 22 21 20 24 24 C 1.38734 * 119.88585 * 359.70286 * 21 20 19 25 25 C 1.38149 * 119.94419 * 359.97438 * 24 21 20 26 26 H 1.08992 * 109.47465 * 180.81726 * 1 2 3 27 27 H 1.09001 * 109.47118 * 60.81786 * 1 2 3 28 28 H 1.09001 * 109.46642 * 300.82214 * 1 2 3 29 29 H 1.08999 * 109.47476 * 120.00560 * 2 1 3 30 30 H 1.09003 * 109.47134 * 240.00239 * 2 1 3 31 31 H 0.97005 * 120.00033 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99516 * 28.85014 * 13 3 2 33 33 H 1.09003 * 109.47257 * 304.71911 * 16 14 13 34 34 H 1.08999 * 109.47338 * 64.71871 * 16 14 13 35 35 H 1.09004 * 109.47313 * 184.72080 * 16 14 13 36 36 H 1.09006 * 109.47184 * 55.00144 * 17 14 13 37 37 H 1.09003 * 109.46970 * 174.99864 * 17 14 13 38 38 H 1.07998 * 119.97099 * 359.97438 * 19 18 17 39 39 H 1.07997 * 120.03188 * 180.25145 * 20 19 18 40 40 H 1.09005 * 109.47662 * 300.00009 * 23 22 21 41 41 H 1.09001 * 109.47443 * 60.00172 * 23 22 21 42 42 H 1.08999 * 109.47044 * 180.02562 * 23 22 21 43 43 H 1.07994 * 120.02859 * 179.97438 * 24 21 20 44 44 H 1.07996 * 119.97399 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9839 0.8369 5 6 3.5409 1.4446 0.1355 6 1 4.1522 1.8870 -0.6371 7 6 4.1337 0.8817 1.2458 8 7 3.3892 0.3434 2.1869 9 14 5.9941 0.8849 1.4141 10 1 6.5971 1.5477 0.2299 11 1 6.3786 1.6237 2.6435 12 1 6.4854 -0.5136 1.5030 13 7 1.6613 2.0959 -1.2600 14 6 1.5304 3.5481 -1.0814 15 1 2.2660 3.8925 -0.3544 16 6 0.1234 3.8753 -0.5775 17 6 1.7689 4.2500 -2.4198 18 6 3.1943 4.0288 -2.8561 19 6 4.1781 4.9246 -2.4802 20 6 5.4864 4.7209 -2.8741 21 6 5.8108 3.6228 -3.6575 22 8 7.0961 3.4238 -4.0517 23 6 8.0625 4.3848 -3.6225 24 6 4.8209 2.7285 -4.0382 25 6 3.5151 2.9331 -3.6361 26 1 -0.3634 -1.0275 0.0147 27 1 -0.3633 0.5011 -0.8972 28 1 -0.3633 0.5266 0.8826 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8062 -0.0529 2.9679 32 1 0.8112 1.6992 -1.6317 33 1 -0.6143 3.4574 -1.2627 34 1 -0.0168 3.4447 0.4140 35 1 -0.0014 4.9569 -0.5249 36 1 1.0917 3.8417 -3.1700 37 1 1.5850 5.3185 -2.3075 38 1 3.9242 5.7821 -1.8747 39 1 6.2552 5.4187 -2.5769 40 1 7.7891 5.3696 -4.0017 41 1 8.0909 4.4101 -2.5331 42 1 9.0448 4.1084 -4.0055 43 1 5.0707 1.8732 -4.6483 44 1 2.7442 2.2370 -3.9318 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:27 Heat of formation + Delta-G solvation = -27.017047 kcal Electronic energy + Delta-G solvation = -22396.939779 eV Core-core repulsion = 19313.982984 eV Total energy + Delta-G solvation = -3082.956794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.72950 -37.80234 -36.47118 -33.81201 -31.68407 -30.70397 -30.30864 -28.63390 -27.39271 -26.00023 -25.32704 -22.76789 -22.19323 -21.07921 -19.82099 -19.48349 -17.78920 -16.13510 -15.90174 -15.47335 -15.22345 -14.93261 -14.23309 -14.06340 -13.67302 -13.45043 -13.27921 -13.04779 -12.81590 -12.58290 -12.30084 -12.08331 -11.76996 -11.66089 -11.47932 -11.37112 -11.01344 -10.81862 -10.77188 -10.54107 -10.40606 -10.36800 -10.17897 -9.86545 -9.62967 -9.47347 -8.97761 -8.45178 -8.27173 -7.55839 -7.08330 -5.88769 -3.90757 1.88848 1.95851 3.35292 3.43450 3.51485 3.57240 4.27726 4.52574 5.08800 5.19556 5.25772 5.28883 5.36163 5.37072 5.42594 5.54541 5.66896 5.80394 5.86430 5.89925 5.97731 6.05255 6.19116 6.19897 6.21046 6.24398 6.39236 6.43266 6.52706 6.60011 6.75897 6.78681 6.87307 6.88577 7.15005 7.24214 7.26234 7.27867 7.59366 7.78070 7.85694 8.03745 8.41536 8.49911 8.86841 9.19904 9.74150 11.16714 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012721 B = 0.007383 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.581116 B = 3791.810004 C = 5257.896670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.001 0.999 5 C -0.480 4.480 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.900 5.900 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.286 1.286 13 N -0.675 5.675 14 C 0.093 3.907 15 H 0.081 0.919 16 C -0.178 4.178 17 C -0.064 4.064 18 C -0.085 4.085 19 C -0.083 4.083 20 C -0.210 4.210 21 C 0.111 3.889 22 O -0.323 6.323 23 C 0.030 3.970 24 C -0.151 4.151 25 C -0.042 4.042 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.041 0.959 29 H 0.098 0.902 30 H 0.039 0.961 31 H 0.256 0.744 32 H 0.314 0.686 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 8.405 -9.933 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.114 3.886 4 H 0.019 0.981 5 C -0.519 4.519 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.306 5.306 14 C -0.019 4.019 15 H 0.099 0.901 16 C -0.237 4.237 17 C -0.102 4.102 18 C -0.085 4.085 19 C -0.101 4.101 20 C -0.228 4.228 21 C 0.067 3.933 22 O -0.237 6.237 23 C -0.065 4.065 24 C -0.170 4.170 25 C -0.060 4.060 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.132 0.868 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.140 0.860 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.565 8.195 -10.104 13.022 hybrid contribution 0.334 0.139 1.094 1.152 sum 0.899 8.334 -9.010 12.307 Atomic orbital electron populations 1.21873 0.99732 0.99407 0.99564 1.21779 0.91083 1.00689 1.02952 1.19123 0.95275 0.89672 0.84543 0.98102 1.21289 0.91339 1.35357 1.03927 0.91847 1.24923 0.97644 0.95983 0.96045 1.69884 1.34344 1.40135 1.09684 0.86601 0.86576 0.77536 0.77759 1.19709 1.21451 1.21272 1.60769 1.36756 1.01051 1.32005 1.21442 0.94709 0.90628 0.95072 0.90110 1.22526 0.98820 1.00836 1.01505 1.20594 0.92646 0.99113 0.97813 1.19552 0.95566 0.95211 0.98193 1.20706 0.92033 0.99005 0.98374 1.21019 0.97783 0.99590 1.04442 1.18956 0.83482 0.95060 0.95788 1.86020 1.15532 1.50125 1.72064 1.22951 0.91327 0.92067 1.00171 1.20353 0.91805 0.99812 1.05010 1.20715 0.94894 0.95492 0.94924 0.94615 0.94625 0.94015 0.88399 0.94199 0.93377 0.86788 0.93329 0.92633 0.93254 0.91800 0.92132 0.86643 0.86441 0.93094 0.92824 0.88829 0.86009 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.74 37.16 0.36 -2.47 16 2 C -0.13 -2.95 5.35 -26.73 -0.14 -3.09 16 3 C 0.22 5.34 1.82 -68.86 -0.13 5.21 16 4 H 0.00 0.04 7.19 -51.93 -0.37 -0.34 16 5 C -0.48 -13.17 8.61 -34.44 -0.30 -13.47 16 6 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.84 11.29 55.43 0.63 -25.21 16 9 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 N -0.68 -13.43 5.43 -100.96 -0.55 -13.98 16 14 C 0.09 1.64 2.38 -67.72 -0.16 1.47 16 15 H 0.08 1.68 7.71 -51.93 -0.40 1.28 16 16 C -0.18 -2.73 9.16 37.16 0.34 -2.39 16 17 C -0.06 -0.95 5.03 -27.89 -0.14 -1.09 16 18 C -0.08 -1.42 4.95 -104.60 -0.52 -1.94 16 19 C -0.08 -1.35 9.69 -39.61 -0.38 -1.74 16 20 C -0.21 -3.41 9.04 -39.43 -0.36 -3.77 16 21 C 0.11 1.94 6.69 -39.21 -0.26 1.67 16 22 O -0.32 -5.25 10.50 -19.42 -0.20 -5.45 16 23 C 0.03 0.36 9.81 101.05 0.99 1.35 16 24 C -0.15 -2.63 9.99 -39.43 -0.39 -3.02 16 25 C -0.04 -0.72 9.30 -39.60 -0.37 -1.09 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.60 6.49 -51.93 -0.34 0.27 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.31 5.78 6.18 -39.29 -0.24 5.54 16 33 H 0.05 0.68 8.05 -51.93 -0.42 0.26 16 34 H 0.05 0.95 7.55 -51.93 -0.39 0.56 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.12 1.63 6.30 -52.49 -0.33 1.30 16 40 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 41 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 44 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -29.72 352.82 -8.74 -38.47 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.36 Total: 6.67 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -1.55 Total: -22.96 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.08 Total: -39.19 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.20 Total: -5.45 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.72 -8.74 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.448 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds