Wall clock time and date at job start Mon Mar 30 2020 02:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47056 * 2 1 4 4 O 1.42898 * 109.47180 * 180.02562 * 3 2 1 5 5 C 1.35904 * 117.00132 * 179.97438 * 4 3 2 6 6 C 1.38755 * 120.05339 * 0.02562 * 5 4 3 7 7 C 1.38120 * 119.94302 * 179.97438 * 6 5 4 8 8 C 1.38291 * 120.05458 * 359.74510 * 7 6 5 9 9 C 1.38244 * 120.11262 * 0.50786 * 8 7 6 10 10 C 1.50699 * 119.97254 * 179.76626 * 9 8 7 11 11 N 1.46904 * 109.47253 * 269.72505 * 10 9 8 12 12 C 1.46891 * 111.00074 * 174.56057 * 11 10 9 13 13 H 1.09000 * 109.47346 * 34.03462 * 12 11 10 14 14 C 1.50699 * 109.47252 * 154.03449 * 12 11 10 15 15 H 1.08003 * 120.00178 * 0.02562 * 14 12 11 16 16 C 1.37881 * 120.00091 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99931 * 180.02562 * 16 14 12 18 18 Si 1.86797 * 119.99965 * 0.02562 * 16 14 12 19 19 H 1.48504 * 109.47260 * 269.99745 * 18 16 14 20 20 H 1.48498 * 109.47161 * 29.99692 * 18 16 14 21 21 H 1.48497 * 109.47171 * 150.00060 * 18 16 14 22 22 C 1.53001 * 109.47230 * 274.03313 * 12 11 10 23 23 C 1.53001 * 109.47171 * 300.29953 * 22 12 11 24 24 C 1.38167 * 120.05461 * 359.49238 * 9 8 7 25 25 H 1.08995 * 109.47287 * 60.00017 * 1 2 3 26 26 H 1.09002 * 109.46964 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47051 * 299.99722 * 1 2 3 28 28 H 1.09004 * 109.47051 * 240.00278 * 2 1 3 29 29 H 1.08995 * 109.47287 * 119.99983 * 2 1 3 30 30 H 1.08996 * 109.47234 * 60.00365 * 3 2 1 31 31 H 1.09003 * 109.47327 * 300.00304 * 3 2 1 32 32 H 1.07997 * 120.02709 * 359.95828 * 6 5 4 33 33 H 1.07995 * 119.97501 * 180.02562 * 7 6 5 34 34 H 1.07996 * 119.94481 * 180.27689 * 8 7 6 35 35 H 1.09005 * 109.47039 * 149.73291 * 10 9 8 36 36 H 1.08993 * 109.47362 * 29.72785 * 10 9 8 37 37 H 1.00906 * 110.99876 * 298.51524 * 11 10 9 38 38 H 0.96999 * 119.99452 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.47077 * 60.29431 * 22 12 11 40 40 H 1.08998 * 109.47199 * 180.29383 * 22 12 11 41 41 H 1.08997 * 109.46710 * 302.16920 * 23 22 12 42 42 H 1.08991 * 109.47426 * 62.17236 * 23 22 12 43 43 H 1.08996 * 109.47251 * 182.17674 * 23 22 12 44 44 H 1.08003 * 120.02816 * 180.22989 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0859 2.6534 -0.0012 6 6 3.3313 3.8178 -0.0007 7 6 3.9607 5.0473 -0.0008 8 6 5.3418 5.1183 0.0039 9 6 6.0959 3.9597 -0.0019 10 6 7.6007 4.0408 -0.0020 11 7 8.0896 4.0671 -1.3871 12 6 9.5430 4.2756 -1.4285 13 1 10.0046 3.7883 -0.5697 14 6 10.0991 3.6865 -2.6992 15 1 9.4387 3.2056 -3.4057 16 6 11.4508 3.7623 -2.9604 17 7 11.9359 3.2485 -4.0697 18 14 12.5929 4.5946 -1.7390 19 1 12.7010 6.0389 -2.0672 20 1 12.0483 4.4384 -0.3663 21 1 13.9374 3.9684 -1.8124 22 6 9.8445 5.7751 -1.3870 23 6 9.1904 6.4603 -2.5885 24 6 5.4711 2.7274 -0.0018 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 2.2527 3.7628 -0.0005 33 1 3.3739 5.9539 0.0000 34 1 5.8321 6.0806 0.0083 35 1 8.0115 3.1716 0.5117 36 1 7.9157 4.9490 0.5117 37 1 7.8311 3.2242 -1.8779 38 1 12.8869 3.3015 -4.2532 39 1 9.4469 6.2003 -0.4654 40 1 10.9228 5.9300 -1.4230 41 1 9.5593 6.0087 -3.5094 42 1 8.1088 6.3383 -2.5319 43 1 9.4373 7.5219 -2.5802 44 1 6.0606 1.8225 -0.0025 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183964.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:36 Heat of formation + Delta-G solvation = -24.770869 kcal Electronic energy + Delta-G solvation = -21126.278986 eV Core-core repulsion = 18043.419593 eV Total energy + Delta-G solvation = -3082.859393 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12408 -37.95085 -36.34059 -34.19286 -33.02274 -31.63543 -30.32198 -29.68266 -27.00480 -26.63410 -24.40009 -23.08574 -22.44914 -21.98216 -20.63091 -19.30552 -17.80396 -16.47589 -16.44642 -16.15603 -15.89068 -15.33178 -14.47724 -14.37133 -14.01786 -13.85742 -13.63728 -13.38981 -13.07519 -12.82742 -12.55534 -12.47410 -12.38382 -12.05005 -11.77577 -11.50883 -11.44314 -11.28860 -10.95013 -10.81477 -10.74910 -10.57768 -10.46095 -10.16597 -9.95463 -9.32809 -8.97238 -8.68914 -8.56415 -8.07345 -7.46125 -6.08759 -4.07508 1.44538 1.59788 3.09757 3.28056 3.37130 3.39020 3.88701 4.39587 4.56819 4.57418 4.87585 4.89221 4.92508 5.08349 5.10126 5.19117 5.24257 5.31057 5.35630 5.50017 5.58001 5.60790 5.70843 5.73468 5.84050 5.90997 6.07381 6.14626 6.24014 6.24385 6.39373 6.48787 6.54889 6.74441 6.83727 6.89786 6.93003 7.13200 7.25784 7.46957 7.50345 7.62041 7.92355 8.34620 8.61873 8.96310 9.53624 11.04119 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027226 B = 0.003346 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.183697 B = 8366.982502 C = 8949.644491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.318 6.318 5 C 0.126 3.874 6 C -0.217 4.217 7 C -0.084 4.084 8 C -0.136 4.136 9 C -0.026 4.026 10 C 0.092 3.908 11 N -0.669 5.669 12 C 0.185 3.815 13 H 0.001 0.999 14 C -0.513 4.513 15 H 0.079 0.921 16 C 0.073 3.927 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.277 1.277 20 H -0.269 1.269 21 H -0.298 1.298 22 C -0.113 4.113 23 C -0.125 4.125 24 C -0.146 4.146 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.341 0.659 38 H 0.264 0.736 39 H 0.030 0.970 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.019 0.981 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.089 -0.739 10.297 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.015 4.015 4 O -0.232 6.232 5 C 0.081 3.919 6 C -0.236 4.236 7 C -0.102 4.102 8 C -0.155 4.155 9 C -0.026 4.026 10 C -0.037 4.037 11 N -0.300 5.300 12 C 0.076 3.924 13 H 0.019 0.981 14 C -0.551 4.551 15 H 0.097 0.903 16 C -0.129 4.129 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.194 1.194 21 H -0.226 1.226 22 C -0.151 4.151 23 C -0.182 4.182 24 C -0.165 4.165 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.160 0.840 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.974 -0.306 10.092 22.381 hybrid contribution 0.863 -0.179 0.822 1.206 sum -19.110 -0.485 10.914 22.013 Atomic orbital electron populations 1.21688 0.94371 1.02460 1.02146 1.21488 0.95908 0.95030 1.03799 1.22817 0.78920 0.98576 1.01235 1.86047 1.20902 1.27330 1.88914 1.18909 0.92156 0.83847 0.96971 1.21120 0.99494 0.92563 1.10410 1.20883 0.94668 0.96696 0.97992 1.20956 0.93286 0.98371 1.02845 1.19773 0.96051 0.91857 0.94964 1.20950 0.89015 1.00796 0.92987 1.60508 1.15512 1.43494 1.10502 1.19587 0.83706 0.92072 0.97033 0.98142 1.21026 0.93299 1.36858 1.03947 0.90323 1.24893 0.97971 0.95026 0.95010 1.69891 1.13652 1.45602 1.24470 0.86863 0.79653 0.79363 0.82401 1.20386 1.19383 1.22599 1.21748 0.98044 0.98281 0.96987 1.21466 1.00851 0.96286 0.99634 1.20347 0.91158 0.98447 1.06596 0.92354 0.91772 0.92457 0.90720 0.90869 0.92290 0.92151 0.86109 0.86143 0.85828 0.94964 0.90666 0.84015 0.92615 0.95083 0.94119 0.91480 0.92532 0.96166 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.96 6.30 -26.73 -0.17 -1.13 16 3 C 0.06 0.56 4.74 37.16 0.18 0.74 16 4 O -0.32 -4.20 10.14 -19.44 -0.20 -4.40 16 5 C 0.13 1.77 6.69 -39.22 -0.26 1.51 16 6 C -0.22 -2.69 9.04 -39.43 -0.36 -3.05 16 7 C -0.08 -1.04 10.04 -39.61 -0.40 -1.44 16 8 C -0.14 -1.91 9.70 -39.56 -0.38 -2.30 16 9 C -0.03 -0.40 5.44 -104.65 -0.57 -0.97 16 10 C 0.09 1.56 5.58 -4.97 -0.03 1.53 16 11 N -0.67 -13.50 5.53 -109.22 -0.60 -14.10 16 12 C 0.18 4.31 1.89 -68.87 -0.13 4.18 16 13 H 0.00 0.03 6.90 -51.93 -0.36 -0.33 16 14 C -0.51 -14.07 7.89 -34.44 -0.27 -14.34 16 15 H 0.08 2.34 7.85 -52.48 -0.41 1.93 16 16 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 17 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 18 Si 0.89 22.03 24.38 -169.99 -4.14 17.89 16 19 H -0.28 -6.75 6.87 56.52 0.39 -6.36 16 20 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 21 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 22 C -0.11 -2.49 5.28 -26.73 -0.14 -2.63 16 23 C -0.13 -2.65 9.52 37.16 0.35 -2.30 16 24 C -0.15 -2.22 9.64 -39.43 -0.38 -2.60 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 31 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 32 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.03 0.54 8.09 -51.93 -0.42 0.13 16 36 H 0.07 1.24 7.34 -51.93 -0.38 0.86 16 37 H 0.34 7.08 8.25 -39.29 -0.32 6.75 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.03 0.61 7.45 -51.93 -0.39 0.23 16 40 H 0.04 0.95 3.26 -51.93 -0.17 0.78 16 41 H 0.07 1.59 7.15 -51.93 -0.37 1.22 16 42 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.13 1.90 8.06 -52.48 -0.42 1.47 16 LS Contribution 348.52 15.07 5.25 5.25 Total: -1.00 -29.99 348.52 -8.54 -38.53 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.33 Total: 4.55 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -2.29 Total: -21.29 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.17 Total: -40.53 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.20 Total: -4.40 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.99 -8.54 -38.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183964.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.760 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds