Wall clock time and date at job start Mon Mar 30 2020 01:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47204 * 2 1 4 4 H 1.08998 * 109.47066 * 54.52671 * 3 2 1 5 5 C 1.50701 * 109.46855 * 174.52854 * 3 2 1 6 6 H 1.07994 * 120.00041 * 120.00427 * 5 3 2 7 7 C 1.37876 * 120.00100 * 299.99909 * 5 3 2 8 8 N 1.31515 * 119.99753 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00094 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47380 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47122 * 120.00172 * 9 7 5 12 12 H 1.48499 * 109.46860 * 239.99603 * 9 7 5 13 13 N 1.46902 * 109.47386 * 294.52592 * 3 2 1 14 14 C 1.46896 * 111.00067 * 152.80579 * 13 3 2 15 15 H 1.09003 * 109.47020 * 34.54179 * 14 13 3 16 16 C 1.52995 * 109.47140 * 274.54346 * 14 13 3 17 17 C 1.52997 * 109.47140 * 154.54152 * 14 13 3 18 18 C 1.50697 * 109.47269 * 295.00190 * 17 14 13 19 19 C 1.38263 * 119.94595 * 269.72470 * 18 17 14 20 20 C 1.38140 * 120.05774 * 179.72291 * 19 18 17 21 21 C 1.38739 * 119.94451 * 0.57307 * 20 19 18 22 22 O 1.35897 * 120.05758 * 179.68268 * 21 20 19 23 23 C 1.42897 * 116.99941 * 0.02562 * 22 21 20 24 24 C 1.38734 * 119.88585 * 359.70286 * 21 20 19 25 25 C 1.38149 * 119.94419 * 359.97438 * 24 21 20 26 26 H 1.08992 * 109.47465 * 180.81726 * 1 2 3 27 27 H 1.09001 * 109.47118 * 60.81786 * 1 2 3 28 28 H 1.09001 * 109.46642 * 300.82214 * 1 2 3 29 29 H 1.08999 * 109.47476 * 120.00560 * 2 1 3 30 30 H 1.09003 * 109.47134 * 240.00239 * 2 1 3 31 31 H 0.97005 * 120.00033 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99516 * 28.85014 * 13 3 2 33 33 H 1.09003 * 109.47257 * 304.71911 * 16 14 13 34 34 H 1.08999 * 109.47338 * 64.71871 * 16 14 13 35 35 H 1.09004 * 109.47313 * 184.72080 * 16 14 13 36 36 H 1.09006 * 109.47184 * 55.00144 * 17 14 13 37 37 H 1.09003 * 109.46970 * 174.99864 * 17 14 13 38 38 H 1.07998 * 119.97099 * 359.97438 * 19 18 17 39 39 H 1.07997 * 120.03188 * 180.25145 * 20 19 18 40 40 H 1.09005 * 109.47662 * 300.00009 * 23 22 21 41 41 H 1.09001 * 109.47443 * 60.00172 * 23 22 21 42 42 H 1.08999 * 109.47044 * 180.02562 * 23 22 21 43 43 H 1.07994 * 120.02859 * 179.97438 * 24 21 20 44 44 H 1.07996 * 119.97399 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9839 0.8369 5 6 3.5409 1.4446 0.1355 6 1 4.1522 1.8870 -0.6371 7 6 4.1337 0.8817 1.2458 8 7 3.3892 0.3434 2.1869 9 14 5.9941 0.8849 1.4141 10 1 6.5971 1.5477 0.2299 11 1 6.3786 1.6237 2.6435 12 1 6.4854 -0.5136 1.5030 13 7 1.6613 2.0959 -1.2600 14 6 1.5304 3.5481 -1.0814 15 1 2.2660 3.8925 -0.3544 16 6 0.1234 3.8753 -0.5775 17 6 1.7689 4.2500 -2.4198 18 6 3.1943 4.0288 -2.8561 19 6 4.1781 4.9246 -2.4802 20 6 5.4864 4.7209 -2.8741 21 6 5.8108 3.6228 -3.6575 22 8 7.0961 3.4238 -4.0517 23 6 8.0625 4.3848 -3.6225 24 6 4.8209 2.7285 -4.0382 25 6 3.5151 2.9331 -3.6361 26 1 -0.3634 -1.0275 0.0147 27 1 -0.3633 0.5011 -0.8972 28 1 -0.3633 0.5266 0.8826 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8062 -0.0529 2.9679 32 1 0.8112 1.6992 -1.6317 33 1 -0.6143 3.4574 -1.2627 34 1 -0.0168 3.4447 0.4140 35 1 -0.0014 4.9569 -0.5249 36 1 1.0917 3.8417 -3.1700 37 1 1.5850 5.3185 -2.3075 38 1 3.9242 5.7821 -1.8747 39 1 6.2552 5.4187 -2.5769 40 1 7.7891 5.3696 -4.0017 41 1 8.0909 4.4101 -2.5331 42 1 9.0448 4.1084 -4.0055 43 1 5.0707 1.8732 -4.6483 44 1 2.7442 2.2370 -3.9318 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:26 Heat of formation + Delta-G solvation = -43.677013 kcal Electronic energy + Delta-G solvation = -22397.662209 eV Core-core repulsion = 19313.982984 eV Total energy + Delta-G solvation = -3083.679225 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94938 -39.17533 -37.95991 -35.48919 -33.62989 -32.01015 -31.63627 -30.16723 -28.45526 -27.90983 -26.54810 -24.62410 -23.45270 -22.39238 -21.42746 -21.11919 -18.98675 -18.23714 -17.17706 -16.76294 -16.57860 -16.53810 -15.92564 -15.54687 -15.02759 -14.91693 -14.68857 -14.37295 -14.27707 -14.14946 -13.67012 -13.44903 -13.24162 -13.10508 -12.85771 -12.83146 -12.61975 -12.53427 -12.47410 -12.02006 -11.89539 -11.73849 -11.67822 -11.49775 -11.48544 -11.16880 -10.92243 -10.39009 -9.73844 -8.88734 -8.71578 -8.02384 -6.10928 0.60392 0.67274 1.33519 1.37134 1.48952 2.43989 2.47555 2.98955 3.22627 3.76004 3.99456 4.06592 4.12591 4.33096 4.36468 4.37627 4.53710 4.58110 4.58971 4.62864 4.65178 4.67587 4.68659 4.76532 4.83692 4.95904 5.06838 5.10103 5.13599 5.25868 5.29561 5.36528 5.38947 5.48304 5.50759 5.59996 5.69608 5.83464 5.96401 5.99826 6.05697 6.46204 6.57421 6.67410 7.06132 7.17994 7.57757 9.00164 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012721 B = 0.007383 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.581116 B = 3791.810004 C = 5257.896670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.232 3.768 4 H -0.030 1.030 5 C -0.487 4.487 6 H 0.045 0.955 7 C 0.010 3.990 8 N -0.921 5.921 9 Si 0.939 3.061 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.673 5.673 14 C 0.093 3.907 15 H 0.043 0.957 16 C -0.169 4.169 17 C -0.054 4.054 18 C -0.099 4.099 19 C -0.093 4.093 20 C -0.218 4.218 21 C 0.097 3.903 22 O -0.342 6.342 23 C 0.021 3.979 24 C -0.173 4.173 25 C -0.053 4.053 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.256 0.744 32 H 0.326 0.674 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 9.483 -10.890 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C 0.124 3.876 4 H -0.013 1.013 5 C -0.526 4.526 6 H 0.063 0.937 7 C -0.187 4.187 8 N -0.563 5.563 9 Si 0.766 3.234 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.304 5.304 14 C -0.018 4.018 15 H 0.061 0.939 16 C -0.228 4.228 17 C -0.092 4.092 18 C -0.099 4.099 19 C -0.111 4.111 20 C -0.236 4.236 21 C 0.052 3.948 22 O -0.257 6.257 23 C -0.073 4.073 24 C -0.191 4.191 25 C -0.071 4.071 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.009 9.285 -11.070 14.448 hybrid contribution 0.565 -0.156 1.367 1.488 sum 0.574 9.128 -9.703 13.334 Atomic orbital electron populations 1.21723 0.96245 1.00899 1.00466 1.21601 0.94208 0.99450 1.00861 1.18804 0.93287 0.90219 0.85292 1.01295 1.21485 0.93163 1.34715 1.03273 0.93681 1.25523 1.00981 0.96102 0.96087 1.69998 1.35503 1.40783 1.09993 0.85791 0.82644 0.77504 0.77415 1.20358 1.20815 1.20855 1.60629 1.37682 1.02464 1.29642 1.21428 0.95241 0.89138 0.95948 0.93896 1.22408 0.97453 1.02474 1.00451 1.20551 0.91959 1.00383 0.96276 1.19831 0.96686 0.95207 0.98185 1.21046 0.92117 0.99636 0.98335 1.21322 0.98508 0.99724 1.04059 1.19178 0.84101 0.95411 0.96100 1.85990 1.15566 1.51749 1.72354 1.23260 0.91513 0.92386 1.00175 1.20592 0.92404 1.00425 1.05723 1.20882 0.94998 0.95924 0.95263 0.92810 0.92110 0.94671 0.91906 0.94768 0.93424 0.85476 0.91249 0.94986 0.90847 0.90048 0.89595 0.84783 0.84358 0.91279 0.93244 0.86226 0.85614 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 9.74 71.98 0.70 -4.29 16 2 C -0.12 -5.73 5.35 30.60 0.16 -5.57 16 3 C 0.23 11.37 1.82 44.17 0.08 11.45 16 4 H -0.03 -1.67 7.19 -2.39 -0.02 -1.69 16 5 C -0.49 -27.30 8.61 25.60 0.22 -27.08 16 6 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 7 C 0.01 0.58 5.29 84.65 0.45 1.03 16 8 N -0.92 -53.96 11.29 21.45 0.24 -53.72 16 9 Si 0.94 46.22 29.54 68.60 2.03 48.25 16 10 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 13 N -0.67 -26.30 5.43 -473.32 -2.57 -28.87 16 14 C 0.09 3.18 2.38 44.91 0.11 3.29 16 15 H 0.04 1.80 7.71 -2.39 -0.02 1.78 16 16 C -0.17 -4.81 9.16 71.98 0.66 -4.16 16 17 C -0.05 -1.49 5.03 29.85 0.15 -1.34 16 18 C -0.10 -3.19 4.95 -19.85 -0.10 -3.29 16 19 C -0.09 -2.94 9.69 22.25 0.22 -2.73 16 20 C -0.22 -6.90 9.04 22.37 0.20 -6.70 16 21 C 0.10 3.33 6.69 22.51 0.15 3.48 16 22 O -0.34 -10.93 10.50 -92.39 -0.97 -11.90 16 23 C 0.02 0.46 9.81 113.37 1.11 1.58 16 24 C -0.17 -6.05 9.99 22.37 0.22 -5.82 16 25 C -0.05 -1.78 9.30 22.26 0.21 -1.57 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 1.91 6.49 -2.39 -0.02 1.89 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 3.40 5.94 -2.39 -0.01 3.39 16 30 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 32 H 0.33 11.36 6.18 -89.69 -0.55 10.81 16 33 H 0.07 1.69 8.05 -2.39 -0.02 1.68 16 34 H 0.03 1.05 7.55 -2.39 -0.02 1.03 16 35 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.08 1.98 8.08 -2.38 -0.02 1.97 16 37 H 0.09 1.96 8.08 -2.39 -0.02 1.94 16 38 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.14 3.63 6.30 -2.91 -0.02 3.62 16 40 H 0.07 1.26 7.66 -2.38 -0.02 1.24 16 41 H 0.05 1.12 7.66 -2.39 -0.02 1.10 16 42 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 44 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -65.47 352.82 3.68 -61.79 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.41 Total: 26.16 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 4.54 Total: -41.71 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -2.33 Total: -82.59 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.97 Total: -11.90 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -65.47 3.68 -61.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.111 kcal (2) G-P(sol) polarization free energy of solvation -65.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds