Wall clock time and date at job start Mon Mar 30 2020 02:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47056 * 2 1 4 4 O 1.42898 * 109.47180 * 180.02562 * 3 2 1 5 5 C 1.35904 * 117.00132 * 179.97438 * 4 3 2 6 6 C 1.38755 * 120.05339 * 0.02562 * 5 4 3 7 7 C 1.38120 * 119.94302 * 179.97438 * 6 5 4 8 8 C 1.38291 * 120.05458 * 359.74510 * 7 6 5 9 9 C 1.38244 * 120.11262 * 0.50786 * 8 7 6 10 10 C 1.50699 * 119.97254 * 179.76626 * 9 8 7 11 11 N 1.46904 * 109.47253 * 269.72505 * 10 9 8 12 12 C 1.46891 * 111.00074 * 174.56057 * 11 10 9 13 13 H 1.09000 * 109.47346 * 34.03462 * 12 11 10 14 14 C 1.50699 * 109.47252 * 154.03449 * 12 11 10 15 15 H 1.08003 * 120.00178 * 0.02562 * 14 12 11 16 16 C 1.37881 * 120.00091 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99931 * 180.02562 * 16 14 12 18 18 Si 1.86797 * 119.99965 * 0.02562 * 16 14 12 19 19 H 1.48504 * 109.47260 * 269.99745 * 18 16 14 20 20 H 1.48498 * 109.47161 * 29.99692 * 18 16 14 21 21 H 1.48497 * 109.47171 * 150.00060 * 18 16 14 22 22 C 1.53001 * 109.47230 * 274.03313 * 12 11 10 23 23 C 1.53001 * 109.47171 * 300.29953 * 22 12 11 24 24 C 1.38167 * 120.05461 * 359.49238 * 9 8 7 25 25 H 1.08995 * 109.47287 * 60.00017 * 1 2 3 26 26 H 1.09002 * 109.46964 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47051 * 299.99722 * 1 2 3 28 28 H 1.09004 * 109.47051 * 240.00278 * 2 1 3 29 29 H 1.08995 * 109.47287 * 119.99983 * 2 1 3 30 30 H 1.08996 * 109.47234 * 60.00365 * 3 2 1 31 31 H 1.09003 * 109.47327 * 300.00304 * 3 2 1 32 32 H 1.07997 * 120.02709 * 359.95828 * 6 5 4 33 33 H 1.07995 * 119.97501 * 180.02562 * 7 6 5 34 34 H 1.07996 * 119.94481 * 180.27689 * 8 7 6 35 35 H 1.09005 * 109.47039 * 149.73291 * 10 9 8 36 36 H 1.08993 * 109.47362 * 29.72785 * 10 9 8 37 37 H 1.00906 * 110.99876 * 298.51524 * 11 10 9 38 38 H 0.96999 * 119.99452 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.47077 * 60.29431 * 22 12 11 40 40 H 1.08998 * 109.47199 * 180.29383 * 22 12 11 41 41 H 1.08997 * 109.46710 * 302.16920 * 23 22 12 42 42 H 1.08991 * 109.47426 * 62.17236 * 23 22 12 43 43 H 1.08996 * 109.47251 * 182.17674 * 23 22 12 44 44 H 1.08003 * 120.02816 * 180.22989 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0859 2.6534 -0.0012 6 6 3.3313 3.8178 -0.0007 7 6 3.9607 5.0473 -0.0008 8 6 5.3418 5.1183 0.0039 9 6 6.0959 3.9597 -0.0019 10 6 7.6007 4.0408 -0.0020 11 7 8.0896 4.0671 -1.3871 12 6 9.5430 4.2756 -1.4285 13 1 10.0046 3.7883 -0.5697 14 6 10.0991 3.6865 -2.6992 15 1 9.4387 3.2056 -3.4057 16 6 11.4508 3.7623 -2.9604 17 7 11.9359 3.2485 -4.0697 18 14 12.5929 4.5946 -1.7390 19 1 12.7010 6.0389 -2.0672 20 1 12.0483 4.4384 -0.3663 21 1 13.9374 3.9684 -1.8124 22 6 9.8445 5.7751 -1.3870 23 6 9.1904 6.4603 -2.5885 24 6 5.4711 2.7274 -0.0018 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 2.2527 3.7628 -0.0005 33 1 3.3739 5.9539 0.0000 34 1 5.8321 6.0806 0.0083 35 1 8.0115 3.1716 0.5117 36 1 7.9157 4.9490 0.5117 37 1 7.8311 3.2242 -1.8779 38 1 12.8869 3.3015 -4.2532 39 1 9.4469 6.2003 -0.4654 40 1 10.9228 5.9300 -1.4230 41 1 9.5593 6.0087 -3.5094 42 1 8.1088 6.3383 -2.5319 43 1 9.4373 7.5219 -2.5802 44 1 6.0606 1.8225 -0.0025 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183964.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:35 Heat of formation + Delta-G solvation = -42.875251 kcal Electronic energy + Delta-G solvation = -21127.064051 eV Core-core repulsion = 18043.419593 eV Total energy + Delta-G solvation = -3083.644458 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.11981 -39.09953 -37.91367 -34.95155 -34.61083 -33.48620 -31.56444 -30.83489 -28.71201 -27.45781 -25.81752 -24.94613 -23.46096 -22.78403 -21.65868 -21.10633 -19.00576 -18.32926 -17.42702 -17.22020 -17.06651 -16.78168 -15.79354 -15.61531 -15.31192 -15.05734 -15.02390 -14.77753 -14.62919 -14.29522 -13.88623 -13.42666 -13.29958 -13.10965 -13.00081 -12.89544 -12.65522 -12.46582 -12.27407 -12.18126 -12.07999 -11.99415 -11.82606 -11.56467 -11.50481 -11.23283 -10.94241 -10.68545 -9.81392 -9.12269 -9.09102 -8.29199 -6.31685 0.37881 0.54715 1.30929 1.34664 1.44541 2.23307 2.31678 2.80585 3.06869 3.63577 3.86077 3.89903 3.94933 4.04362 4.15017 4.27483 4.33257 4.36567 4.44984 4.49192 4.53503 4.55569 4.59406 4.71010 4.76377 4.79020 4.87354 4.97784 5.11235 5.11879 5.17699 5.18251 5.33419 5.36665 5.37254 5.41820 5.52345 5.64105 5.76017 5.78975 5.87162 6.00360 6.49328 6.51403 6.64625 6.82015 7.33512 8.87350 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027226 B = 0.003346 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.183697 B = 8366.982502 C = 8949.644491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.052 3.948 4 O -0.337 6.337 5 C 0.117 3.883 6 C -0.212 4.212 7 C -0.079 4.079 8 C -0.145 4.145 9 C -0.040 4.040 10 C 0.096 3.904 11 N -0.667 5.667 12 C 0.189 3.811 13 H -0.006 1.006 14 C -0.510 4.510 15 H 0.039 0.961 16 C 0.018 3.982 17 N -0.947 5.947 18 Si 0.945 3.055 19 H -0.265 1.265 20 H -0.251 1.251 21 H -0.300 1.300 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.167 4.167 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.133 0.867 35 H 0.029 0.971 36 H 0.085 0.915 37 H 0.333 0.667 38 H 0.265 0.735 39 H 0.062 0.938 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.062 0.938 43 H 0.047 0.953 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.067 1.119 12.232 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.022 4.022 4 O -0.252 6.252 5 C 0.072 3.928 6 C -0.230 4.230 7 C -0.097 4.097 8 C -0.163 4.163 9 C -0.040 4.040 10 C -0.033 4.033 11 N -0.297 5.297 12 C 0.080 3.920 13 H 0.011 0.989 14 C -0.548 4.548 15 H 0.057 0.943 16 C -0.180 4.180 17 N -0.587 5.587 18 Si 0.773 3.227 19 H -0.191 1.191 20 H -0.175 1.175 21 H -0.228 1.228 22 C -0.152 4.152 23 C -0.174 4.174 24 C -0.186 4.186 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.151 0.849 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.151 0.849 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -21.984 1.556 12.047 25.117 hybrid contribution 1.309 -0.842 0.190 1.568 sum -20.675 0.715 12.237 24.035 Atomic orbital electron populations 1.21673 0.92528 1.03212 1.02804 1.21516 0.97384 0.94018 1.03219 1.23116 0.76987 0.99857 1.02287 1.86034 1.23073 1.27282 1.88824 1.19035 0.91965 0.84870 0.96970 1.21465 1.00901 0.91868 1.08817 1.21255 0.94190 0.97951 0.96279 1.21142 0.94243 0.98072 1.02886 1.19618 0.95000 0.92635 0.96794 1.20952 0.90402 1.01082 0.90847 1.60488 1.13429 1.43087 1.12746 1.19435 0.85366 0.92974 0.94233 0.98851 1.21253 0.92930 1.35958 1.04680 0.94320 1.25697 0.99730 0.95848 0.96719 1.70036 1.14089 1.47806 1.26794 0.85901 0.77264 0.78737 0.80830 1.19094 1.17504 1.22837 1.21729 0.97679 0.96997 0.98786 1.21364 1.01033 0.97540 0.97503 1.20374 0.92146 0.98144 1.07969 0.91870 0.91036 0.91593 0.91614 0.91227 0.90809 0.91306 0.83314 0.82884 0.84930 0.95314 0.89642 0.84927 0.92585 0.91967 0.95059 0.95058 0.91851 0.93448 0.86613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.91 71.98 0.71 -0.64 16 2 C -0.12 -1.77 6.30 30.59 0.19 -1.58 16 3 C 0.05 0.89 4.74 71.98 0.34 1.23 16 4 O -0.34 -8.70 10.14 -92.46 -0.94 -9.64 16 5 C 0.12 3.16 6.69 22.51 0.15 3.31 16 6 C -0.21 -4.67 9.04 22.37 0.20 -4.46 16 7 C -0.08 -1.70 10.04 22.25 0.22 -1.47 16 8 C -0.14 -3.75 9.70 22.28 0.22 -3.53 16 9 C -0.04 -1.20 5.44 -19.88 -0.11 -1.31 16 10 C 0.10 3.19 5.58 85.56 0.48 3.67 16 11 N -0.67 -26.91 5.53 -499.48 -2.76 -29.67 16 12 C 0.19 8.76 1.89 44.17 0.08 8.85 16 13 H -0.01 -0.29 6.90 -2.39 -0.02 -0.30 16 14 C -0.51 -28.77 7.89 25.60 0.20 -28.56 16 15 H 0.04 2.43 7.85 -2.91 -0.02 2.41 16 16 C 0.02 1.03 5.45 84.66 0.46 1.49 16 17 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 18 Si 0.95 45.27 24.38 68.60 1.67 46.94 16 19 H -0.26 -12.11 6.87 99.48 0.68 -11.43 16 20 H -0.25 -11.21 6.53 99.48 0.65 -10.56 16 21 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 22 C -0.11 -4.80 5.28 30.59 0.16 -4.64 16 23 C -0.12 -4.77 9.52 71.98 0.69 -4.09 16 24 C -0.17 -5.08 9.64 22.37 0.22 -4.87 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.07 0.51 8.14 -2.38 -0.02 0.50 16 28 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 31 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 32 H 0.15 2.38 6.30 -2.91 -0.02 2.36 16 33 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.03 0.97 8.09 -2.38 -0.02 0.95 16 36 H 0.09 2.64 7.34 -2.39 -0.02 2.63 16 37 H 0.33 14.30 8.25 -89.69 -0.74 13.56 16 38 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 39 H 0.06 2.24 7.45 -2.38 -0.02 2.22 16 40 H 0.03 1.38 3.26 -2.39 -0.01 1.37 16 41 H 0.03 1.47 7.15 -2.39 -0.02 1.45 16 42 H 0.06 2.46 7.66 -2.39 -0.02 2.44 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.12 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -66.07 348.52 2.64 -63.43 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.15 Total: 24.52 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 4.22 Total: -36.61 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -2.46 Total: -88.64 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.94 Total: -9.64 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.67 Total: 46.94 kcal Total: -66.07 2.64 -63.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183964.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.554 kcal (2) G-P(sol) polarization free energy of solvation -66.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds